Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003823.1

Orthogroup ID

OG0006127

Physical Location & Seq

Genomic Coordinates Reverse (-)

56265 .. 57050

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003823.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgtttaccaatgataggaggcaagaagagcgaaccggaagatacggtacttcaaggctgcaataccttcaggaattggtgactcaatttcagagtactacctgtgaagaatcaaaagagaagattgttgctaatctggcgaactttgcttatgatccttacaattatacctatttgcgccagcttaatgtggtggaactttttctggactgcataacagaaccaaatgagaagcttgtggaatttgggttaggcggaatctgcaattgttgccctgatccggccaatgcagcaattgtcacccagtgtggcgggataccccttgttattcaatgtctatcaagcccagttagaaacaccgtgaactacattgttgctaatctggcgaactttgcttatgatccttacaattatacctatttgcgccagctcaatgtggtggaactttttctggactgcataacagaaccaaatgagaagcttgtggaatttgggttaggtggaatctgcaattgttgccctgagccggccaatgcagcaattgtcacccagtgtggcgggataccccttgttattcaatgtctatcaagcccagttagaaacaccgtgaactatgcaattggatcactttattatctctgcaacacatctaatatggaagagattatgaagccagaagtggttgacgtcatgaagagatatgctgctgctgaagcagcaaatgtcagctttagtaatctagccaaagcatttttggacaaacatgtttccaaaaatgaactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

261

Amino Acids

29.1

Weight (kDa)

4.75

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37290 AT5G37290 AT5G37290
fragaria_vesca	FvH4_5g26310 FvH4_5g27560 FvH4_5g27560
malus_domestica	MD09G1253300.v1.1
prunus_persica	Prupe.3G143200_v2.0.a1 Prupe.3G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218931
rosa_laevigata	RLG00000000573 RLG00000002316 RLG00000014261
rosa_multiflora	Rmu_sc0003823.1_g000009
rosa_roxburghii	Rroxscaffold_3G00240300
rosa_rugosa	Rorug07G0179900 Rorug07G0180000 Rorug07G0180100 Rorug07G0344700
rosa_samantha	Rh7AG323200 Rh7AG499200 Rh7BG314200 Rh7CG339900 Rh7DG320300
rosa_wichuraiana	Rw6G011510 Rw7G027390 Rw7G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	690
AciI	CCGC	3 cut(s)	255, 312, 558
AclWI	GGATC	4 cut(s)	149, 272, 395, 631
AcoI	YGGCCR	2 cut(s)	282, 528
AcsI	RAATTY	2 cut(s)	242, 488
AcuI	CTGAAG	2 cut(s)	53, 732
AcyI	GRCGYC	1 cut(s)	687
AdeI	CACNNNGTG	2 cut(s)	306, 552
AfaI	GTAC	2 cut(s)	49, 97
AfiI	CCNNNNNNNGG	3 cut(s)	15, 280, 526
AflIII	ACRYGT	1 cut(s)	763
AgsI	TTSAA	3 cut(s)	54, 332, 578
AluBI	AGCT	5 cut(s)	184, 235, 430, 481, 729
AluI	AGCT	5 cut(s)	184, 235, 430, 481, 729
AlwI	GGATC	4 cut(s)	149, 272, 395, 631
AoxI	GGCC	2 cut(s)	282, 528
ApeKI	GCWGC	6 cut(s)	58, 290, 536, 704, 707, 716
ApoI	RAATTY	2 cut(s)	242, 488
Asp700I	GAANNNNTTC	2 cut(s)	201, 447
AspLEI	GCGC	2 cut(s)	180, 426
AsuHPI	GGTGA	3 cut(s)	91, 292, 538
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbvI	GCAGC	6 cut(s)	45, 302, 548, 691, 694, 728
BciVI	GTATCC	2 cut(s)	309, 555
BfaI	CTAG	1 cut(s)	740
BfuI	GTATCC	2 cut(s)	309, 555
BisI	GCNGC	6 cut(s)	59, 291, 537, 705, 708, 717
BlsI	GCNGC	6 cut(s)	60, 292, 538, 706, 709, 718
BmcAI	AGTACT	1 cut(s)	97
BmrI	ACTGGG	4 cut(s)	298, 341, 544, 587
BmuI	ACTGGG	4 cut(s)	298, 341, 544, 587
Bpu10I	CCTNAGC	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	687
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 280, 526
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	4 cut(s)	304, 347, 550, 593
BseLI	CCNNNNNNNGG	3 cut(s)	15, 280, 526
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	4 cut(s)	304, 347, 550, 593
BseXI	GCAGC	6 cut(s)	45, 302, 548, 691, 694, 728
BshFI	GGCC	2 cut(s)	284, 530
BsiSI	CCGG	3 cut(s)	36, 281, 527
BslI	CCNNNNNNNGG	3 cut(s)	15, 280, 526
BsnI	GGCC	2 cut(s)	284, 530
Bsp143I	GATC	4 cut(s)	154, 277, 400, 623
BspACI	CCGC	3 cut(s)	255, 312, 558
BspANI	GGCC	2 cut(s)	284, 530
BspCNI	CTCAG	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	690
BspPI	GGATC	4 cut(s)	149, 272, 395, 631
BspQI	GCTCTTC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	4 cut(s)	304, 347, 550, 593
BssAI	RCCGGY	1 cut(s)	526
BssMI	GATC	4 cut(s)	154, 277, 400, 623
BssNI	GRCGYC	1 cut(s)	687
Bst4CI	ACNGT	3 cut(s)	47, 361, 607
Bst6I	CTCTTC	3 cut(s)	21, 654, 689
BstACI	GRCGYC	1 cut(s)	687
BstAPI	GCANNNNNTGC	2 cut(s)	270, 516
BstC8I	GCNNGC	3 cut(s)	182, 428, 528
BstDEI	CTNAG	1 cut(s)	522
BstHHI	GCGC	2 cut(s)	180, 426
BstKTI	GATC	4 cut(s)	157, 280, 403, 626
BstMBI	GATC	4 cut(s)	154, 277, 400, 623
BstNSI	RCATGY	1 cut(s)	767
BstV1I	GCAGC	6 cut(s)	45, 302, 548, 691, 694, 728
BsuI	GTATCC	2 cut(s)	309, 555
BsuRI	GGCC	2 cut(s)	284, 530
BtsIMutI	CAGTG	2 cut(s)	311, 557
Cac8I	GCNNGC	3 cut(s)	182, 428, 528
CciI	TCATGA	1 cut(s)	690
CfoI	GCGC	2 cut(s)	180, 426
Cfr10I	RCCGGY	1 cut(s)	526
Csp6I	GTAC	2 cut(s)	48, 96
CviAII	CATG	2 cut(s)	691, 764
CviQI	GTAC	2 cut(s)	48, 96
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	4 cut(s)	156, 279, 402, 625
DpnII	GATC	4 cut(s)	154, 277, 400, 623
DraIII	CACNNNGTG	2 cut(s)	306, 552
EaeI	YGGCCR	2 cut(s)	282, 528
Eam1104I	CTCTTC	3 cut(s)	21, 654, 689
EarI	CTCTTC	3 cut(s)	21, 654, 689
EciI	GGCGGA	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	53, 732
FaeI	CATG	2 cut(s)	694, 767
FatI	CATG	2 cut(s)	690, 763
FauI	CCCGC	2 cut(s)	305, 551
Fnu4HI	GCNGC	6 cut(s)	59, 291, 537, 705, 708, 717
Fsp4HI	GCNGC	6 cut(s)	59, 291, 537, 705, 708, 717
FspBI	CTAG	1 cut(s)	740
GlaI	GCGC	2 cut(s)	179, 425
GluI	GCNGC	6 cut(s)	59, 291, 537, 705, 708, 717
HaeIII	GGCC	2 cut(s)	284, 530
HapII	CCGG	3 cut(s)	36, 281, 527
HhaI	GCGC	2 cut(s)	180, 426
Hin1I	GRCGYC	1 cut(s)	687
Hin1II	CATG	2 cut(s)	694, 767
Hin6I	GCGC	2 cut(s)	178, 424
HinP1I	GCGC	2 cut(s)	178, 424
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HindIII	AAGCTT	2 cut(s)	233, 479
HinfI	GANTC	4 cut(s)	82, 110, 258, 504
HpaII	CCGG	3 cut(s)	36, 281, 527
HphI	GGTGA	3 cut(s)	91, 292, 538
Hpy166II	GTNNAC	4 cut(s)	6, 364, 610, 685
Hpy188I	TCNGA	2 cut(s)	93, 785
Hpy188III	TCNNGA	4 cut(s)	71, 206, 452, 691
Hpy8I	GTNNAC	4 cut(s)	6, 364, 610, 685
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	3 cut(s)	47, 361, 607
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	9 cut(s)	61, 213, 264, 290, 459, 510, 536, 617, 642
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	1 cut(s)	687
Hsp92I	GRCGYC	1 cut(s)	687
Hsp92II	CATG	2 cut(s)	694, 767
HspAI	GCGC	2 cut(s)	178, 424
KroI	GCCGGC	1 cut(s)	526
KroNI	GCCGGC	1 cut(s)	528
Kzo9I	GATC	4 cut(s)	154, 277, 400, 623
LguI	GCTCTTC	1 cut(s)	21
Lsp1109I	GCAGC	6 cut(s)	45, 302, 548, 691, 694, 728
MaeI	CTAG	1 cut(s)	740
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	3 cut(s)	79, 298, 544
MalI	GATC	4 cut(s)	156, 279, 402, 625
MboI	GATC	4 cut(s)	154, 277, 400, 623
MboII	GAAGA	6 cut(s)	38, 51, 119, 133, 671, 706
MfeI	CAATTG	5 cut(s)	265, 294, 511, 540, 618
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	1 cut(s)	12
MroNI	GCCGGC	1 cut(s)	526
MroXI	GAANNNNTTC	2 cut(s)	201, 447
MseI	TTAA	1 cut(s)	186
MspI	CCGG	3 cut(s)	36, 281, 527
MunI	CAATTG	5 cut(s)	265, 294, 511, 540, 618
NaeI	GCCGGC	1 cut(s)	528
NdeII	GATC	4 cut(s)	154, 277, 400, 623
NgoMIV	GCCGGC	1 cut(s)	526
NlaIII	CATG	2 cut(s)	694, 767
NmuCI	GTSAC	3 cut(s)	79, 298, 544
NspI	RCATGY	1 cut(s)	767
PagI	TCATGA	1 cut(s)	690
PciI	ACATGT	1 cut(s)	763
PciSI	GCTCTTC	1 cut(s)	21
PdiI	GCCGGC	1 cut(s)	528
PdmI	GAANNNNTTC	2 cut(s)	201, 447
PfeI	GAWTC	3 cut(s)	110, 258, 504
PkrI	GCNGC	6 cut(s)	60, 292, 538, 706, 709, 718
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PscI	ACATGT	1 cut(s)	763
RsaI	GTAC	2 cut(s)	49, 97
RsaNI	GTAC	2 cut(s)	48, 96
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	6 cut(s)	59, 291, 537, 705, 708, 717
Sau3AI	GATC	4 cut(s)	154, 277, 400, 623
ScaI	AGTACT	1 cut(s)	97
SchI	GAGTC	1 cut(s)	76
SsiI	CCGC	3 cut(s)	255, 312, 558
SspMI	CTAG	1 cut(s)	740
TaaI	ACNGT	3 cut(s)	47, 361, 607
TaiI	ACGT	1 cut(s)	690
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	3 cut(s)	110, 258, 504
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	311, 557
TseFI	GTSAC	3 cut(s)	79, 298, 544
TseI	GCWGC	6 cut(s)	58, 290, 536, 704, 707, 716
Tsp45I	GTSAC	3 cut(s)	79, 298, 544
TspDTI	ATGAA	2 cut(s)	683, 707
TspRI	CASTG	2 cut(s)	311, 557
XapI	RAATTY	2 cut(s)	242, 488
XceI	RCATGY	1 cut(s)	767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	751
XmnI	GAANNNNTTC	2 cut(s)	201, 447
XspI	CTAG	1 cut(s)	740
ZraI	GACGTC	1 cut(s)	688
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.