AT5G37690

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008491
Physical Location & Seq
Reverse (-)
14973353 .. 14976229
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37690.1

Sequence Viewer

Length: 1071 bp
ATGATGATCCTTAGGCTGGCTCTAGCCATCGTCATCTCCACCTATGCAACCGCACAACCAGCATCAACATCGTCGCTTGTAACCTATATATTCGGCGACTCGCTAACCGAAGTTGGTAACAACAATTTCTTGCAATATTCGCTAGCAAGAGCAGACTTTCCATATTATGGAGTTGATTTCTCCGGTGGTAAAGCTACCGGAAGATTCACCAACGGTAGAACTATCGGCGATATCATATCTACGAAGCTCGGGATTCTATCGCCACCACCATATCTATCGTTATCACAAAACGACGATGCATTTCTCAGTGGTATAAATTACGCATCTGGAGGAGCTGGAATTCTCAATGAAACTGGCATTTACTTCATCCAAAGGCTAACTTTCAATGATCAAATAAATTGTTTCAAGAAAACTAAAGAAGTTATTAGGGCGAAAATCGGAGATGGAGCTGCGAACAAGCATGTAAATGATGCCATGTACTTCATTGGTTTGGGAAGCAACGATTATGTAAACAATTTCTTGCAGCCATTTATGGCAGATGGGCAGCAATATACACATGACGAGTTTGTCGAACTCTTGACCTCAACCCTACACAATCAGCTTACGACAATATACAAATTAGGAGCGAGGAAGGTAATATTTCATGGGTTAGGCCCATTGGGCTGTATCCCATCACAGAGAGTGAAGTCAAAGACACGCATGTGCCTGAACCGTGTCAACGAATGGGTATTGGAATTCAATTCAAGAACGAAGAAGCTATTAATAGATCTCAACAAACGCCTCCCCGGAGCTAAATTCTCTTTCGCAGACACTTATCCCGCCGTTCTCGATCTCATCAACAATCCCACTCACTACGGATTTAAGATAGCAAACACGTCATGTTGCAATGTGGACACAAGTGTTGGAGGTCTTTGTCTTCCCAATTCCAAGATGTGTAAAAACCGTCAAGACTTTGTCTTCTGGGACGCATTTCATCCGTCCGATTCGGCTAATCAAATCCTAGCCGATCATCTTTTCTCTTCTCTTCTTTCTTCCTCTTCTCCTTCTCCTGCTCCTAAACCACGTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

356

Amino Acids

39.21

Weight (kDa)

8.84

Isoelectric Point (pI)

31.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 30 - 338 2e-36 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 566
AccB7I CCANNNNNTGG 1 cut(s) 167
AciI CCGC 2 cut(s) 51, 819
AcsI RAATTY 3 cut(s) 339, 734, 794
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 2 cut(s) 16, 167
AflIII ACRYGT 1 cut(s) 873
AgsI TTSAA 4 cut(s) 385, 406, 739, 744
AjiI CACGTC 2 cut(s) 876, 1064
AleI CACNNNNGTG 1 cut(s) 700
AluBI AGCT 7 cut(s) 194, 247, 335, 449, 601, 757, 791
AluI AGCT 7 cut(s) 194, 247, 335, 449, 601, 757, 791
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 1 cut(s) 652
ApeKI GCWGC 3 cut(s) 449, 523, 544
ApoI RAATTY 3 cut(s) 339, 734, 794
AseI ATTAAT 1 cut(s) 761
AspS9I GGNCC 1 cut(s) 653
AsuC2I CCSGG 1 cut(s) 786
AsuHPI GGTGA 1 cut(s) 199
AsuNHI GCTAGC 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 248
AxyI CCTNAGG 1 cut(s) 11
BbsI GAAGAC 2 cut(s) 908, 949
BbvI GCAGC 3 cut(s) 436, 535, 556
BccI CCATC 4 cut(s) 35, 437, 533, 679
BceAI ACGGC 1 cut(s) 806
BcgI CGANNNNNNTGC 2 cut(s) 51, 85
BciVI GTATCC 1 cut(s) 677
BclI TGATCA 1 cut(s) 388
BcnI CCSGG 1 cut(s) 786
BfaI CTAG 3 cut(s) 23, 143, 1001
BfuI GTATCC 1 cut(s) 677
BglI GCCNNNNNGGC 1 cut(s) 660
BglII AGATCT 1 cut(s) 766
BisI GCNGC 3 cut(s) 450, 524, 545
BlsI GCNGC 3 cut(s) 451, 525, 546
Bme1390I CCNGG 1 cut(s) 786
BmeT110I CYCGRG 1 cut(s) 248
BmgBI CACGTC 2 cut(s) 876, 1064
BmgT120I GGNCC 1 cut(s) 653
BmrFI CCNGG 1 cut(s) 786
BmsI GCATC 4 cut(s) 71, 286, 332, 460
BmtI GCTAGC 1 cut(s) 146
BpiI GAAGAC 2 cut(s) 908, 949
BpmI CTGGAG 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 786
BsaJI CCNNGG 1 cut(s) 784
BsaWI WCCGGW 2 cut(s) 182, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 167
Bse1I ACTGG 1 cut(s) 358
Bse21I CCTNAGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 892
BseDI CCNNGG 1 cut(s) 784
BseGI GGATG 2 cut(s) 366, 973
BseLI CCNNNNNNNGG 2 cut(s) 16, 167
BseMI GCAATG 1 cut(s) 892
BseMII CTCAG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 3 cut(s) 436, 535, 556
BshFI GGCC 1 cut(s) 654
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 3 cut(s) 183, 198, 786
BslFI GGGAC 1 cut(s) 977
BslI CCNNNNNNNGG 2 cut(s) 16, 167
BsmFI GGGAC 1 cut(s) 977
BsnI GGCC 1 cut(s) 654
BsoBI CYCGRG 1 cut(s) 248
Bsp143I GATC 5 cut(s) 6, 388, 766, 829, 1006
BspACI CCGC 2 cut(s) 51, 819
BspANI GGCC 1 cut(s) 654
BspCNI CTCAG 1 cut(s) 318
BspOI GCTAGC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 892
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 784
BssMI GATC 5 cut(s) 6, 388, 766, 829, 1006
Bst4CI ACNGT 3 cut(s) 215, 713, 944
Bst6I CTCTTC 3 cut(s) 1024, 1029, 1042
BstC8I GCNNGC 2 cut(s) 18, 144
BstDEI CTNAG 2 cut(s) 11, 305
BstF5I GGATG 2 cut(s) 366, 973
BstKTI GATC 5 cut(s) 9, 391, 769, 832, 1009
BstMBI GATC 5 cut(s) 6, 388, 766, 829, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 59, 139, 660
BstNSI RCATGY 2 cut(s) 464, 703
BstSCI CCNGG 1 cut(s) 784
BstV1I GCAGC 3 cut(s) 436, 535, 556
BstV2I GAAGAC 2 cut(s) 908, 949
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
Bsu36I CCTNAGG 1 cut(s) 11
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 1 cut(s) 654
BtrI CACGTC 2 cut(s) 876, 1064
BtsCI GGATG 2 cut(s) 366, 973
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 18, 144
Cfr13I GGNCC 1 cut(s) 653
CseI GACGC 1 cut(s) 974
Csp6I GTAC 1 cut(s) 478
CviAII CATG 6 cut(s) 461, 475, 557, 644, 700, 879
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 2 cut(s) 11, 305
DpnI GATC 5 cut(s) 8, 390, 768, 831, 1008
DpnII GATC 5 cut(s) 6, 388, 766, 829, 1006
DrdI GACNNNNNNGTC 1 cut(s) 566
DseDI GACNNNNNNGTC 1 cut(s) 566
Eam1104I CTCTTC 3 cut(s) 1024, 1029, 1042
EarI CTCTTC 3 cut(s) 1024, 1029, 1042
Eco32I GATATC 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 248
EcoRI GAATTC 2 cut(s) 339, 734
EcoRV GATATC 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 301
FaeI CATG 6 cut(s) 464, 478, 560, 647, 703, 882
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FaqI GGGAC 1 cut(s) 977
FatI CATG 6 cut(s) 460, 474, 556, 643, 699, 878
FauI CCCGC 1 cut(s) 826
FbaI TGATCA 1 cut(s) 388
Fnu4HI GCNGC 3 cut(s) 450, 524, 545
FokI GGATG 2 cut(s) 353, 960
Fsp4HI GCNGC 3 cut(s) 450, 524, 545
FspBI CTAG 3 cut(s) 23, 143, 1001
GluI GCNGC 3 cut(s) 450, 524, 545
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 654
HapII CCGG 3 cut(s) 183, 198, 786
HgaI GACGC 1 cut(s) 974
Hin1II CATG 6 cut(s) 464, 478, 560, 647, 703, 882
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HinfI GANTC 4 cut(s) 98, 204, 253, 983
HpaII CCGG 3 cut(s) 183, 198, 786
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 3 cut(s) 511, 718, 892
Hpy188I TCNGA 2 cut(s) 440, 982
Hpy188III TCNNGA 7 cut(s) 250, 327, 406, 577, 744, 827, 947
Hpy8I GTNNAC 3 cut(s) 511, 718, 892
Hpy99I CGWCG 2 cut(s) 76, 296
HpyAV CCTTC 2 cut(s) 625, 1053
HpyCH4III ACNGT 3 cut(s) 215, 713, 944
HpyCH4IV ACGT 2 cut(s) 875, 1063
HpyCH4V TGCA 5 cut(s) 47, 133, 299, 523, 885
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 139, 660
HpyF3I CTNAG 2 cut(s) 11, 305
HpySE526I ACGT 2 cut(s) 875, 1063
Hsp92II CATG 6 cut(s) 464, 478, 560, 647, 703, 882
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 5 cut(s) 6, 388, 766, 829, 1006
LmnI GCTCC 5 cut(s) 332, 446, 623, 788, 1057
Lsp1109I GCAGC 3 cut(s) 436, 535, 556
LweI GCATC 4 cut(s) 71, 286, 332, 460
MaeI CTAG 3 cut(s) 23, 143, 1001
MaeII ACGT 2 cut(s) 875, 1063
MaeIII GTNAC 2 cut(s) 79, 116
MalI GATC 5 cut(s) 8, 390, 768, 831, 1008
MboI GATC 5 cut(s) 6, 388, 766, 829, 1006
MboII GAAGA 8 cut(s) 213, 763, 908, 949, 1011, 1016, 1023, 1029
MflI RGATCY 1 cut(s) 766
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 883
MnlI CCTC 6 cut(s) 323, 592, 621, 791, 899, 1045
Mph1103I ATGCAT 1 cut(s) 301
MseI TTAA 2 cut(s) 761, 861
MslI CAYNNNNRTG 2 cut(s) 465, 700
MspI CCGG 3 cut(s) 183, 198, 786
MspR9I CCNGG 1 cut(s) 786
MwoI GCNNNNNNNGC 3 cut(s) 59, 139, 660
NciI CCSGG 1 cut(s) 786
NdeII GATC 5 cut(s) 6, 388, 766, 829, 1006
NheI GCTAGC 1 cut(s) 142
NlaIII CATG 6 cut(s) 464, 478, 560, 647, 703, 882
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 2 cut(s) 464, 703
OliI CACNNNNGTG 1 cut(s) 700
PcsI WCGNNNNNNNCGW 1 cut(s) 567
PfeI GAWTC 3 cut(s) 204, 253, 983
PflFI GACNNNGTC 1 cut(s) 953
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 3 cut(s) 451, 525, 546
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PshBI ATTAAT 1 cut(s) 761
PspPI GGNCC 1 cut(s) 653
PsuI RGATCY 1 cut(s) 766
PsyI GACNNNGTC 1 cut(s) 953
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 2 cut(s) 465, 700
SaqAI TTAA 2 cut(s) 761, 861
SatI GCNGC 3 cut(s) 450, 524, 545
Sau3AI GATC 5 cut(s) 6, 388, 766, 829, 1006
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 786
SfaNI GCATC 4 cut(s) 71, 286, 332, 460
SmiMI CAYNNNNRTG 2 cut(s) 465, 700
SsiI CCGC 2 cut(s) 51, 819
SspI AATATT 2 cut(s) 137, 639
SspMI CTAG 3 cut(s) 23, 143, 1001
StyD4I CCNGG 1 cut(s) 784
TaaI ACNGT 3 cut(s) 215, 713, 944
TaiI ACGT 2 cut(s) 878, 1066
TaqI TCGA 2 cut(s) 570, 828
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 3 cut(s) 204, 253, 983
Tru1I TTAA 2 cut(s) 761, 861
Tru9I TTAA 2 cut(s) 761, 861
TscAI CASTG 1 cut(s) 313
TseI GCWGC 3 cut(s) 449, 523, 544
TspDTI ATGAA 5 cut(s) 355, 363, 472, 632, 962
TspGWI ACGGA 2 cut(s) 870, 966
TspRI CASTG 1 cut(s) 313
Tth111I GACNNNGTC 1 cut(s) 953
Van91I CCANNNNNTGG 1 cut(s) 167
VspI ATTAAT 1 cut(s) 761
XapI RAATTY 3 cut(s) 339, 734, 794
XceI RCATGY 2 cut(s) 464, 703
XspI CTAG 3 cut(s) 23, 143, 1001
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.