Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006127

Physical Location & Seq

Genomic Coordinates Forward (+)

17810827 .. 17814877

Gene Structure 4051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTTTACCAATGATAGGAGGCAAGAAGAGCGAACTGGAAGATATGGTACTTCAAGGCTACAATACCTTCAGGAAGTGGTGACTCAATTTCAGAGTACTACCAGTGAAGAATCAAAAGAGAAGATTGTTGCTAATCTGGCGAACTTTGCTTATGATCCTTACAACTATACCTATTTGCGCCAGCTCAATGTGGTGGAACTTTTTCTGGACCGCATAACAGAACCAAATGAGAAGCTTCTGGAATTTGGGGTAGGCGGAATCTGCAACTGTTGCCCTGATCCAGCCAATGCAGCAATTGTCACCCAGAGTGGTGGGATACCCCTTGTTATTCAATGTCTATCAAGCCCTGTTAGCAGTGGCGGATCCAGGATTCATGAACCGGATCCGCCACTGCCTGTTAGAAACACCGTGAACTATGCAATTGGATCACTATATTATCTCTGCAACACATCTAATAAGGAAGAGATTATGAAGCCAGAAGTGGTTGACATCATGAAGAGATATGCCGCTGCTGAAGGAGCAAGTGTCAGCTTCAATGTGAAAGGTGTTGTTGCTACCATTATTCCAAATGTTGTGGTGCAAATTAGAGAGGAATCTATCAAAGCAGTAAATGAACAACTCAAAGATGTGTTTGATAACATGATTACTAAGGCTTTAGGAGAGCTGAAAGAGGATATTTTGAAAAAAGTAAATGAAGTAAACGATAGTGTGGAGCAACTTAAGGAGAAAGCAGGATATAATCATATTAATAATGTCAATGCAAAGGAACAACTTGCCCATGGCAATGATGGCGAGGCACCCTCCTCCCTTTCAGCAGCAACAGATTCCGAGGCAACCTCCTTCAAAAAGGCAGCATCAGATGCTGATGCACCCTCTTCCAAAAAGGCAATATCAAATGCCAATGCAACCTCCTCTTGGGGCTCAGCAACCTCAATTTGCGCAGCAACATCAGTTTGCGCAGCAACAACCTCAGTTTGCGCAGCAACAACCTCAGGGGATGAGCCCGAAGCTGAGGTTGCTGCTGTGCAAACTGAGGTTGAGCCCCAAACTGAGGTTGTTGCTGCGCAAACTGAGGTTGCTGAGCCCCAAGAGGAGGTTGCATCGACATCTGATGTTGCCTTTTTAGAAGAGGGTGCATCGACATCTGATGCTACCTTTTTGAAGGAGATTGCCTCAGAATCTCTCTTAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

398

Amino Acids

42.59

Weight (kDa)

4.53

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37290 AT5G37290 AT5G37290
fragaria_vesca	FvH4_5g26310 FvH4_5g27560 FvH4_5g27560
malus_domestica	MD09G1253300.v1.1
prunus_persica	Prupe.3G143200_v2.0.a1 Prupe.3G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218931
rosa_laevigata	RLG00000000573 RLG00000002316 RLG00000014261
rosa_multiflora	Rmu_sc0003823.1_g000009
rosa_roxburghii	Rroxscaffold_3G00240300
rosa_rugosa	Rorug07G0179900 Rorug07G0180000 Rorug07G0180100 Rorug07G0344700
rosa_samantha	Rh7AG323200 Rh7AG499200 Rh7BG314200 Rh7CG339900 Rh7DG320300
rosa_wichuraiana	Rw6G011510 Rw7G027390 Rw7G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	4 cut(s)	940, 958, 979, 1065
AccB1I	GGYRCC	1 cut(s)	796
AciI	CCGC	5 cut(s)	211, 255, 360, 386, 507
AclWI	GGATC	7 cut(s)	149, 272, 357, 370, 377, 390, 433
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	2 cut(s)	53, 534
AfaI	GTAC	2 cut(s)	49, 97
AfiI	CCNNNNNNNGG	4 cut(s)	15, 915, 1051, 1093
AflII	CTTAAG	1 cut(s)	719
AgsI	TTSAA	6 cut(s)	54, 332, 535, 682, 844, 1162
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	5 cut(s)	184, 235, 531, 664, 1010
AluI	AGCT	5 cut(s)	184, 235, 531, 664, 1010
AlwI	GGATC	7 cut(s)	149, 272, 357, 370, 377, 390, 433
AlwNI	CAGNNNCTG	1 cut(s)	863
ApeKI	GCWGC	9 cut(s)	290, 509, 815, 851, 941, 959, 980, 1019, 1061
ApoI	RAATTY	1 cut(s)	242
AseI	ATTAAT	1 cut(s)	747
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	5 cut(s)	180, 941, 959, 980, 1066
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	91, 292
AvaII	GGWCC	1 cut(s)	208
AxyI	CCTNAGG	1 cut(s)	991
BamHI	GGATCC	2 cut(s)	362, 382
BanI	GGYRCC	1 cut(s)	796
BanII	GRGCYC	4 cut(s)	923, 1005, 1044, 1086
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbvCI	CCTCAGC	1 cut(s)	1011
BbvI	GCAGC	9 cut(s)	302, 496, 827, 863, 953, 971, 992, 1006, 1048
BccI	CCATC	1 cut(s)	782
BciT130I	CCWGG	1 cut(s)	367
BciVI	GTATCC	1 cut(s)	309
BfrI	CTTAAG	1 cut(s)	719
BfuI	GTATCC	1 cut(s)	309
BlpI	GCTNAGC	2 cut(s)	922, 1080
BmcAI	AGTACT	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	3 cut(s)	364, 384, 798
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	6 cut(s)	850, 856, 863, 1109, 1138, 1145
BplI	GAGNNNNNCTC	6 cut(s)	785, 817, 821, 853, 1157, 1189
Bpu10I	CCTNAGC	1 cut(s)	1011
Bpu1102I	GCTNAGC	2 cut(s)	922, 1080
BsaJI	CCNNGG	2 cut(s)	778, 828
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 915, 1051, 1093
Bse1I	ACTGG	2 cut(s)	40, 102
Bse21I	CCTNAGG	1 cut(s)	991
Bse3DI	GCAATG	1 cut(s)	790
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	778, 828
BseGI	GGATG	1 cut(s)	1003
BseLI	CCNNNNNNNGG	4 cut(s)	15, 915, 1051, 1093
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	9 cut(s)	936, 984, 1002, 1005, 1023, 1041, 1062, 1071, 1188
BseNI	ACTGG	2 cut(s)	40, 102
BseRI	GAGGAG	3 cut(s)	793, 901, 1106
BseXI	GCAGC	9 cut(s)	302, 496, 827, 863, 953, 971, 992, 1006, 1048
BshNI	GGYRCC	1 cut(s)	796
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	4 cut(s)	15, 915, 1051, 1093
Bsp1286I	GDGCHC	4 cut(s)	923, 1005, 1044, 1086
Bsp143I	GATC	5 cut(s)	154, 277, 362, 382, 425
Bsp1720I	GCTNAGC	2 cut(s)	922, 1080
Bsp19I	CCATGG	1 cut(s)	778
BspACI	CCGC	5 cut(s)	211, 255, 360, 386, 507
BspCNI	CTCAG	9 cut(s)	935, 983, 1003, 1004, 1024, 1042, 1063, 1072, 1187
BspHI	TCATGA	2 cut(s)	373, 492
BspLI	GGNNCC	3 cut(s)	364, 384, 798
BspPI	GGATC	7 cut(s)	149, 272, 357, 370, 377, 390, 433
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	796
BspTI	CTTAAG	1 cut(s)	719
BsrDI	GCAATG	1 cut(s)	790
BsrI	ACTGG	2 cut(s)	40, 102
BssECI	CCNNGG	2 cut(s)	778, 828
BssMI	GATC	5 cut(s)	154, 277, 362, 382, 425
BssT1I	CCWWGG	1 cut(s)	778
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	269, 409
Bst6I	CTCTTC	5 cut(s)	21, 456, 491, 880, 1122
BstAFI	CTTAAG	1 cut(s)	719
BstAPI	GCANNNNNTGC	2 cut(s)	270, 860
BstC8I	GCNNGC	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	1 cut(s)	1003
BstHHI	GCGC	5 cut(s)	180, 941, 959, 980, 1066
BstKTI	GATC	5 cut(s)	157, 280, 365, 385, 428
BstMBI	GATC	5 cut(s)	154, 277, 362, 382, 425
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstV1I	GCAGC	9 cut(s)	302, 496, 827, 863, 953, 971, 992, 1006, 1048
BstX2I	RGATCY	2 cut(s)	362, 382
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstYI	RGATCY	2 cut(s)	362, 382
Bsu36I	CCTNAGG	1 cut(s)	991
BsuI	GTATCC	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	1 cut(s)	1003
BtsI	GCAGTG	2 cut(s)	361, 389
BtsIMutI	CAGTG	3 cut(s)	109, 361, 389
Cac8I	GCNNGC	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	2 cut(s)	373, 492
CfoI	GCGC	5 cut(s)	180, 941, 959, 980, 1066
Cfr13I	GGNCC	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	48, 96
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	4 cut(s)	374, 493, 640, 779
CviQI	GTAC	2 cut(s)	48, 96
DpnI	GATC	5 cut(s)	156, 279, 364, 384, 427
DpnII	GATC	5 cut(s)	154, 277, 362, 382, 425
Eam1104I	CTCTTC	5 cut(s)	21, 456, 491, 880, 1122
EarI	CTCTTC	5 cut(s)	21, 456, 491, 880, 1122
EciI	GGCGGA	3 cut(s)	270, 375, 375
Eco130I	CCWWGG	1 cut(s)	778
Eco24I	GRGCYC	4 cut(s)	923, 1005, 1044, 1086
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	53, 534
Eco81I	CCTNAGG	1 cut(s)	991
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	778
EcoT38I	GRGCYC	4 cut(s)	923, 1005, 1044, 1086
ErhI	CCWWGG	1 cut(s)	778
FaeI	CATG	4 cut(s)	377, 496, 643, 782
FatI	CATG	4 cut(s)	373, 492, 639, 778
FokI	GGATG	1 cut(s)	1010
FriOI	GRGCYC	4 cut(s)	923, 1005, 1044, 1086
FspI	TGCGCA	4 cut(s)	940, 958, 979, 1065
GlaI	GCGC	5 cut(s)	179, 940, 958, 979, 1065
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	5 cut(s)	180, 941, 959, 980, 1066
Hin1II	CATG	4 cut(s)	377, 496, 643, 782
Hin6I	GCGC	5 cut(s)	178, 939, 957, 978, 1064
HinP1I	GCGC	5 cut(s)	178, 939, 957, 978, 1064
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	7 cut(s)	82, 110, 258, 370, 593, 824, 1178
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	2 cut(s)	91, 292
Hpy166II	GTNNAC	4 cut(s)	6, 412, 487, 700
Hpy188I	TCNGA	6 cut(s)	93, 829, 859, 1111, 1147, 1177
Hpy188III	TCNNGA	5 cut(s)	71, 206, 239, 374, 493
Hpy8I	GTNNAC	4 cut(s)	6, 412, 487, 700
HpyAV	CCTTC	4 cut(s)	77, 509, 850, 1156
HpyCH4III	ACNGT	2 cut(s)	269, 409
Hsp92II	CATG	4 cut(s)	377, 496, 643, 782
HspAI	GCGC	5 cut(s)	178, 939, 957, 978, 1064
Kzo9I	GATC	5 cut(s)	154, 277, 362, 382, 425
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	518, 712
Lsp1109I	GCAGC	9 cut(s)	302, 496, 827, 863, 953, 971, 992, 1006, 1048
LweI	GCATC	6 cut(s)	850, 856, 863, 1109, 1138, 1145
MaeIII	GTNAC	2 cut(s)	79, 298
MalI	GATC	5 cut(s)	156, 279, 364, 384, 427
MboI	GATC	5 cut(s)	154, 277, 362, 382, 425
MboII	GAAGA	8 cut(s)	38, 51, 119, 133, 473, 508, 867, 1139
MfeI	CAATTG	2 cut(s)	294, 420
MflI	RGATCY	2 cut(s)	362, 382
MhlI	GDGCHC	4 cut(s)	923, 1005, 1044, 1086
MluCI	AATT	6 cut(s)	86, 242, 294, 420, 582, 933
MlyI	GAGTC	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	3 cut(s)	720, 747, 1192
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	1 cut(s)	509
MspCI	CTTAAG	1 cut(s)	719
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	367
MunI	CAATTG	2 cut(s)	294, 420
MvaI	CCWGG	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	778
NdeII	GATC	5 cut(s)	154, 277, 362, 382, 425
NlaIII	CATG	4 cut(s)	377, 496, 643, 782
NlaIV	GGNNCC	3 cut(s)	364, 384, 798
NmuCI	GTSAC	2 cut(s)	79, 298
NsbI	TGCGCA	4 cut(s)	940, 958, 979, 1065
PagI	TCATGA	2 cut(s)	373, 492
PciSI	GCTCTTC	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	6 cut(s)	110, 258, 370, 593, 824, 1178
PfoI	TCCNGGA	1 cut(s)	365
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PshBI	ATTAAT	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	3 cut(s)	364, 384, 798
PspPI	GGNCC	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	2 cut(s)	362, 382
RsaI	GTAC	2 cut(s)	49, 97
RsaNI	GTAC	2 cut(s)	48, 96
RseI	CAYNNNNRTG	1 cut(s)	783
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	720, 747, 1192
Sau3AI	GATC	5 cut(s)	154, 277, 362, 382, 425
Sau96I	GGNCC	1 cut(s)	208
ScaI	AGTACT	1 cut(s)	97
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	4 cut(s)	923, 1005, 1044, 1086
SfaNI	GCATC	6 cut(s)	850, 856, 863, 1109, 1138, 1145
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	6 cut(s)	86, 242, 294, 420, 582, 933
SsiI	CCGC	5 cut(s)	211, 255, 360, 386, 507
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	2 cut(s)	269, 409
TaqI	TCGA	2 cut(s)	1103, 1139
TasI	AATT	6 cut(s)	86, 242, 294, 420, 582, 933
TatI	WGTACW	1 cut(s)	95
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	6 cut(s)	110, 258, 370, 593, 824, 1178
Tru1I	TTAA	3 cut(s)	720, 747, 1192
Tru9I	TTAA	3 cut(s)	720, 747, 1192
TscAI	CASTG	3 cut(s)	109, 361, 396
TseFI	GTSAC	2 cut(s)	79, 298
TseI	GCWGC	9 cut(s)	290, 509, 815, 851, 941, 959, 980, 1019, 1061
Tsp45I	GTSAC	2 cut(s)	79, 298
TspDTI	ATGAA	6 cut(s)	362, 390, 485, 509, 627, 708
TspRI	CASTG	3 cut(s)	109, 361, 396
Vha464I	CTTAAG	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	208
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XmnI	GAANNNNTTC	1 cut(s)	201
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.