Rmu_sc0003825.1_g000034

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003825.1
OG0000512
Physical Location & Seq
Forward (+)
177745 .. 178185
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003825.1_g000034.1.cds

Sequence Viewer

Length: 441 bp
atggtccagctacttcagaaacttagtccatttgattctcctcccgatccagaagcagtgcggccagatcaagcaccaaagcaccaaaacttggactgggctaagatactagtggtattcagcttagcatcagcaattgacatagctctcctatccgtccagattcactcccagaagctccctataatcttttactttctcgagctcgctctcctgcttgccttttcttgtttcttcaccagcaagtcagttcattccaactctccgctagtcgctcgagtgctcgaccgatttggcatattttttggagtgactgcattcttcatatccatcactattccatttccagctctatggttcaaatgtactgcgtgcttcgtctacgcagtttcttggcttgcaatcttgttttgcaactcttcatcatcctctgctaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.25

Weight (kDa)

8.41

Isoelectric Point (pI)

51.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 91
AccI GTMKAC 1 cut(s) 381
AciI CCGC 2 cut(s) 61, 266
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 62
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 361
AhlI ACTAGT 1 cut(s) 109
AluBI AGCT 6 cut(s) 10, 123, 146, 178, 205, 350
AluI AGCT 6 cut(s) 10, 123, 146, 178, 205, 350
Alw21I GWGCWC 2 cut(s) 207, 285
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 2 cut(s) 200, 276
AoxI GGCC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 229
AvaI CYCGRG 2 cut(s) 200, 276
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 207, 285
BccI CCATC 1 cut(s) 338
BcuI ACTAGT 1 cut(s) 109
BfaI CTAG 2 cut(s) 110, 269
BisI GCNGC 1 cut(s) 62
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 2 cut(s) 200, 276
BmgT120I GGNCC 1 cut(s) 4
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 137
BmuI ACTGGG 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 425
BseLI CCNNNNNNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 289
BsiHKAI GWGCWC 2 cut(s) 207, 285
BsiHKCI CYCGRG 2 cut(s) 200, 276
BslI CCNNNNNNNGG 1 cut(s) 91
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 1 cut(s) 64
BsoBI CYCGRG 2 cut(s) 200, 276
Bsp1286I GDGCHC 2 cut(s) 207, 285
Bsp143I GATC 2 cut(s) 46, 67
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 2 cut(s) 61, 266
BspANI GGCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 101
BssMI GATC 2 cut(s) 46, 67
Bst6I CTCTTC 1 cut(s) 424
BstC8I GCNNGC 4 cut(s) 207, 219, 373, 399
BstDEI CTNAG 3 cut(s) 23, 102, 124
BstF5I GGATG 1 cut(s) 425
BstKTI GATC 2 cut(s) 49, 70
BstMBI GATC 2 cut(s) 46, 67
BstMCI CGRYCG 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 354
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 425
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 4 cut(s) 207, 219, 373, 399
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 366
CviJI RGCY 9 cut(s) 10, 64, 101, 123, 146, 178, 205, 350, 397
CviKI_1 RGCY 9 cut(s) 10, 64, 101, 123, 146, 178, 205, 350, 397
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 3 cut(s) 23, 102, 124
DpnI GATC 2 cut(s) 48, 69
DpnII GATC 2 cut(s) 46, 67
EaeI YGGCCR 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 424
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 205
Eco88I CYCGRG 2 cut(s) 200, 276
EcoICRI GAGCTC 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 207
FaiI YATR 5 cut(s) 143, 185, 299, 326, 355
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 1 cut(s) 412
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 2 cut(s) 110, 269
GluI GCNGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 64
HinfI GANTC 2 cut(s) 35, 163
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 4 cut(s) 44, 50, 160, 200
Hpy8I GTNNAC 1 cut(s) 382
HpyCH4V TGCA 3 cut(s) 317, 401, 414
HpyF3I CTNAG 3 cut(s) 23, 102, 124
Kzo9I GATC 2 cut(s) 46, 67
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 9 cut(s) 20, 63, 78, 82, 173, 185, 227, 253, 360
LweI GCATC 1 cut(s) 137
MaeI CTAG 2 cut(s) 110, 269
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 48, 69
MboI GATC 2 cut(s) 46, 67
MboII GAAGA 3 cut(s) 226, 313, 411
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 207, 285
MluCI AATT 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 2 cut(s) 51, 439
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 317
NdeII GATC 2 cut(s) 46, 67
NmuCI GTSAC 1 cut(s) 310
PaeR7I CTCGAG 2 cut(s) 200, 276
PctI GAATGC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 35, 163
PflMI CCANNNNNTGG 1 cut(s) 91
PkrI GCNGC 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 4
PspXI VCTCGAGB 1 cut(s) 276
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SacI GAGCTC 1 cut(s) 207
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 2 cut(s) 46, 67
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 2 cut(s) 207, 285
SetI ASST 6 cut(s) 12, 125, 148, 180, 207, 352
SfaNI GCATC 1 cut(s) 137
Sfr274I CTCGAG 2 cut(s) 200, 276
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 2 cut(s) 200, 276
SmlI CTYRAG 2 cut(s) 200, 276
SmoI CTYRAG 2 cut(s) 200, 276
SpeI ACTAGT 1 cut(s) 109
Sse9I AATT 1 cut(s) 135
SsiI CCGC 2 cut(s) 61, 266
SspMI CTAG 2 cut(s) 110, 269
SstI GAGCTC 1 cut(s) 207
TaqI TCGA 3 cut(s) 201, 277, 285
TaqII GACCGA 1 cut(s) 303
TasI AATT 1 cut(s) 135
TatI WGTACW 1 cut(s) 365
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 2 cut(s) 35, 163
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 242, 313, 411
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 4
XhoI CTCGAG 2 cut(s) 200, 276
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 2 cut(s) 110, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.