Rh7DG063500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000512
Physical Location & Seq
Forward (+)
4939316 .. 4939798
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG063500.1

Sequence Viewer

Length: 483 bp
ATGATGATTCAAGAACATTACAACACCAACAACATGAAGTATACTAAAATTAATCTGAAGGCATTTGCCCTCCACATTCTTACGAAACTCGGCTGGATTCATCATCCAGATGAAGAAGAAACTAATCAACCACCGGTAGCTAGAAACCGCAGCTTAGACTGGGCCAAGATATTTGTTGTGTTTTGCTCAGCCTCCGCGATTGAAATGGCTCTCCTATCCGCCCAAATCCACTCTCAGCTCCCGGAAATCTTTTGCTTCCTTGGACTCGCCATCATAATTTCATTTAGTTGCTTCTTTGTTAGCAAATCCATTCACTATCTGATAGTGGCTGATGTGCTCGAGCGAGTTGGCATTTTCTTTGGGGTCACGGCAATCTTCATATCCATCACTATTCCATTTCCCTTGTGGTTCAAATGTGTCACCTGCTTCATCTATGTGCTCAATTGGTTTACAATCTTGTTTTGTAATTACTTCCATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.54

Weight (kDa)

7.03

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 431
Acc36I ACCTGC 1 cut(s) 431
AccI GTMKAC 1 cut(s) 41
AccII CGCG 1 cut(s) 197
AciI CCGC 3 cut(s) 148, 195, 219
AcuI CTGAAG 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 133
AgsI TTSAA 3 cut(s) 11, 203, 412
AluBI AGCT 3 cut(s) 140, 153, 238
AluI AGCT 3 cut(s) 140, 153, 238
Alw21I GWGCWC 2 cut(s) 339, 441
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 150
AseI ATTAAT 1 cut(s) 51
AsiGI ACCGGT 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 412
AvaI CYCGRG 1 cut(s) 338
Bbv12I GWGCWC 2 cut(s) 339, 441
BbvI GCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 278, 392
BceAI ACGGC 1 cut(s) 384
BcnI CCSGG 1 cut(s) 242
BfaI CTAG 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 431
BisI GCNGC 1 cut(s) 151
BlpI GCTNAGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 242
BmrI ACTGGG 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 169
Bpu1102I GCTNAGC 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 201, 248
BseNI ACTGG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 339, 441
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 2 cut(s) 134, 242
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 2 cut(s) 339, 441
Bsp1720I GCTNAGC 1 cut(s) 187
BspACI CCGC 3 cut(s) 148, 195, 219
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 200, 247
BspFNI CGCG 1 cut(s) 197
BspMI ACCTGC 1 cut(s) 431
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 259
BssNAI GTATAC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 259
Bst1107I GTATAC 1 cut(s) 42
BstDEI CTNAG 4 cut(s) 154, 187, 234, 480
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 240
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 162
BstZ17I GTATAC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 103
BveI ACCTGC 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 162
CspAI ACCGGT 1 cut(s) 133
CviAII CATG 1 cut(s) 34
CviJI RGCY 8 cut(s) 93, 140, 153, 164, 191, 209, 238, 329
CviKI_1 RGCY 8 cut(s) 93, 140, 153, 164, 191, 209, 238, 329
DdeI CTNAG 4 cut(s) 154, 187, 234, 480
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 37
FaiI YATR 5 cut(s) 35, 42, 275, 380, 435
FatI CATG 1 cut(s) 33
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 1 cut(s) 141
GluI GCNGC 1 cut(s) 151
HaeIII GGCC 1 cut(s) 164
HapII CCGG 2 cut(s) 134, 242
Hin1II CATG 1 cut(s) 37
HinfI GANTC 3 cut(s) 7, 97, 264
HpaII CCGG 2 cut(s) 134, 242
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 2 cut(s) 42, 450
Hpy188I TCNGA 2 cut(s) 57, 321
Hpy188III TCNNGA 2 cut(s) 11, 107
Hpy8I GTNNAC 2 cut(s) 42, 450
HpyAV CCTTC 1 cut(s) 52
HpyF3I CTNAG 4 cut(s) 154, 187, 234, 480
Hsp92II CATG 1 cut(s) 37
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 6 cut(s) 79, 120, 145, 147, 255, 436
Lsp1109I GCAGC 1 cut(s) 162
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 364, 418
MboII GAAGA 3 cut(s) 125, 128, 367
MfeI CAATTG 1 cut(s) 442
MhlI GDGCHC 2 cut(s) 339, 441
MluCI AATT 4 cut(s) 48, 276, 442, 466
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 2 cut(s) 80, 202
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 2 cut(s) 108, 434
MspI CCGG 2 cut(s) 134, 242
MspR9I CCNGG 1 cut(s) 242
MunI CAATTG 1 cut(s) 442
MvnI CGCG 1 cut(s) 197
NciI CCSGG 1 cut(s) 242
NlaIII CATG 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 2 cut(s) 364, 418
PaeR7I CTCGAG 1 cut(s) 338
PaqCI CACCTGC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 7, 97
PfoI TCCNGGA 1 cut(s) 240
PinAI ACCGGT 1 cut(s) 133
PkrI GCNGC 1 cut(s) 152
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PshBI ATTAAT 1 cut(s) 51
PspPI GGNCC 1 cut(s) 162
PspXI VCTCGAGB 1 cut(s) 338
RseI CAYNNNNRTG 2 cut(s) 108, 434
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 2 cut(s) 339, 441
SetI ASST 4 cut(s) 142, 155, 240, 425
Sfr274I CTCGAG 1 cut(s) 338
SlaI CTCGAG 1 cut(s) 338
SmiMI CAYNNNNRTG 2 cut(s) 108, 434
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 4 cut(s) 48, 276, 442, 466
SsiI CCGC 3 cut(s) 148, 195, 219
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 259
TaqI TCGA 1 cut(s) 339
TasI AATT 4 cut(s) 48, 276, 442, 466
TfiI GAWTC 2 cut(s) 7, 97
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TseFI GTSAC 2 cut(s) 364, 418
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 2 cut(s) 364, 418
TspDTI ATGAA 6 cut(s) 50, 89, 126, 270, 367, 418
VspI ATTAAT 1 cut(s) 51
XcmI CCANNNNNNNNNTGG 1 cut(s) 402
XhoI CTCGAG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 41
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.