Rmu_sc0002761.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002761.1
OG0000512
Physical Location & Seq
Forward (+)
35810 .. 36289
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002761.1_g000010.1.cds

Sequence Viewer

Length: 480 bp
atgaagtttaccgtagagaatgcaaaggcatctttgctcggagtcattaaaaaacttggttgggttcctgatcttcctgaccaagaaatggctagccctcaaccagcagcagcagcagagcctcgactacccaaccacctgctagattattgggcaaagatacttgttgtgttctgctcggcatccgctatcgacatggctctcctctccgtccaaatccactctcagctccctgcaatcttttgcttcctcggattaatcatcatacttgcctttacttgcttctttgtaggcaaatgtattcactccaactttgaacaggcagctctggtgctccagcgattcggccttttcttcggagtcactgcaatcttcatatccatcaccattccatttcctttgtggttcaaatgtgtcacctgctttatccatgtgctatgctggctcacaatctggacttgcaattacttccattcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.84

Weight (kDa)

7.59

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 147, 428
Acc36I ACCTGC 2 cut(s) 147, 428
AccB7I CCANNNNNTGG 1 cut(s) 88
AciI CCGC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 2 cut(s) 317, 409
AluBI AGCT 2 cut(s) 229, 326
AluI AGCT 2 cut(s) 229, 326
Alw21I GWGCWC 1 cut(s) 336
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 4 cut(s) 107, 110, 113, 323
AseI ATTAAT 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 376, 409
AsuNHI GCTAGC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 4 cut(s) 119, 122, 125, 335
BccI CCATC 1 cut(s) 389
BfaI CTAG 2 cut(s) 93, 143
BfuAI ACCTGC 2 cut(s) 147, 428
BisI GCNGC 4 cut(s) 108, 111, 114, 324
BlsI GCNGC 4 cut(s) 109, 112, 115, 325
BmiI GGNNCC 1 cut(s) 66
BmsI GCATC 2 cut(s) 38, 191
BmtI GCTAGC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 4 cut(s) 119, 122, 125, 335
BshFI GGCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 88
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 66
BspMI ACCTGC 2 cut(s) 147, 428
BspOI GCTAGC 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 94, 443
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 113, 442
BstV1I GCAGC 4 cut(s) 119, 122, 125, 335
BsuRI GGCC 1 cut(s) 348
BtsCI GGATG 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
BveI ACCTGC 2 cut(s) 147, 428
Cac8I GCNNGC 2 cut(s) 94, 443
CviAII CATG 2 cut(s) 196, 431
CviJI RGCY 8 cut(s) 92, 96, 121, 200, 229, 326, 348, 445
CviKI_1 RGCY 8 cut(s) 92, 96, 121, 200, 229, 326, 348, 445
DdeI CTNAG 1 cut(s) 225
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
FaeI CATG 2 cut(s) 199, 434
FaiI YATR 5 cut(s) 197, 266, 377, 432, 439
FatI CATG 2 cut(s) 195, 430
Fnu4HI GCNGC 4 cut(s) 108, 111, 114, 324
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 4 cut(s) 108, 111, 114, 324
FspBI CTAG 2 cut(s) 93, 143
GluI GCNGC 4 cut(s) 108, 111, 114, 324
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 348
Hin1II CATG 2 cut(s) 199, 434
HinfI GANTC 3 cut(s) 42, 342, 360
HphI GGTGA 2 cut(s) 376, 409
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 41, 254, 359
Hpy188III TCNNGA 3 cut(s) 68, 77, 454
Hpy8I GTNNAC 1 cut(s) 9
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 23, 236, 368, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 442
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 2 cut(s) 199, 434
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 234, 339
Lsp1109I GCAGC 4 cut(s) 119, 122, 125, 335
LweI GCATC 2 cut(s) 38, 191
MaeI CTAG 2 cut(s) 93, 143
MaeIII GTNAC 2 cut(s) 361, 415
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 3 cut(s) 65, 346, 364
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 1 cut(s) 463
MlyI GAGTC 2 cut(s) 51, 369
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 4 cut(s) 108, 132, 215, 260
MseI TTAA 3 cut(s) 48, 257, 478
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 113, 442
NdeII GATC 1 cut(s) 70
NheI GCTAGC 1 cut(s) 92
NlaIII CATG 2 cut(s) 199, 434
NlaIV GGNNCC 1 cut(s) 66
NmeAIII GCCGAG 1 cut(s) 158
NmuCI GTSAC 2 cut(s) 361, 415
PaqCI CACCTGC 2 cut(s) 147, 428
PctI GAATGC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 342
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 4 cut(s) 109, 112, 115, 325
PleI GAGTC 2 cut(s) 50, 368
PpsI GAGTC 2 cut(s) 50, 368
PshBI ATTAAT 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 66
SaqAI TTAA 3 cut(s) 48, 257, 478
SatI GCNGC 4 cut(s) 108, 111, 114, 324
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 2 cut(s) 51, 369
SduI GDGCHC 1 cut(s) 336
SetI ASST 4 cut(s) 141, 231, 328, 422
SfaNI GCATC 2 cut(s) 38, 191
Sse9I AATT 1 cut(s) 463
SsiI CCGC 1 cut(s) 186
SspMI CTAG 2 cut(s) 93, 143
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 124, 192
TasI AATT 1 cut(s) 463
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 3 cut(s) 48, 257, 478
Tru9I TTAA 3 cut(s) 48, 257, 478
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 2 cut(s) 361, 415
TseI GCWGC 4 cut(s) 107, 110, 113, 323
Tsp45I GTSAC 2 cut(s) 361, 415
TspDTI ATGAA 2 cut(s) 17, 364
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 1 cut(s) 370
Van91I CCANNNNNTGG 1 cut(s) 88
VspI ATTAAT 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 399
XspI CTAG 2 cut(s) 93, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.