Rorug02G0463100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000512
Physical Location & Seq
Forward (+)
59431377 .. 59432803
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0463100.1

Sequence Viewer

Length: 1140 bp
ATGATATCCTTGGTCGGCTTATCGAATGCAGCCGCAACTTATAATGTGATGAAATATGGTGCAAAAGCAGATGGGAAAACAGACTCAACCCAAGCATTTGTCAAGACATGGGCAGCAGCATGCAGCTCTGCTCAGACAGCCACCATGTACGTCCCCAAAGGAGGGTTCTTGCTGAAAGCTGCAGTGTTCAGAGGCCCTTGCAAGAGTAGAATTATCGTTCAGATAAACGGAACCCTGATTGCCCCTACTGATTATTGGGCTTTGGGAAACTCCGGTCACTGGATCTTGTTCATTAAGGTCAATAGACTTGCAGTTTTCGGTGGTAGACTCGACGCCAAGGGAGCTGGCTTTTGGGCTTGCAGGAAATCCGGAAAGAGCTGCCCTGTTGGAGCTAGGTCGATAACGTTCAATTGGGCAAATGACGTTGTGATAAGTGGTTTATCATCCGTCAACAGTCAGTTAACTCATCTTGTGATCAACAGCTGCAACAATGTGGCTGTCCAAAACGTTGAGCTGTATGCTCCGGATGACAGCCCCAACACTGACGGCATTCATGTGCAGGGCTCAACTGGGGTTACTATCACTGGTGCAACCTTGATGACCGGAGACGATTGTGTATCAATTGGTCCTGGCACCAAAAACCTGTACATGAGTAACATCAGGTGCGGCCCAGGACATGGCGTAAGCATTGGTAGTCTAGGCAGGGCAGTGAACGAAGCTGGGGTCCAAAATGTGACGTTGACGAATGCAGTTTTCACCGGATCGGACAACGGAGTACGAATAAAGTCATGGGCGAGGCCCAGCACTGGGTTTGTGACCAACATTCTCTTCCAGAACATCATGATGAGGAACGTTAAGAACCCCATCATCATCGATCAGAACTATTGCCCACATAACCAAGGTTGCCCTAACCAGGGTTCTGGTGTGAAGATTAGTCAAGTAACATACAAGAATATACAAGGGACGTCGGCAACGGCGGAGGCGGTAACATTTGATTGCAGCCCAAGTAATCCGTGCAGAGGGATTAGATTGCATGACATCAAGCTTACATACCTGAATAAGGTAGCCACATCTTCATGCAATAACATTGGTGGAACCAGCACCGGAGTAGTCATGCCCAGGAGTTGCGTGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

39.88

Weight (kDa)

9.35

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 15 - 62 7.2e-08 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 41 - 364 7.7e-91 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AatII GACGTC 1 cut(s) 968
AccB1I GGYRCC 1 cut(s) 632
AccB7I CCANNNNNTGG 1 cut(s) 677
AccI GTMKAC 1 cut(s) 325
AccIII TCCGGA 2 cut(s) 368, 523
AciI CCGC 4 cut(s) 33, 666, 977, 983
AclI AACGTT 3 cut(s) 404, 507, 852
AclWI GGATC 2 cut(s) 290, 769
AcyI GRCGYC 2 cut(s) 333, 965
AfaI GTAC 3 cut(s) 149, 647, 777
AgsI TTSAA 1 cut(s) 409
AjnI CCWGG 4 cut(s) 628, 670, 912, 1118
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 812, 844
AluBI AGCT 9 cut(s) 126, 179, 344, 378, 392, 483, 514, 719, 1045
AluI AGCT 9 cut(s) 126, 179, 344, 378, 392, 483, 514, 719, 1045
Alw26I GTCTC 1 cut(s) 600
AlwI GGATC 2 cut(s) 290, 769
Aor13HI TCCGGA 2 cut(s) 368, 523
AoxI GGCC 3 cut(s) 193, 667, 797
ApeKI GCWGC 8 cut(s) 29, 113, 116, 123, 179, 378, 483, 999
ArsI GACNNNNNNTTYG 2 cut(s) 708, 740
AspS9I GGNCC 5 cut(s) 194, 626, 668, 724, 798
AsuHPI GGTGA 1 cut(s) 748
AvaII GGWCC 2 cut(s) 626, 724
BanI GGYRCC 1 cut(s) 632
BanII GRGCYC 1 cut(s) 566
BbvI GCAGC 8 cut(s) 41, 125, 128, 135, 166, 365, 470, 1011
BccI CCATC 2 cut(s) 65, 872
BceAI ACGGC 2 cut(s) 562, 990
BciT130I CCWGG 4 cut(s) 630, 672, 914, 1120
BclI TGATCA 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 600
BfaI CTAG 2 cut(s) 393, 698
BfmI CTRYAG 1 cut(s) 180
Bme1390I CCNGG 4 cut(s) 630, 672, 914, 1120
Bme18I GGWCC 2 cut(s) 626, 724
BmgT120I GGNCC 5 cut(s) 194, 626, 668, 724, 798
BmiI GGNNCC 4 cut(s) 232, 634, 725, 1096
BmrFI CCNGG 4 cut(s) 630, 672, 914, 1120
BmrI ACTGGG 2 cut(s) 579, 816
BmuI ACTGGG 2 cut(s) 579, 816
Bsa29I ATCGAT 1 cut(s) 873
BsaHI GRCGYC 2 cut(s) 333, 965
BsaJI CCNNGG 6 cut(s) 9, 336, 670, 898, 913, 1118
BsaWI WCCGGW 6 cut(s) 272, 368, 523, 602, 758, 1103
Bse1I ACTGG 4 cut(s) 284, 574, 589, 811
BseAI TCCGGA 2 cut(s) 368, 523
BseBI CCWGG 4 cut(s) 630, 672, 914, 1120
BseCI ATCGAT 1 cut(s) 873
BseDI CCNNGG 6 cut(s) 9, 336, 670, 898, 913, 1118
BseGI GGATG 2 cut(s) 443, 532
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 4 cut(s) 284, 574, 589, 811
BseXI GCAGC 8 cut(s) 41, 125, 128, 135, 166, 365, 470, 1011
BseYI CCCAGC 2 cut(s) 719, 800
BsgI GTGCAG 2 cut(s) 578, 1036
BshFI GGCC 3 cut(s) 195, 669, 799
BshNI GGYRCC 1 cut(s) 632
BshVI ATCGAT 1 cut(s) 873
BsiSI CCGG 6 cut(s) 273, 369, 524, 603, 759, 1104
BslFI GGGAC 2 cut(s) 137, 976
BsmAI GTCTC 1 cut(s) 600
BsmBI CGTCTC 1 cut(s) 600
BsmFI GGGAC 2 cut(s) 137, 976
BsmI GAATGC 3 cut(s) 31, 549, 751
BsnI GGCC 3 cut(s) 195, 669, 799
Bsp1286I GDGCHC 1 cut(s) 566
Bsp13I TCCGGA 2 cut(s) 368, 523
Bsp1407I TGTACA 1 cut(s) 645
Bsp143I GATC 4 cut(s) 282, 474, 761, 874
BspACI CCGC 4 cut(s) 33, 666, 977, 983
BspANI GGCC 3 cut(s) 195, 669, 799
BspCNI CTCAG 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 873
BspEI TCCGGA 2 cut(s) 368, 523
BspHI TCATGA 1 cut(s) 840
BspLI GGNNCC 4 cut(s) 232, 634, 725, 1096
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 2 cut(s) 290, 769
BspT107I GGYRCC 1 cut(s) 632
BsrGI TGTACA 1 cut(s) 645
BsrI ACTGG 4 cut(s) 284, 574, 589, 811
BssECI CCNNGG 6 cut(s) 9, 336, 670, 898, 913, 1118
BssMI GATC 4 cut(s) 282, 474, 761, 874
BssNI GRCGYC 2 cut(s) 333, 965
BssT1I CCWWGG 3 cut(s) 9, 336, 898
Bst2UI CCWGG 4 cut(s) 630, 672, 914, 1120
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 833
BstACI GRCGYC 2 cut(s) 333, 965
BstAUI TGTACA 1 cut(s) 645
BstC8I GCNNGC 3 cut(s) 121, 346, 358
BstDEI CTNAG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 1058
BstF5I GGATG 2 cut(s) 443, 532
BstKTI GATC 4 cut(s) 285, 477, 764, 877
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 4 cut(s) 282, 474, 761, 874
BstMWI GCNNNNNNNGC 2 cut(s) 137, 341
BstNI CCWGG 4 cut(s) 630, 672, 914, 1120
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 4 cut(s) 628, 670, 912, 1118
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 8 cut(s) 41, 125, 128, 135, 166, 365, 470, 1011
BstX2I RGATCY 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 920
BstYI RGATCY 1 cut(s) 282
Bsu15I ATCGAT 1 cut(s) 873
BsuRI GGCC 3 cut(s) 195, 669, 799
BsuTUI ATCGAT 1 cut(s) 873
BtsCI GGATG 2 cut(s) 443, 532
BtsI GCAGTG 2 cut(s) 189, 714
BtsIMutI CAGTG 6 cut(s) 189, 277, 540, 582, 714, 804
Cac8I GCNNGC 3 cut(s) 121, 346, 358
CciI TCATGA 1 cut(s) 840
Cfr13I GGNCC 5 cut(s) 194, 626, 668, 724, 798
ClaI ATCGAT 1 cut(s) 873
CseI GACGC 1 cut(s) 341
Csp6I GTAC 3 cut(s) 148, 646, 776
CviQI GTAC 3 cut(s) 148, 646, 776
DdeI CTNAG 1 cut(s) 132
DpnI GATC 4 cut(s) 284, 476, 763, 876
DpnII GATC 4 cut(s) 282, 474, 761, 874
Eam1104I CTCTTC 1 cut(s) 833
EarI CTCTTC 1 cut(s) 833
EciI GGCGGA 1 cut(s) 992
Eco130I CCWWGG 3 cut(s) 9, 336, 898
Eco24I GRGCYC 1 cut(s) 566
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 2 cut(s) 626, 724
EcoNI CCTNNNNNAGG 1 cut(s) 1058
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 4 cut(s) 628, 670, 912, 1118
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 3 cut(s) 9, 336, 898
EcoT38I GRGCYC 1 cut(s) 566
ErhI CCWWGG 3 cut(s) 9, 336, 898
Esp3I CGTCTC 1 cut(s) 600
FaqI GGGAC 2 cut(s) 137, 976
FbaI TGATCA 1 cut(s) 474
FblI GTMKAC 1 cut(s) 325
FokI GGATG 2 cut(s) 430, 539
FriOI GRGCYC 1 cut(s) 566
FspBI CTAG 2 cut(s) 393, 698
GsaI CCCAGC 2 cut(s) 723, 804
HaeIII GGCC 3 cut(s) 195, 669, 799
HapII CCGG 6 cut(s) 273, 369, 524, 603, 759, 1104
HgaI GACGC 1 cut(s) 341
Hin1I GRCGYC 2 cut(s) 333, 965
HincII GTYRAC 3 cut(s) 451, 462, 741
HindII GTYRAC 3 cut(s) 451, 462, 741
HindIII AAGCTT 1 cut(s) 1043
HinfI GANTC 2 cut(s) 83, 327
HpaI GTTAAC 1 cut(s) 462
HpaII CCGG 6 cut(s) 273, 369, 524, 603, 759, 1104
HphI GGTGA 1 cut(s) 748
Hpy166II GTNNAC 5 cut(s) 326, 451, 462, 712, 741
Hpy188I TCNGA 5 cut(s) 135, 191, 222, 766, 879
Hpy188III TCNNGA 5 cut(s) 103, 369, 524, 832, 841
Hpy8I GTNNAC 5 cut(s) 326, 451, 462, 712, 741
Hpy99I CGWCG 2 cut(s) 335, 970
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 7 cut(s) 150, 404, 423, 507, 737, 852, 965
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 341
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 7 cut(s) 150, 404, 423, 507, 737, 852, 965
Hsp92I GRCGYC 2 cut(s) 333, 965
Kpn2I TCCGGA 2 cut(s) 368, 523
Ksp22I TGATCA 1 cut(s) 474
KspAI GTTAAC 1 cut(s) 462
Kzo9I GATC 4 cut(s) 282, 474, 761, 874
LmnI GCTCC 3 cut(s) 341, 389, 526
Lsp1109I GCAGC 8 cut(s) 41, 125, 128, 135, 166, 365, 470, 1011
MaeI CTAG 2 cut(s) 393, 698
MaeII ACGT 7 cut(s) 150, 404, 423, 507, 737, 852, 965
MaeIII GTNAC 7 cut(s) 275, 574, 653, 733, 814, 940, 985
MalI GATC 4 cut(s) 284, 476, 763, 876
MboI GATC 4 cut(s) 282, 474, 761, 874
MboII GAAGA 3 cut(s) 820, 940, 1065
MfeI CAATTG 2 cut(s) 409, 621
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 566
MluCI AATT 3 cut(s) 210, 409, 621
MlyI GAGTC 2 cut(s) 77, 321
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 6 cut(s) 155, 185, 789, 840, 973, 1013
MroI TCCGGA 2 cut(s) 368, 523
MseI TTAA 3 cut(s) 294, 461, 855
MslI CAYNNNNRTG 3 cut(s) 554, 842, 1075
MspA1I CMGCKG 1 cut(s) 483
MspI CCGG 6 cut(s) 273, 369, 524, 603, 759, 1104
MspR9I CCNGG 4 cut(s) 630, 672, 914, 1120
MunI CAATTG 2 cut(s) 409, 621
Mva1269I GAATGC 3 cut(s) 31, 549, 751
MvaI CCWGG 4 cut(s) 630, 672, 914, 1120
MwoI GCNNNNNNNGC 2 cut(s) 137, 341
NdeII GATC 4 cut(s) 282, 474, 761, 874
NlaIV GGNNCC 4 cut(s) 232, 634, 725, 1096
NmuCI GTSAC 3 cut(s) 275, 733, 814
NspI RCATGY 1 cut(s) 123
PaeI GCATGC 1 cut(s) 123
PagI TCATGA 1 cut(s) 840
PctI GAATGC 3 cut(s) 31, 549, 751
PflMI CCANNNNNTGG 1 cut(s) 677
PleI GAGTC 2 cut(s) 77, 321
PpsI GAGTC 2 cut(s) 77, 321
PsiI TTATAA 1 cut(s) 42
Psp1406I AACGTT 3 cut(s) 404, 507, 852
Psp6I CCWGG 4 cut(s) 628, 670, 912, 1118
PspFI CCCAGC 2 cut(s) 719, 800
PspGI CCWGG 4 cut(s) 628, 670, 912, 1118
PspN4I GGNNCC 4 cut(s) 232, 634, 725, 1096
PspPI GGNCC 5 cut(s) 194, 626, 668, 724, 798
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 483
RsaI GTAC 3 cut(s) 149, 647, 777
RsaNI GTAC 3 cut(s) 148, 646, 776
RseI CAYNNNNRTG 3 cut(s) 554, 842, 1075
SaqAI TTAA 3 cut(s) 294, 461, 855
Sau3AI GATC 4 cut(s) 282, 474, 761, 874
Sau96I GGNCC 5 cut(s) 194, 626, 668, 724, 798
SchI GAGTC 2 cut(s) 77, 321
ScrFI CCNGG 4 cut(s) 630, 672, 914, 1120
SduI GDGCHC 1 cut(s) 566
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 2 cut(s) 626, 724
SmiMI CAYNNNNRTG 3 cut(s) 554, 842, 1075
SphI GCATGC 1 cut(s) 123
Sse9I AATT 3 cut(s) 210, 409, 621
SsiI CCGC 4 cut(s) 33, 666, 977, 983
SspMI CTAG 2 cut(s) 393, 698
StyD4I CCNGG 4 cut(s) 628, 670, 912, 1118
StyI CCWWGG 3 cut(s) 9, 336, 898
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 7 cut(s) 153, 407, 426, 510, 740, 855, 968
TaqI TCGA 4 cut(s) 23, 330, 398, 873
TasI AATT 3 cut(s) 210, 409, 621
TatI WGTACW 1 cut(s) 645
TauI GCSGC 2 cut(s) 35, 669
Tru1I TTAA 3 cut(s) 294, 461, 855
Tru9I TTAA 3 cut(s) 294, 461, 855
TscAI CASTG 6 cut(s) 189, 284, 547, 589, 714, 811
TseFI GTSAC 3 cut(s) 275, 733, 814
TseI GCWGC 8 cut(s) 29, 113, 116, 123, 179, 378, 483, 999
Tsp45I GTSAC 3 cut(s) 275, 733, 814
TspDTI ATGAA 4 cut(s) 65, 280, 542, 1065
TspGWI ACGGA 4 cut(s) 243, 436, 786, 1002
TspRI CASTG 6 cut(s) 189, 284, 547, 589, 714, 811
Van91I CCANNNNNTGG 1 cut(s) 677
VpaK11BI GGWCC 2 cut(s) 626, 724
XagI CCTNNNNNAGG 1 cut(s) 1058
XceI RCATGY 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 1126
XmiI GTMKAC 1 cut(s) 325
XspI CTAG 2 cut(s) 393, 698
ZraI GACGTC 1 cut(s) 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.