Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008491

Physical Location & Seq

Genomic Coordinates Reverse (-)

13753503 .. 13755427

Gene Structure 1925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAAGCTGTATTCGGGATGGCTCTAGCCACCATCATTTTGACAAGCATGGCAACCATGGCGGCATCAGCAGCATCTCCAGCCACATTTGTGTTCGGTGACTCGTTAACAGAAGTGGGAAACAACAATTATTTGCAGTATTCTCTTGCAAAGTCAAATTATCCTTGGTACGGGGTCGATTATGAAGGTCGTCAGGCTACCGGGAGATTCACAAATGGAAGAACTATTGGTGATATAATATCTGCAAAGCTTGGGATTCCATCACCGCCGCCTTATCTCTCATTGTCAACGAATGATGATGCACTGCTTAAGGGGGTCAACTATGCATCTGGTGGAGCAGGAATACTAAATGACACTGGACTCTATTTTATTGAGAGACTGTCCTTCGATGATCAAGTACAAAGTTTCAACAAGACAAGGGAAGTCATCAAGGCTAAGATTGGGAGTGAAGCTGCAACCAAGCTTTTAACTGAAGCTCTCTATTTCATTGGAATTGGCAGCAATGATTATGTCAATAATTTCTTACAACCCTTTTTACCTGATGGTCAAGAGTACACTCATGATGACTTTGTGGAACTGTTAATAGGCACCTTAGAGCAACAACTTAAGACTCTCTACCAGTTGGGTGCACGAAAGATGATGTTTCATGGTCTTGGTCCACTCGGCTGCATTCCTTCTCAGAGGGTTAAATCAAAGAAAGGCCGATGCTTGAAGAAAGTCAACACGTGGGTGCTGGAATTCAACTCTAAAGTAGAGAAGCTCATTGCCACTCTTAACAGACGCCTCCCAAAAGCAAAATTATCATTTGCAGATACATATTCAGATGTTCTTGACTTAATCAGCAACCCTACCACATATGGTTTTAAGGTTTCCAATACGTCATGTTGCAATGTAGACACGAGCATTGGAGGGCTATGCTTACCGAATTCAAAAATATGCAGCAACCGCAAAGATTATGTATTCTGGGATGCATTCCACCCCTCAGATGCAGCAAATGCAGTTCTTGCTGACAAACTCTTCTTGAGACTATTTTCTATGCCTCCAACCCCTGCACCAACACCTTCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

356

Amino Acids

38.98

Weight (kDa)

8.09

Isoelectric Point (pI)

26.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	30 - 339	3.9e-39	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37690 AT5G37690
fragaria_vesca	FvH4_1g30370 FvH4_1g30370
malus_domestica	MD00G1116600.v1.1 MD09G1274700.v1.1
prunus_persica	Prupe.3G016500_v2.0.a1 Prupe.3G016500_v2.0.a1
pyrus_communis	pycom09g18520 pycom17g26830
rosa_chinensis	RchiOBHm_Chr3g0490271
rosa_laevigata	RLG00000022891
rosa_multiflora	Rmu_sc0002489.1_g000011 Rmu_sc0014425.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393610
rosa_rugosa	Rorug03G0243500 Rorug03G0243600
rosa_samantha	Rh3AG291900 Rh3BG329300 Rh3CG326300 Rh3DG325200
rosa_wichuraiana	Rw3G025870 Rw3G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	894
AciI	CCGC	4 cut(s)	62, 266, 269, 946
AcsI	RAATTY	2 cut(s)	737, 925
AcuI	CTGAAG	1 cut(s)	492
AcvI	CACGTG	1 cut(s)	726
AcyI	GRCGYC	1 cut(s)	781
AfaI	GTAC	3 cut(s)	170, 399, 554
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflII	CTTAAG	2 cut(s)	308, 605
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	4 cut(s)	409, 712, 742, 930
AleI	CACNNNNGTG	2 cut(s)	89, 728
AluBI	AGCT	6 cut(s)	8, 250, 452, 463, 476, 760
AluI	AGCT	6 cut(s)	8, 250, 452, 463, 476, 760
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	2 cut(s)	370, 1018
Alw44I	GTGCAC	1 cut(s)	627
AoxI	GGCC	1 cut(s)	700
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	6 cut(s)	71, 452, 498, 666, 939, 989
ApoI	RAATTY	2 cut(s)	737, 925
AspS9I	GGNCC	1 cut(s)	656
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	110, 242, 255
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	631
BanI	GGYRCC	1 cut(s)	587
BauI	CACGAG	1 cut(s)	898
BbrPI	CACGTG	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	6 cut(s)	83, 439, 510, 653, 951, 1001
BccI	CCATC	4 cut(s)	13, 41, 268, 536
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	370, 1018
BfaI	CTAG	1 cut(s)	26
BfrI	CTTAAG	2 cut(s)	308, 605
BisI	GCNGC	8 cut(s)	63, 72, 269, 453, 499, 667, 940, 990
BlsI	GCNGC	8 cut(s)	64, 73, 270, 454, 500, 668, 941, 991
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	7 cut(s)	74, 83, 289, 335, 695, 958, 976
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	1042
BpuMI	CCSGG	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	726
BsaHI	GRCGYC	1 cut(s)	781
BsaJI	CCNNGG	2 cut(s)	57, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	361, 619
Bse3DI	GCAATG	3 cut(s)	508, 762, 895
BseDI	CCNNGG	2 cut(s)	57, 164
BseGI	GGATG	2 cut(s)	24, 973
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	3 cut(s)	508, 762, 895
BseMII	CTCAG	2 cut(s)	692, 996
BseNI	ACTGG	2 cut(s)	361, 619
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	6 cut(s)	83, 439, 510, 653, 951, 1001
BsgI	GTGCAG	1 cut(s)	1035
BshFI	GGCC	1 cut(s)	702
BshNI	GGYRCC	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	2 cut(s)	370, 1018
BsmI	GAATGC	2 cut(s)	669, 971
BsnI	GGCC	1 cut(s)	702
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	1 cut(s)	391
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	4 cut(s)	62, 266, 269, 946
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	2 cut(s)	691, 995
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	589
BspT107I	GGYRCC	1 cut(s)	587
BspTI	CTTAAG	2 cut(s)	308, 605
BsrDI	GCAATG	3 cut(s)	508, 762, 895
BsrI	ACTGG	2 cut(s)	361, 619
BssECI	CCNNGG	2 cut(s)	57, 164
BssMI	GATC	1 cut(s)	391
BssNI	GRCGYC	1 cut(s)	781
BssSI	CACGAG	1 cut(s)	898
BssT1I	CCWWGG	2 cut(s)	57, 164
Bst2BI	CACGAG	1 cut(s)	898
Bst4CI	ACNGT	2 cut(s)	381, 579
Bst6I	CTCTTC	1 cut(s)	1022
BstACI	GRCGYC	1 cut(s)	781
BstAFI	CTTAAG	2 cut(s)	308, 605
BstAPI	GCANNNNNTGC	2 cut(s)	995, 1004
BstBAI	YACGTR	1 cut(s)	726
BstDEI	CTNAG	4 cut(s)	435, 592, 678, 982
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	24, 973
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	2 cut(s)	370, 1018
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 68, 71, 80, 945, 995, 1004
BstSCI	CCNGG	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	631
BstV1I	GCAGC	6 cut(s)	83, 439, 510, 653, 951, 1001
BsuRI	GGCC	1 cut(s)	702
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	24, 973
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	302, 354
CciI	TCATGA	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	656
CseI	GACGC	1 cut(s)	789
Csp6I	GTAC	3 cut(s)	169, 398, 553
CviAII	CATG	5 cut(s)	49, 58, 560, 647, 882
CviQI	GTAC	3 cut(s)	169, 398, 553
DdeI	CTNAG	4 cut(s)	435, 592, 678, 982
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	1022
EarI	CTCTTC	1 cut(s)	1022
Eco130I	CCWWGG	2 cut(s)	57, 164
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	492
Eco72I	CACGTG	1 cut(s)	726
EcoRI	GAATTC	2 cut(s)	737, 925
EcoT14I	CCWWGG	2 cut(s)	57, 164
EcoT22I	ATGCAT	2 cut(s)	328, 973
ErhI	CCWWGG	2 cut(s)	57, 164
FaeI	CATG	5 cut(s)	52, 61, 563, 650, 885
FatI	CATG	5 cut(s)	48, 57, 559, 646, 881
FauNDI	CATATG	1 cut(s)	856
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	8 cut(s)	63, 72, 269, 453, 499, 667, 940, 990
FokI	GGATG	2 cut(s)	31, 980
Fsp4HI	GCNGC	8 cut(s)	63, 72, 269, 453, 499, 667, 940, 990
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	8 cut(s)	63, 72, 269, 453, 499, 667, 940, 990
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	789
Hin1I	GRCGYC	1 cut(s)	781
Hin1II	CATG	5 cut(s)	52, 61, 563, 650, 885
HincII	GTYRAC	4 cut(s)	108, 288, 319, 721
HindII	GTYRAC	4 cut(s)	108, 288, 319, 721
HindIII	AAGCTT	2 cut(s)	248, 461
HinfI	GANTC	5 cut(s)	101, 207, 256, 360, 610
HpaI	GTTAAC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	3 cut(s)	110, 242, 255
Hpy166II	GTNNAC	8 cut(s)	108, 288, 319, 555, 629, 659, 721, 895
Hpy188I	TCNGA	3 cut(s)	681, 823, 985
Hpy188III	TCNNGA	5 cut(s)	16, 548, 560, 830, 1021
Hpy8I	GTNNAC	8 cut(s)	108, 288, 319, 555, 629, 659, 721, 895
HpyAV	CCTTC	4 cut(s)	179, 394, 684, 1071
HpyCH4III	ACNGT	2 cut(s)	381, 579
HpyCH4IV	ACGT	2 cut(s)	725, 878
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 68, 71, 80, 945, 995, 1004
HpyF3I	CTNAG	4 cut(s)	435, 592, 678, 982
HpySE526I	ACGT	2 cut(s)	725, 878
Hsp92I	GRCGYC	1 cut(s)	781
Hsp92II	CATG	5 cut(s)	52, 61, 563, 650, 885
Ksp22I	TGATCA	1 cut(s)	391
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	6 cut(s)	83, 439, 510, 653, 951, 1001
LweI	GCATC	7 cut(s)	74, 83, 289, 335, 695, 958, 976
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	2 cut(s)	725, 878
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	231, 724, 1009
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	7 cut(s)	127, 157, 492, 517, 737, 797, 925
MlyI	GAGTC	3 cut(s)	95, 354, 604
MmeI	TCCRAC	1 cut(s)	1067
MnlI	CCTC	5 cut(s)	675, 794, 902, 991, 1050
Mph1103I	ATGCAT	2 cut(s)	328, 973
MseI	TTAA	9 cut(s)	107, 309, 467, 581, 606, 687, 774, 836, 864
MslI	CAYNNNNRTG	2 cut(s)	89, 728
MspCI	CTTAAG	2 cut(s)	308, 605
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	202
Mva1269I	GAATGC	2 cut(s)	669, 971
MwoI	GCNNNNNNNGC	7 cut(s)	59, 68, 71, 80, 945, 995, 1004
NciI	CCSGG	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	57
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	5 cut(s)	52, 61, 563, 650, 885
NlaIV	GGNNCC	1 cut(s)	589
NmeAIII	GCCGAG	1 cut(s)	642
NmuCI	GTSAC	1 cut(s)	98
NsiI	ATGCAT	2 cut(s)	328, 973
OliI	CACNNNNGTG	2 cut(s)	89, 728
PagI	TCATGA	1 cut(s)	559
PctI	GAATGC	2 cut(s)	669, 971
PfeI	GAWTC	2 cut(s)	207, 256
PkrI	GCNGC	8 cut(s)	64, 73, 270, 454, 500, 668, 941, 991
PleI	GAGTC	3 cut(s)	95, 354, 604
PmaCI	CACGTG	1 cut(s)	726
PmlI	CACGTG	1 cut(s)	726
PpsI	GAGTC	3 cut(s)	95, 354, 604
Ppu21I	YACGTR	1 cut(s)	726
PspCI	CACGTG	1 cut(s)	726
PspN4I	GGNNCC	1 cut(s)	589
PspPI	GGNCC	1 cut(s)	656
RsaI	GTAC	3 cut(s)	170, 399, 554
RsaNI	GTAC	3 cut(s)	169, 398, 553
RseI	CAYNNNNRTG	2 cut(s)	89, 728
SaqAI	TTAA	9 cut(s)	107, 309, 467, 581, 606, 687, 774, 836, 864
SatI	GCNGC	8 cut(s)	63, 72, 269, 453, 499, 667, 940, 990
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	3 cut(s)	95, 354, 604
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	7 cut(s)	74, 83, 289, 335, 695, 958, 976
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	2 cut(s)	89, 728
SmlI	CTYRAG	3 cut(s)	308, 605, 1021
SmoI	CTYRAG	3 cut(s)	308, 605, 1021
Sse9I	AATT	7 cut(s)	127, 157, 492, 517, 737, 797, 925
SsiI	CCGC	4 cut(s)	62, 266, 269, 946
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	2 cut(s)	57, 164
TaaI	ACNGT	2 cut(s)	381, 579
TaiI	ACGT	2 cut(s)	728, 881
TaqI	TCGA	2 cut(s)	177, 387
TasI	AATT	7 cut(s)	127, 157, 492, 517, 737, 797, 925
TatI	WGTACW	2 cut(s)	397, 552
TauI	GCSGC	2 cut(s)	65, 271
TfiI	GAWTC	2 cut(s)	207, 256
Tru1I	TTAA	9 cut(s)	107, 309, 467, 581, 606, 687, 774, 836, 864
Tru9I	TTAA	9 cut(s)	107, 309, 467, 581, 606, 687, 774, 836, 864
TscAI	CASTG	2 cut(s)	309, 361
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	6 cut(s)	71, 452, 498, 666, 939, 989
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	198, 475, 635
TspRI	CASTG	2 cut(s)	309, 361
Vha464I	CTTAAG	2 cut(s)	308, 605
VneI	GTGCAC	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	656
XapI	RAATTY	2 cut(s)	737, 925
XmiI	GTMKAC	1 cut(s)	894
XspI	CTAG	1 cut(s)	26
Zsp2I	ATGCAT	2 cut(s)	328, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.