Rroxscaffold_176G00431730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
OG0000512
Physical Location & Seq
Forward (+)
1575545 .. 1575982
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00431730.1

Sequence Viewer

Length: 438 bp
ATGAAGCCATTATTCCAGAAAATCAGCAGCCTCTTTAATGGTCCTCCTCCAGCTGGCAGCGACCAAGATGTAGAAGCCCTACCAGACAAAGCTCAAGCTACTAGGTACCGCAACTTAGATTGGGCAAAGATATTTGTTGTCTTCTGCTTGGCATCAGCCATTGCTATATCTCTGCCATCAGCTCAAGTCTACTCTCAGCTCCCTCTAACCTTCTACTTCCTCTCATTCACCCTCATTTTCTCCTTTACCTGTTTCTTCATTGCTAAATTCATTCACTTGACCCGTCCCCAACCGGCTCAAGTACTAGACCGATTTGGCATTTTCTTTGGCGTGACAGCATTTTTCATTTCCATTACAATTCCGTTTCCGTTGTGGTTCAAATGTACCACCGGTCTCATCTATCTGCTCTCCTGGCTTGCAATTCTAGTTTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.41

Weight (kDa)

9.21

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 105
AccI GTMKAC 1 cut(s) 189
AciI CCGC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 3 cut(s) 107, 303, 385
AfiI CCNNNNNNNGG 1 cut(s) 53
AgeI ACCGGT 1 cut(s) 389
AgsI TTSAA 1 cut(s) 379
AjnI CCWGG 1 cut(s) 410
AluBI AGCT 5 cut(s) 53, 92, 98, 182, 199
AluI AGCT 5 cut(s) 53, 92, 98, 182, 199
Alw26I GTCTC 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 27, 57
ApoI RAATTY 1 cut(s) 266
AsiGI ACCGGT 1 cut(s) 389
Asp718I GGTACC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 39, 69
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 398
BfaI CTAG 3 cut(s) 102, 305, 425
BisI GCNGC 2 cut(s) 28, 58
BlsI GCNGC 2 cut(s) 29, 59
BmcAI AGTACT 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 412
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 412
BmsI GCATC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 3 cut(s) 78, 168, 282
BsaI GGTCTC 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 2 cut(s) 292, 389
Bse3DI GCAATG 2 cut(s) 159, 258
BseBI CCWGG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 2 cut(s) 159, 258
BseMII CTCAG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 39, 69
BshNI GGYRCC 1 cut(s) 105
BshTI ACCGGT 1 cut(s) 389
BsiSI CCGG 2 cut(s) 293, 390
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 398
BsmFI GGGAC 1 cut(s) 270
Bso31I GGTCTC 1 cut(s) 398
BspACI CCGC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 398
BsrDI GCAATG 2 cut(s) 159, 258
BsrFI RCCGGY 2 cut(s) 292, 389
BssAI RCCGGY 2 cut(s) 292, 389
Bst2UI CCWGG 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 55, 417
BstDEI CTNAG 2 cut(s) 115, 195
BstMAI GTCTC 1 cut(s) 398
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNI CCWGG 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 410
BstV1I GCAGC 2 cut(s) 39, 69
BstV2I GAAGAC 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 55, 417
Cfr10I RCCGGY 2 cut(s) 292, 389
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 3 cut(s) 106, 302, 384
CspAI ACCGGT 1 cut(s) 389
CviQI GTAC 3 cut(s) 106, 302, 384
DdeI CTNAG 2 cut(s) 115, 195
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 410
FaiI YATR 1 cut(s) 167
FaqI GGGAC 1 cut(s) 270
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 28, 58
Fsp4HI GCNGC 2 cut(s) 28, 58
FspBI CTAG 3 cut(s) 102, 305, 425
GluI GCNGC 2 cut(s) 28, 58
GsuI CTGGAG 1 cut(s) 33
HapII CCGG 2 cut(s) 293, 390
HpaII CCGG 2 cut(s) 293, 390
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 2 cut(s) 115, 195
KpnI GGTACC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 9 cut(s) 29, 39, 63, 96, 262, 306, 397, 403, 424
Lsp1109I GCAGC 2 cut(s) 39, 69
LweI GCATC 1 cut(s) 161
MaeI CTAG 3 cut(s) 102, 305, 425
MaeIII GTNAC 1 cut(s) 331
MboII GAAGA 2 cut(s) 133, 247
MluCI AATT 3 cut(s) 266, 357, 420
MnlI CCTC 6 cut(s) 41, 54, 57, 213, 230, 242
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 2 cut(s) 293, 390
MspR9I CCNGG 1 cut(s) 412
MvaI CCWGG 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 412
NlaIV GGNNCC 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 389
PkrI GCNGC 2 cut(s) 29, 59
Psp6I CCWGG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 107
PspPI GGNCC 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 3 cut(s) 107, 303, 385
RsaNI GTAC 3 cut(s) 106, 302, 384
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 28, 58
Sau96I GGNCC 1 cut(s) 41
ScaI AGTACT 1 cut(s) 303
ScrFI CCNGG 1 cut(s) 412
SetI ASST 8 cut(s) 55, 94, 100, 107, 184, 201, 212, 251
SfaNI GCATC 1 cut(s) 161
SinI GGWCC 1 cut(s) 41
SmlI CTYRAG 3 cut(s) 93, 183, 297
SmoI CTYRAG 3 cut(s) 93, 183, 297
Sse9I AATT 3 cut(s) 266, 357, 420
SsiI CCGC 1 cut(s) 109
SspMI CTAG 3 cut(s) 102, 305, 425
StyD4I CCNGG 1 cut(s) 410
TaqII GACCGA 1 cut(s) 324
TasI AATT 3 cut(s) 266, 357, 420
TatI WGTACW 1 cut(s) 301
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 2 cut(s) 27, 57
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 4 cut(s) 17, 247, 259, 334
TspGWI ACGGA 2 cut(s) 351, 357
VpaK11BI GGWCC 1 cut(s) 41
XapI RAATTY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 3 cut(s) 102, 305, 425
ZrmI AGTACT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.