FvH4_5g13141

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000512
Physical Location & Seq
Reverse (-)
7427431 .. 7427914
484 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13141.t1

Sequence Viewer

Length: 378 bp
ATGAAGTATTCTGAATTTGATTTGAAGGCATTTGCTCTCCAAGTTCTAACAAAACTTGGCTGGCTTCATTATGATCGGCAAGATGAAGAAATAGCTCAGCCACCACCACCACCACCAGCGGCGCCTTTGAACCCTAACCGCCAAGATCAATGGGTAAAGATACTCGTCGTGTTTTGCTCGGCTTCCGCCATTGACATGGCTCTCCTATCCGCTCAAATTCACTCTCAACTCCCACCAATCTTTTGCTTCCTTGGTCTAGCCATCTCTTCATATCCATCACTATTCCATTTCCTTTGTGGTTTGCATGTGCCACTTGGTTTATCTATGCAATCTCCTGGTTTACAATCCTACTTTGTAATCTCTTCCATGCTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 SF1-HH

Protein Analysis

126

Amino Acids

13.92

Weight (kDa)

5.68

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AccBSI CCGCTC 1 cut(s) 212
AciI CCGC 4 cut(s) 119, 139, 186, 210
AcsI RAATTY 2 cut(s) 14, 216
AcyI GRCGYC 1 cut(s) 122
AgsI TTSAA 2 cut(s) 25, 130
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
ApoI RAATTY 2 cut(s) 14, 216
AspLEI GCGC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 121
BccI CCATC 2 cut(s) 269, 283
BciT130I CCWGG 1 cut(s) 336
BfaI CTAG 2 cut(s) 257, 376
BfoI RGCGCY 1 cut(s) 125
BisI GCNGC 1 cut(s) 120
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 336
Bpu1102I GCTNAGC 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 73, 145
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 4 cut(s) 119, 139, 186, 210
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 73, 145
BssNI GRCGYC 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 336
Bst6I CTCTTC 2 cut(s) 271, 367
BstACI GRCGYC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 76, 148
BstMBI GATC 2 cut(s) 73, 145
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 334
BstXI CCANNNNNNTGG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 1 cut(s) 124
CviAII CATG 3 cut(s) 196, 305, 367
CviJI RGCY 7 cut(s) 60, 64, 95, 100, 182, 200, 260
CviKI_1 RGCY 7 cut(s) 60, 64, 95, 100, 182, 200, 260
DdeI CTNAG 1 cut(s) 96
DinI GGCGCC 1 cut(s) 123
DpnI GATC 2 cut(s) 75, 147
DpnII GATC 2 cut(s) 73, 145
Eam1104I CTCTTC 2 cut(s) 271, 367
EarI CTCTTC 2 cut(s) 271, 367
EciI GGCGGA 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 250
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 199, 308, 370
FaiI YATR 6 cut(s) 72, 197, 271, 306, 326, 368
FatI CATG 3 cut(s) 195, 304, 366
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 2 cut(s) 257, 376
GlaI GCGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 125
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 3 cut(s) 199, 308, 370
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 341
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 304, 328
HpyF3I CTNAG 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 3 cut(s) 199, 308, 370
HspAI GCGC 1 cut(s) 122
KasI GGCGCC 1 cut(s) 121
Kzo9I GATC 2 cut(s) 73, 145
LpnPI CCDG 4 cut(s) 46, 129, 321, 348
MaeI CTAG 2 cut(s) 257, 376
MalI GATC 2 cut(s) 75, 147
MbiI CCGCTC 1 cut(s) 212
MboI GATC 2 cut(s) 73, 145
MboII GAAGA 3 cut(s) 98, 258, 354
MluCI AATT 2 cut(s) 14, 216
Mly113I GGCGCC 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
NarI GGCGCC 1 cut(s) 122
NdeII GATC 2 cut(s) 73, 145
NlaIII CATG 3 cut(s) 199, 308, 370
NlaIV GGNNCC 1 cut(s) 123
NmeAIII GCCGAG 1 cut(s) 158
NspI RCATGY 1 cut(s) 308
PkrI GCNGC 1 cut(s) 121
PluTI GGCGCC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 194
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 73, 145
ScrFI CCNGG 1 cut(s) 336
SetI ASST 1 cut(s) 97
SfoI GGCGCC 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 2 cut(s) 14, 216
SsiI CCGC 4 cut(s) 119, 139, 186, 210
SspDI GGCGCC 1 cut(s) 121
SspMI CTAG 2 cut(s) 257, 376
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 250
TasI AATT 2 cut(s) 14, 216
TauI GCSGC 1 cut(s) 122
TspDTI ATGAA 4 cut(s) 17, 56, 99, 258
XapI RAATTY 2 cut(s) 14, 216
XceI RCATGY 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XspI CTAG 2 cut(s) 257, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.