Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006127

Physical Location & Seq

Genomic Coordinates Forward (+)

2117352 .. 2118249

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000573

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATCGGAGACAAGAAGAGCGAACTGGAAGATATGGAACTTCAAGGCTGCAATACCTTCAGGCTAACTCCGCCTACTGAATTGGTGACTCAATTTCAGAGTGCTACTAGTCAAGGACACATTGACTTTATGTTCCATGGCCGTGTGGATCGCATGGCTTCTGTTCAAGAACAAAAGGAGAAAATTGTTGCTAATTTGGCAAATTTTGCTTTTGATCCTTACAACTATACCTATTTGCGCCTGCTCAATGTGGTGGAACATTTTCTGGACTGCATAACAGAACCAAATGATAAGCTTGTGGAATTTGCTTGTGGAATTTGGAGTAGGTGGGATCTGAAATTGTTGCCCCTTATCTTAAGTGATGCAGATCGGGCCAATGCAGCAATTATCACTCAGTGTGGTGGTAACCCCCCTTGTTATTCAATGTTTATCGAGCCCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

148

Amino Acids

16.71

Weight (kDa)

4.74

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37290 AT5G37290 AT5G37290
fragaria_vesca	FvH4_5g26310 FvH4_5g27560 FvH4_5g27560
malus_domestica	MD09G1253300.v1.1
prunus_persica	Prupe.3G143200_v2.0.a1 Prupe.3G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218931
rosa_laevigata	RLG00000000573 RLG00000002316 RLG00000014261
rosa_multiflora	Rmu_sc0003823.1_g000009
rosa_roxburghii	Rroxscaffold_3G00240300
rosa_rugosa	Rorug07G0179900 Rorug07G0180000 Rorug07G0180100 Rorug07G0344700
rosa_samantha	Rh7AG323200 Rh7AG499200 Rh7BG314200 Rh7CG339900 Rh7DG320300
rosa_wichuraiana	Rw6G011510 Rw7G027390 Rw7G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	3 cut(s)	156, 209, 339
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	3 cut(s)	202, 302, 315
AcuI	CTGAAG	1 cut(s)	43
AdeI	CACNNNGTG	1 cut(s)	396
AflII	CTTAAG	1 cut(s)	355
AgsI	TTSAA	3 cut(s)	44, 167, 423
AhlI	ACTAGT	1 cut(s)	107
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	3 cut(s)	156, 209, 339
AoxI	GGCC	2 cut(s)	139, 372
ApeKI	GCWGC	2 cut(s)	48, 380
ApoI	RAATTY	3 cut(s)	202, 302, 315
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	35, 392
BceAI	ACGGC	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	3
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	355
BisI	GCNGC	2 cut(s)	49, 381
BlsI	GCNGC	2 cut(s)	50, 382
BmgT120I	GGNCC	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	30, 438
Bse8I	GATNNNNATC	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	136
BseJI	GATNNNNATC	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	2 cut(s)	30, 438
BseXI	GCAGC	2 cut(s)	35, 392
BshFI	GGCC	2 cut(s)	141, 374
BsmAI	GTCTC	1 cut(s)	3
BsnI	GGCC	2 cut(s)	141, 374
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	3, 148, 214, 331, 367
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	2 cut(s)	141, 374
BspCNI	CTCAG	1 cut(s)	406
BspPI	GGATC	3 cut(s)	156, 209, 339
BspQI	GCTCTTC	1 cut(s)	11
BspTI	CTTAAG	1 cut(s)	355
BsrI	ACTGG	2 cut(s)	30, 438
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	5 cut(s)	3, 148, 214, 331, 367
BssT1I	CCWWGG	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	11
BstAFI	CTTAAG	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	136
BstEII	GGTNACC	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	5 cut(s)	6, 151, 217, 334, 370
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	5 cut(s)	3, 148, 214, 331, 367
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 197, 206, 371, 380
BstPI	GGTNACC	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	35, 392
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	141, 374
BtgI	CCRYGG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	372
CviAII	CATG	2 cut(s)	137, 154
CviJI	RGCY	7 cut(s)	48, 64, 141, 158, 295, 374, 436
CviKI_1	RGCY	7 cut(s)	48, 64, 141, 158, 295, 374, 436
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	5 cut(s)	5, 150, 216, 333, 369
DpnII	GATC	5 cut(s)	3, 148, 214, 331, 367
DraIII	CACNNNGTG	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	438
Eco57I	CTGAAG	1 cut(s)	43
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	2 cut(s)	140, 157
FaiI	YATR	6 cut(s)	35, 131, 138, 155, 228, 275
FatI	CATG	2 cut(s)	136, 153
Fnu4HI	GCNGC	2 cut(s)	49, 381
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	2 cut(s)	49, 381
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	49, 381
HaeIII	GGCC	2 cut(s)	141, 374
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	140, 157
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	8, 99, 336
Hpy188III	TCNNGA	2 cut(s)	167, 266
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	51, 273, 365, 380
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 197, 206, 371, 380
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	140, 157
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	3, 148, 214, 331, 367
LguI	GCTCTTC	1 cut(s)	11
LpnPI	CCDG	4 cut(s)	11, 46, 251, 254
Lsp1109I	GCAGC	2 cut(s)	35, 392
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	85, 404
MalI	GATC	5 cut(s)	5, 150, 216, 333, 369
MboI	GATC	5 cut(s)	3, 148, 214, 331, 367
MboII	GAAGA	2 cut(s)	28, 41
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	9 cut(s)	80, 92, 183, 193, 202, 302, 315, 338, 384
MlyI	GAGTC	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	141
MspCI	CTTAAG	1 cut(s)	355
MwoI	GCNNNNNNNGC	5 cut(s)	70, 197, 206, 371, 380
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	5 cut(s)	3, 148, 214, 331, 367
NlaIII	CATG	2 cut(s)	140, 157
NmuCI	GTSAC	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	261
PkrI	GCNGC	2 cut(s)	50, 382
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PspEI	GGTNACC	1 cut(s)	404
PspPI	GGNCC	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	49, 381
Sau3AI	GATC	5 cut(s)	3, 148, 214, 331, 367
Sau96I	GGNCC	1 cut(s)	372
SchI	GAGTC	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	4 cut(s)	59, 233, 297, 329
SfaNI	GCATC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	9 cut(s)	80, 92, 183, 193, 202, 302, 315, 338, 384
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	136
TaqI	TCGA	1 cut(s)	432
TasI	AATT	9 cut(s)	80, 92, 183, 193, 202, 302, 315, 338, 384
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	401
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	2 cut(s)	48, 380
Tsp45I	GTSAC	1 cut(s)	85
TspRI	CASTG	1 cut(s)	401
Vha464I	CTTAAG	1 cut(s)	355
XapI	RAATTY	3 cut(s)	202, 302, 315
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.