Rh7BG469800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000512
Physical Location & Seq
Reverse (-)
55495291 .. 55495758
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG469800.1

Sequence Viewer

Length: 468 bp
ATGGCTCAGCCAGCGGACGTAGAAATGGGTCAACCACCGGCAGCAGCAGAGCCCAAACAACCCAACCATTATTGGGCAAAGATACTTGCTCTGTTCTGCTCGGCATCCACCATCGAAATGGCTCTCCTCTCCGCCGAATCGGGCTCGGAGCTCCCTGCAATCTTTTACTTCCTCGGATTCACCCTCATCCTTGGCTTTACTTGCTTCTTTGTGGGCAGATGTATTCGCTCCACCTTCGAACAAGCGGCTCAGGTGCTCGAGCGAGTCGGGATTTTCTTTGGGGTCACTGCAATCTTCATATCCATCACTATTCCAGTTCCCGCTCTCTGGTTCAAATGTGTCACCGGCCTTATCTATGCGCTCTGCTGGCTTACAATCTTGGCTTGCAATTACTTCCATTCTTACCTGCTTCAAGTGTATAACAAAGTGACAAGTGTGAGCTCGGGGCTTCTGTGTTCTACTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.01

Weight (kDa)

6.05

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 414
AccBSI CCGCTC 1 cut(s) 323
AciI CCGC 4 cut(s) 14, 132, 245, 321
AfiI CCNNNNNNNGG 2 cut(s) 73, 327
AgsI TTSAA 2 cut(s) 334, 413
AluBI AGCT 2 cut(s) 151, 441
AluI AGCT 2 cut(s) 151, 441
Alw21I GWGCWC 3 cut(s) 153, 258, 443
Ama87I CYCGRG 2 cut(s) 257, 442
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 2 cut(s) 41, 44
AspLEI GCGC 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 172, 334
AsuII TTCGAA 1 cut(s) 237
AvaI CYCGRG 2 cut(s) 257, 442
BanII GRGCYC 4 cut(s) 54, 146, 153, 443
Bbv12I GWGCWC 3 cut(s) 153, 258, 443
BbvI GCAGC 2 cut(s) 53, 56
BccI CCATC 2 cut(s) 119, 311
BfuAI ACCTGC 1 cut(s) 414
BisI GCNGC 3 cut(s) 42, 45, 246
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 3 cut(s) 43, 46, 247
BmeT110I CYCGRG 2 cut(s) 257, 442
BmsI GCATC 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 249
Bpu1102I GCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 172, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 327
Bse118I RCCGGY 2 cut(s) 37, 344
Bse1I ACTGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 172, 190
BseGI GGATG 2 cut(s) 104, 186
BseLI CCNNNNNNNGG 2 cut(s) 73, 327
BseMII CTCAG 2 cut(s) 20, 263
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 53, 56
BshFI GGCC 1 cut(s) 348
BsiHKAI GWGCWC 3 cut(s) 153, 258, 443
BsiHKCI CYCGRG 2 cut(s) 257, 442
BsiSI CCGG 2 cut(s) 38, 345
BslI CCNNNNNNNGG 2 cut(s) 73, 327
BsnI GGCC 1 cut(s) 348
BsoBI CYCGRG 2 cut(s) 257, 442
Bsp119I TTCGAA 1 cut(s) 237
Bsp1286I GDGCHC 5 cut(s) 54, 146, 153, 258, 443
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 4 cut(s) 14, 132, 245, 321
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 2 cut(s) 19, 262
BspMI ACCTGC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 323
BsrFI RCCGGY 2 cut(s) 37, 344
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 2 cut(s) 37, 344
BssECI CCNNGG 2 cut(s) 172, 190
BssT1I CCWWGG 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 12, 368, 385
BstDEI CTNAG 2 cut(s) 6, 249
BstF5I GGATG 2 cut(s) 104, 186
BstHHI GCGC 1 cut(s) 361
BstMWI GCNNNNNNNGC 3 cut(s) 11, 201, 367
BstV1I GCAGC 2 cut(s) 53, 56
BstXI CCANNNNNNTGG 1 cut(s) 118
BsuRI GGCC 1 cut(s) 348
BtsCI GGATG 2 cut(s) 104, 186
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 3 cut(s) 12, 368, 385
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 2 cut(s) 37, 344
DdeI CTNAG 2 cut(s) 6, 249
EciI GGCGGA 1 cut(s) 121
Ecl136II GAGCTC 2 cut(s) 151, 441
Eco130I CCWWGG 1 cut(s) 190
Eco24I GRGCYC 4 cut(s) 54, 146, 153, 443
Eco53kI GAGCTC 2 cut(s) 151, 441
Eco88I CYCGRG 2 cut(s) 257, 442
EcoICRI GAGCTC 2 cut(s) 151, 441
EcoT14I CCWWGG 1 cut(s) 190
EcoT38I GRGCYC 4 cut(s) 54, 146, 153, 443
ErhI CCWWGG 1 cut(s) 190
FaiI YATR 3 cut(s) 299, 357, 420
FauI CCCGC 1 cut(s) 328
Fnu4HI GCNGC 3 cut(s) 42, 45, 246
FokI GGATG 2 cut(s) 91, 173
FriOI GRGCYC 4 cut(s) 54, 146, 153, 443
Fsp4HI GCNGC 3 cut(s) 42, 45, 246
GlaI GCGC 1 cut(s) 360
GluI GCNGC 3 cut(s) 42, 45, 246
HaeIII GGCC 1 cut(s) 348
HapII CCGG 2 cut(s) 38, 345
HhaI GCGC 1 cut(s) 361
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HincII GTYRAC 1 cut(s) 32
HindII GTYRAC 1 cut(s) 32
HinfI GANTC 3 cut(s) 137, 177, 264
HpaII CCGG 2 cut(s) 38, 345
HphI GGTGA 2 cut(s) 172, 334
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 148, 176
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 3 cut(s) 158, 290, 387
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 201, 367
HpyF3I CTNAG 2 cut(s) 6, 249
HpySE526I ACGT 1 cut(s) 18
HspAI GCGC 1 cut(s) 359
LmnI GCTCC 3 cut(s) 148, 156, 233
LpnPI CCDG 9 cut(s) 24, 51, 168, 236, 313, 327, 352, 358, 419
Lsp1109I GCAGC 2 cut(s) 53, 56
LweI GCATC 1 cut(s) 113
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 283, 340, 427
MbiI CCGCTC 1 cut(s) 323
MboII GAAGA 1 cut(s) 286
MhlI GDGCHC 5 cut(s) 54, 146, 153, 258, 443
MluCI AATT 1 cut(s) 388
MlyI GAGTC 1 cut(s) 273
MnlI CCTC 3 cut(s) 137, 182, 194
MslI CAYNNNNRTG 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 2 cut(s) 38, 345
MwoI GCNNNNNNNGC 3 cut(s) 11, 201, 367
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 3 cut(s) 283, 340, 427
NspV TTCGAA 1 cut(s) 237
PaeR7I CTCGAG 1 cut(s) 257
PfeI GAWTC 2 cut(s) 137, 177
PkrI GCNGC 3 cut(s) 43, 46, 247
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp124BI GAGCTC 2 cut(s) 153, 443
PspXI VCTCGAGB 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 116
SacI GAGCTC 2 cut(s) 153, 443
SatI GCNGC 3 cut(s) 42, 45, 246
SchI GAGTC 1 cut(s) 273
SduI GDGCHC 5 cut(s) 54, 146, 153, 258, 443
SetI ASST 7 cut(s) 21, 153, 236, 255, 408, 443, 467
SfaNI GCATC 1 cut(s) 113
Sfr274I CTCGAG 1 cut(s) 257
SfuI TTCGAA 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 388
SsiI CCGC 4 cut(s) 14, 132, 245, 321
SstI GAGCTC 2 cut(s) 153, 443
StyI CCWWGG 1 cut(s) 190
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 114, 237, 258
TasI AATT 1 cut(s) 388
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 2 cut(s) 137, 177
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 3 cut(s) 283, 340, 427
TseI GCWGC 2 cut(s) 41, 44
Tsp45I GTSAC 3 cut(s) 283, 340, 427
TspDTI ATGAA 1 cut(s) 286
TspRI CASTG 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XhoI CTCGAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.