Rh2AG527500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000512
Physical Location & Seq
Reverse (-)
75624441 .. 75624908
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG527500.1

Sequence Viewer

Length: 468 bp
ATGGCCTTTACTTCAGCTATCACAAAAGTGCTCCGGCTACTTCAGAAACTTAGTCCATTTGATGCTCCTCCCGACCCAGAAGCAGTGCTGCCTGATCAAGCACCAAAGCACCAACACTTGGACTGGGCAAAGATACTTGTGGTGTTCAGTTTAGCATCAGCAATTGACATAGCTCTCCTATCCGTCCAGATTCACTCCCAGAAGCTCCCTATAACCTTTTACTTTCTCGAGCTCGCTCTCTTGCTTGCATTTTCTTGTTTCTTCACCAGCAAGTCAGTTCATTCCAGCTTTCCACTAGTCGCTCGAGTGCTCGAGCGATTTGGCATATTTTTTGGAGTTACTGCATTCTTCATATCCATCACTATTCCATTTCCAGCTATGTGGTTTAAATGTATTGCGTGCTTCGTCTACGCAGTTTCTTGGCTTGCAATCTTGTTTTGCAACTCCTCACCATCCTCTGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.28

Weight (kDa)

8.41

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 118
AccI GTMKAC 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 1 cut(s) 464
AhlI ACTAGT 1 cut(s) 295
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 6 cut(s) 17, 173, 205, 232, 288, 377
AluI AGCT 6 cut(s) 17, 173, 205, 232, 288, 377
Alw21I GWGCWC 3 cut(s) 33, 234, 312
Ama87I CYCGRG 3 cut(s) 227, 303, 311
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 88
AsuHPI GGTGA 2 cut(s) 256, 441
AvaI CYCGRG 3 cut(s) 227, 303, 311
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 3 cut(s) 33, 234, 312
BbvI GCAGC 1 cut(s) 75
BccI CCATC 2 cut(s) 365, 460
BclI TGATCA 1 cut(s) 94
BcuI ACTAGT 1 cut(s) 295
BfaI CTAG 1 cut(s) 296
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmeT110I CYCGRG 3 cut(s) 227, 303, 311
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 52, 164
BmuI ACTGGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 452
BseLI CCNNNNNNNGG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 2 cut(s) 57, 436
BseXI GCAGC 1 cut(s) 75
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 3 cut(s) 33, 234, 312
BsiHKCI CYCGRG 3 cut(s) 227, 303, 311
BsiSI CCGG 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 118
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 3 cut(s) 227, 303, 311
Bsp1286I GDGCHC 3 cut(s) 33, 234, 312
Bsp143I GATC 1 cut(s) 94
BspANI GGCC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 128
BssMI GATC 1 cut(s) 94
BstC8I GCNNGC 4 cut(s) 234, 246, 400, 426
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 452
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 75
BstXI CCANNNNNNTGG 1 cut(s) 381
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 452
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 4 cut(s) 234, 246, 400, 426
CviJI RGCY 9 cut(s) 5, 17, 37, 173, 205, 232, 288, 377, 424
CviKI_1 RGCY 9 cut(s) 5, 17, 37, 173, 205, 232, 288, 377, 424
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
DraI TTTAAA 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 26
Eco88I CYCGRG 3 cut(s) 227, 303, 311
EcoICRI GAGCTC 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 234
FaiI YATR 5 cut(s) 170, 212, 326, 353, 380
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 439
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 296
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 34
HinfI GANTC 1 cut(s) 190
HpaII CCGG 1 cut(s) 34
HphI GGTGA 2 cut(s) 256, 441
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 71, 187, 227
Hpy8I GTNNAC 1 cut(s) 409
HpyCH4V TGCA 4 cut(s) 248, 344, 428, 441
HpyF3I CTNAG 1 cut(s) 50
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 3 cut(s) 36, 70, 210
LpnPI CCDG 9 cut(s) 47, 90, 105, 109, 200, 212, 280, 298, 387
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 2 cut(s) 52, 164
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 337
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 2 cut(s) 253, 340
MfeI CAATTG 1 cut(s) 162
MhlI GDGCHC 3 cut(s) 33, 234, 312
MluCI AATT 1 cut(s) 162
MnlI CCTC 3 cut(s) 78, 457, 466
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 1 cut(s) 34
MunI CAATTG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 344
NdeII GATC 1 cut(s) 94
OliI CACNNNNGTG 1 cut(s) 26
PaeR7I CTCGAG 3 cut(s) 227, 303, 311
PctI GAATGC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 118
PkrI GCNGC 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 234
PspXI VCTCGAGB 2 cut(s) 303, 311
RseI CAYNNNNRTG 1 cut(s) 26
SacI GAGCTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 94
SduI GDGCHC 3 cut(s) 33, 234, 312
SetI ASST 7 cut(s) 19, 175, 207, 218, 234, 290, 379
SfaNI GCATC 2 cut(s) 52, 164
Sfr274I CTCGAG 3 cut(s) 227, 303, 311
SlaI CTCGAG 3 cut(s) 227, 303, 311
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 3 cut(s) 227, 303, 311
SmoI CTYRAG 3 cut(s) 227, 303, 311
SpeI ACTAGT 1 cut(s) 295
Sse9I AATT 1 cut(s) 162
SspMI CTAG 1 cut(s) 296
SstI GAGCTC 1 cut(s) 234
TaqI TCGA 3 cut(s) 228, 304, 312
TasI AATT 1 cut(s) 162
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 90
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 269, 340
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 118
XhoI CTCGAG 3 cut(s) 227, 303, 311
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.