Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008491

Physical Location & Seq

Genomic Coordinates Forward (+)

22759946 .. 22761984

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0243600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGACCCATCTGCACAAATTGAGAACAGCATCCATTCTCAAATGGGTCTCCTCAAATTTTGATGAAAACCACTTCAGACTGTTAGGAACCCCAGCTCGGCCAATTGGGTCTTTCCCCAGTGCCCAAACCCCTAGACTCTACAGAACTAAAAGGAACCCTGTAACTGAAAGCTGTGAAATTACTTCGCCTGAAAATGCTGGTCGAGTTTCTCGTGCTGTTCGACGAGAAGCGCAAGCTGCATTGTTGGACTATTTGTATGGTACTAGAGGCTTGCACTTTGCGGATGCAGAGAATATGAGCAAAAACTCACCGCATTTTCTCAACAAGCTTTTGAATTGCGTTGGTAATGATAAGGAAATCCGGCAGTCGGTTTCCCGGTACTTGCTTTACCACCCTGTTAATGAGTTTGAGCCTTTCTTTGAGAGTTTGGGTTTGAAACCTTCAGAGTATGTTCATTTTCTTCCACCTAATTCCATGTTCTTGATCGATGAGAGTCTGTTGCTCCACAATTATGCTGTTTTGTGTCAGTTTGGGGTTGCGCGTAATAGGATAGGGAAGATTTACAAGGAAGCTACAGAAGTTTTTCGATATGATTTTAAGGTTTTGCAATCAAAACTTCGAGCCTATGAAGAACTGGGTCTCAGTCGATATGCTTTAGTTAAGTTTATTGTTGCTGCTCCTTATTTGTTAGTTGGGGATGTAGATGTGGCATTTGTTGAGGTATTGGAGAAATTGAGGAGCCTTGGATTTGAAACCAGTTGGGTTCAGGGGAACTTATCGGAATCGGATTCTTATAATTGGAGACATATGCTTGGAGTTCTGAGTTTTCTTAGTGATATTGGTTGCAGCAACAAGCAGTTGGGTGTATTACTTGGCCAGCATCCAGATTTTGTGTTTGAGGCTTCAGGGGGAAGGACATTTTTACTAATTGGGATCTTTCTGAAATTTGGATGCTCAATGAGCCAGATATGTTCAATGTTTCTGCAGTTTCCGCAAATTGAAGTTACGAAATTTGTTTCGAATATGAGGAGATGCTTTTTGATCCTGCATGAAATAAAAATGGAGTTTACAGAGATAGGGAAGATTGTGCATTCTCAACCCCTGCTACTGGGTTCCATTGCATTGAAAAGTACCAACACCTTACTTCTTCACTTAAAGATCGGGAAGAAGGAGCTGTCTAGATACATCCAGGAGAACCCGCAAGAAATGAAGAATTGGGTATTTGGTAGAACACTTAGGCCATTAGAGCTGGGAGAGAACCTCAGATCAAAGACACACAAGATGAAGTTTTTGTTAGATATAGGATTTGTAGAGAACCCTAACAAAATAACAGAAGCGGTAAATCAGTTTCAAGGCAATGGATGGGAGCTTCAGGAAAGATTTGATTGCATTGTGGAAGCTGGTTTAGATCGTGATGAAGTCTGTAAACTGATTAAAAGATATCCTCTAGTTCTTTGTCAGTCAAAGAAACTTCTAGAAATGAAGATTGATCTCCTTGTAAATCATTTGTGTTATCCCTTATCAACTGTGCTGTCCTTCCCAAGATATCTTACCTGTGGAATTAAAAGGGTCAAGCATAGGGTATTCATGTACAATTGGCTCAAAGATCAAGGAACAGTTGAACCTGGTTCTGCCTTGAGCACTATTTTATATCCCTCAGATCTATGTTTTCTGAGGAAGTTTGTAAATCATCATCCTTGTGGTCTTGAAGTTTGGCAGGATTTGAAGAATAAAATTTATTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

582

Amino Acids

66.95

Weight (kDa)

8.99

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	274 - 438	2.3e-09	mTERF
mTERF	PF02536	457 - 557	6.8e-13	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37690 AT5G37690
fragaria_vesca	FvH4_1g30370 FvH4_1g30370
malus_domestica	MD00G1116600.v1.1 MD09G1274700.v1.1
prunus_persica	Prupe.3G016500_v2.0.a1 Prupe.3G016500_v2.0.a1
pyrus_communis	pycom09g18520 pycom17g26830
rosa_chinensis	RchiOBHm_Chr3g0490271
rosa_laevigata	RLG00000022891
rosa_multiflora	Rmu_sc0002489.1_g000011 Rmu_sc0014425.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393610
rosa_rugosa	Rorug03G0243500 Rorug03G0243600
rosa_samantha	Rh3AG291900 Rh3BG329300 Rh3CG326300 Rh3DG325200
rosa_wichuraiana	Rw3G025870 Rw3G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
AccII	CGCG	1 cut(s)	541
AciI	CCGC	5 cut(s)	281, 311, 992, 1199, 1337
AclWI	GGATC	2 cut(s)	941, 1036
AcoI	YGGCCR	2 cut(s)	98, 874
AcsI	RAATTY	4 cut(s)	55, 944, 1010, 1734
AcuI	CTGAAG	4 cut(s)	58, 426, 888, 1355
AfaI	GTAC	4 cut(s)	262, 380, 1132, 1592
AfiI	CCNNNNNNNGG	3 cut(s)	96, 367, 1108
AjnI	CCWGG	2 cut(s)	1188, 1624
AluBI	AGCT	9 cut(s)	95, 171, 236, 328, 572, 1174, 1249, 1369, 1400
AluI	AGCT	9 cut(s)	95, 171, 236, 328, 572, 1174, 1249, 1369, 1400
Alw21I	GWGCWC	1 cut(s)	1643
Alw26I	GTCTC	3 cut(s)	52, 644, 796
AlwI	GGATC	2 cut(s)	941, 1036
AoxI	GGCC	3 cut(s)	98, 874, 1238
ApeKI	GCWGC	3 cut(s)	236, 674, 846
ApoI	RAATTY	4 cut(s)	55, 944, 1010, 1734
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	2 cut(s)	232, 541
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	300
AsuII	TTCGAA	1 cut(s)	1019
BaeGI	GKGCMC	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	876
BauI	CACGAG	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	1643
BbvI	GCAGC	3 cut(s)	223, 661, 858
BccI	CCATC	2 cut(s)	15, 1356
BciT130I	CCWGG	2 cut(s)	1190, 1626
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	3 cut(s)	52, 644, 796
BfaI	CTAG	5 cut(s)	132, 264, 1179, 1448, 1475
BfmI	CTRYAG	3 cut(s)	139, 573, 983
BglII	AGATCT	1 cut(s)	1660
BisI	GCNGC	3 cut(s)	237, 675, 847
BlsI	GCNGC	3 cut(s)	238, 676, 848
Bme1390I	CCNGG	3 cut(s)	376, 1190, 1626
BmiI	GGNNCC	4 cut(s)	88, 155, 740, 1114
BmrFI	CCNGG	3 cut(s)	376, 1190, 1626
BmrI	ACTGGG	3 cut(s)	111, 644, 1118
BmsI	GCATC	5 cut(s)	38, 274, 889, 941, 1022
BmuI	ACTGGG	3 cut(s)	111, 644, 1118
BplI	GAGNNNNNCTC	2 cut(s)	1245, 1277
Bpu14I	TTCGAA	1 cut(s)	1019
BpuEI	CTTGAG	1 cut(s)	1657
BpuMI	CCSGG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	486
BsaI	GGTCTC	2 cut(s)	52, 644
BsaJI	CCNNGG	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 367, 1108
Bse1I	ACTGG	4 cut(s)	117, 639, 756, 1113
Bse3DI	GCAATG	2 cut(s)	1116, 1363
BseBI	CCWGG	2 cut(s)	1190, 1626
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	742
BseGI	GGATG	8 cut(s)	29, 289, 703, 880, 956, 1185, 1367, 1693
BseLI	CCNNNNNNNGG	3 cut(s)	96, 367, 1108
BseMI	GCAATG	2 cut(s)	1116, 1363
BseMII	CTCAG	5 cut(s)	655, 812, 1276, 1664, 1671
BseNI	ACTGG	4 cut(s)	117, 639, 756, 1113
BseRI	GAGGAG	3 cut(s)	40, 751, 1042
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	223, 661, 858
BseYI	CCCAGC	2 cut(s)	91, 1249
Bsh1236I	CGCG	1 cut(s)	541
BshFI	GGCC	3 cut(s)	100, 876, 1240
BshVI	ATCGAT	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	1643
BsiSI	CCGG	2 cut(s)	361, 376
BslI	CCNNNNNNNGG	3 cut(s)	96, 367, 1108
BsmAI	GTCTC	3 cut(s)	52, 644, 796
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	3 cut(s)	100, 876, 1240
Bso31I	GGTCTC	2 cut(s)	52, 644
Bsp119I	TTCGAA	1 cut(s)	1019
Bsp1286I	GDGCHC	2 cut(s)	124, 1643
Bsp1407I	TGTACA	1 cut(s)	1590
Bsp143I	GATC	9 cut(s)	483, 933, 1041, 1158, 1265, 1408, 1489, 1606, 1660
BspACI	CCGC	5 cut(s)	281, 311, 992, 1199, 1337
BspANI	GGCC	3 cut(s)	100, 876, 1240
BspCNI	CTCAG	5 cut(s)	654, 813, 1275, 1665, 1670
BspDI	ATCGAT	1 cut(s)	486
BspFNI	CGCG	1 cut(s)	541
BspLI	GGNNCC	4 cut(s)	88, 155, 740, 1114
BspMAI	CTGCAG	1 cut(s)	987
BspPI	GGATC	2 cut(s)	941, 1036
BspT104I	TTCGAA	1 cut(s)	1019
BspTNI	GGTCTC	2 cut(s)	52, 644
BsrDI	GCAATG	2 cut(s)	1116, 1363
BsrGI	TGTACA	1 cut(s)	1590
BsrI	ACTGG	4 cut(s)	117, 639, 756, 1113
BssECI	CCNNGG	1 cut(s)	742
BssMI	GATC	9 cut(s)	483, 933, 1041, 1158, 1265, 1408, 1489, 1606, 1660
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	742
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	1190, 1626
Bst4CI	ACNGT	3 cut(s)	81, 1528, 1618
BstAUI	TGTACA	1 cut(s)	1590
BstBI	TTCGAA	1 cut(s)	1019
BstC8I	GCNNGC	3 cut(s)	234, 272, 878
BstDEI	CTNAG	7 cut(s)	641, 821, 830, 1235, 1262, 1657, 1673
BstF5I	GGATG	8 cut(s)	29, 289, 703, 880, 956, 1185, 1367, 1693
BstFNI	CGCG	1 cut(s)	541
BstHHI	GCGC	2 cut(s)	232, 541
BstKTI	GATC	9 cut(s)	486, 936, 1044, 1161, 1268, 1411, 1492, 1609, 1663
BstMAI	GTCTC	3 cut(s)	52, 644, 796
BstMBI	GATC	9 cut(s)	483, 933, 1041, 1158, 1265, 1408, 1489, 1606, 1660
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 960, 991, 1246
BstNI	CCWGG	2 cut(s)	1190, 1626
BstSCI	CCNGG	3 cut(s)	374, 1188, 1624
BstSFI	CTRYAG	3 cut(s)	139, 573, 983
BstSLI	GKGCMC	1 cut(s)	124
BstUI	CGCG	1 cut(s)	541
BstV1I	GCAGC	3 cut(s)	223, 661, 858
BstX2I	RGATCY	2 cut(s)	933, 1660
BstYI	RGATCY	2 cut(s)	933, 1660
Bsu15I	ATCGAT	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	100, 876, 1240
BsuTUI	ATCGAT	1 cut(s)	486
BtsCI	GGATG	8 cut(s)	29, 289, 703, 880, 956, 1185, 1367, 1693
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	3 cut(s)	234, 272, 878
CfoI	GCGC	2 cut(s)	232, 541
ClaI	ATCGAT	1 cut(s)	486
CsiI	ACCWGGT	1 cut(s)	1624
Csp6I	GTAC	4 cut(s)	261, 379, 1131, 1591
CviAII	CATG	3 cut(s)	475, 1049, 1588
CviQI	GTAC	4 cut(s)	261, 379, 1131, 1591
DdeI	CTNAG	7 cut(s)	641, 821, 830, 1235, 1262, 1657, 1673
DpnI	GATC	9 cut(s)	485, 935, 1043, 1160, 1267, 1410, 1491, 1608, 1662
DpnII	GATC	9 cut(s)	483, 933, 1041, 1158, 1265, 1408, 1489, 1606, 1660
EaeI	YGGCCR	2 cut(s)	98, 874
Eco130I	CCWWGG	1 cut(s)	742
Eco31I	GGTCTC	2 cut(s)	52, 644
Eco32I	GATATC	2 cut(s)	1442, 1547
Eco57I	CTGAAG	4 cut(s)	58, 426, 888, 1355
EcoRII	CCWGG	2 cut(s)	1188, 1624
EcoRV	GATATC	2 cut(s)	1442, 1547
EcoT14I	CCWWGG	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	742
FaeI	CATG	3 cut(s)	478, 1052, 1591
FatI	CATG	3 cut(s)	474, 1048, 1587
FauI	CCCGC	1 cut(s)	1206
FauNDI	CATATG	1 cut(s)	807
Fnu4HI	GCNGC	3 cut(s)	237, 675, 847
FokI	GGATG	8 cut(s)	16, 296, 710, 867, 963, 1172, 1374, 1680
Fsp4HI	GCNGC	3 cut(s)	237, 675, 847
FspBI	CTAG	5 cut(s)	132, 264, 1179, 1448, 1475
GlaI	GCGC	2 cut(s)	231, 540
GluI	GCNGC	3 cut(s)	237, 675, 847
GsaI	CCCAGC	2 cut(s)	95, 1253
HaeIII	GGCC	3 cut(s)	100, 876, 1240
HapII	CCGG	2 cut(s)	361, 376
HhaI	GCGC	2 cut(s)	232, 541
Hin1II	CATG	3 cut(s)	478, 1052, 1591
Hin6I	GCGC	2 cut(s)	230, 539
HinP1I	GCGC	2 cut(s)	230, 539
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	4 cut(s)	135, 493, 782, 788
HpaII	CCGG	2 cut(s)	361, 376
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	2 cut(s)	1068, 1427
Hpy188III	TCNNGA	8 cut(s)	481, 884, 1162, 1179, 1373, 1412, 1475, 1706
Hpy8I	GTNNAC	2 cut(s)	1068, 1427
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	4 cut(s)	450, 906, 1162, 1546
HpyCH4III	ACNGT	3 cut(s)	81, 1528, 1618
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 960, 991, 1246
HpyF3I	CTNAG	7 cut(s)	641, 821, 830, 1235, 1262, 1657, 1673
Hsp92II	CATG	3 cut(s)	478, 1052, 1591
HspAI	GCGC	2 cut(s)	230, 539
Kzo9I	GATC	9 cut(s)	483, 933, 1041, 1158, 1265, 1408, 1489, 1606, 1660
LmnI	GCTCC	5 cut(s)	507, 682, 738, 1171, 1366
Lsp1109I	GCAGC	3 cut(s)	223, 661, 858
LweI	GCATC	5 cut(s)	38, 274, 889, 941, 1022
MabI	ACCWGGT	1 cut(s)	1624
MaeI	CTAG	5 cut(s)	132, 264, 1179, 1448, 1475
MaeIII	GTNAC	2 cut(s)	160, 1003
MalI	GATC	9 cut(s)	485, 935, 1043, 1160, 1267, 1410, 1491, 1608, 1662
MboI	GATC	9 cut(s)	483, 933, 1041, 1158, 1265, 1408, 1489, 1606, 1660
MboII	GAAGA	9 cut(s)	452, 568, 641, 1093, 1139, 1177, 1222, 1495, 1738
MfeI	CAATTG	2 cut(s)	102, 1594
MflI	RGATCY	2 cut(s)	933, 1660
MhlI	GDGCHC	2 cut(s)	124, 1643
MlsI	TGGCCA	1 cut(s)	876
MluNI	TGGCCA	1 cut(s)	876
MlyI	GAGTC	2 cut(s)	129, 502
MmeI	TCCRAC	1 cut(s)	225
Mox20I	TGGCCA	1 cut(s)	876
MroXI	GAANNNNTTC	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	876
MseI	TTAA	6 cut(s)	399, 597, 660, 1154, 1434, 1563
MslI	CAYNNNNRTG	2 cut(s)	510, 1698
Msp20I	TGGCCA	1 cut(s)	876
MspI	CCGG	2 cut(s)	361, 376
MspR9I	CCNGG	3 cut(s)	376, 1190, 1626
MunI	CAATTG	2 cut(s)	102, 1594
Mva1269I	GAATGC	1 cut(s)	1090
MvaI	CCWGG	2 cut(s)	1190, 1626
MvnI	CGCG	1 cut(s)	541
MwoI	GCNNNNNNNGC	4 cut(s)	236, 960, 991, 1246
NciI	CCSGG	1 cut(s)	376
NdeI	CATATG	1 cut(s)	807
NdeII	GATC	9 cut(s)	483, 933, 1041, 1158, 1265, 1408, 1489, 1606, 1660
NlaIII	CATG	3 cut(s)	478, 1052, 1591
NlaIV	GGNNCC	4 cut(s)	88, 155, 740, 1114
NmeAIII	GCCGAG	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	1019
PcsI	WCGNNNNNNNCGW	2 cut(s)	208, 217
PctI	GAATGC	1 cut(s)	1090
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	782, 788
PfoI	TCCNGGA	1 cut(s)	1188
PkrI	GCNGC	3 cut(s)	238, 676, 848
PleI	GAGTC	2 cut(s)	129, 501
PpsI	GAGTC	2 cut(s)	129, 501
PsiI	TTATAA	1 cut(s)	795
Psp6I	CCWGG	2 cut(s)	1188, 1624
PspFI	CCCAGC	2 cut(s)	91, 1249
PspGI	CCWGG	2 cut(s)	1188, 1624
PspN4I	GGNNCC	4 cut(s)	88, 155, 740, 1114
PstI	CTGCAG	1 cut(s)	987
PsuI	RGATCY	2 cut(s)	933, 1660
RsaI	GTAC	4 cut(s)	262, 380, 1132, 1592
RsaNI	GTAC	4 cut(s)	261, 379, 1131, 1591
RseI	CAYNNNNRTG	2 cut(s)	510, 1698
SaqAI	TTAA	6 cut(s)	399, 597, 660, 1154, 1434, 1563
SatI	GCNGC	3 cut(s)	237, 675, 847
Sau3AI	GATC	9 cut(s)	483, 933, 1041, 1158, 1265, 1408, 1489, 1606, 1660
SchI	GAGTC	2 cut(s)	129, 502
ScrFI	CCNGG	3 cut(s)	376, 1190, 1626
SduI	GDGCHC	2 cut(s)	124, 1643
SexAI	ACCWGGT	1 cut(s)	1624
SfaNI	GCATC	5 cut(s)	38, 274, 889, 941, 1022
SfcI	CTRYAG	3 cut(s)	139, 573, 983
SfuI	TTCGAA	1 cut(s)	1019
SmiMI	CAYNNNNRTG	2 cut(s)	510, 1698
SmlI	CTYRAG	1 cut(s)	1636
SmoI	CTYRAG	1 cut(s)	1636
SsiI	CCGC	5 cut(s)	281, 311, 992, 1199, 1337
SspMI	CTAG	5 cut(s)	132, 264, 1179, 1448, 1475
StyD4I	CCNGG	3 cut(s)	374, 1188, 1624
StyI	CCWWGG	1 cut(s)	742
TaaI	ACNGT	3 cut(s)	81, 1528, 1618
TaqI	TCGA	7 cut(s)	202, 220, 486, 586, 619, 646, 1019
TatI	WGTACW	1 cut(s)	1590
TfiI	GAWTC	2 cut(s)	782, 788
Tru1I	TTAA	6 cut(s)	399, 597, 660, 1154, 1434, 1563
Tru9I	TTAA	6 cut(s)	399, 597, 660, 1154, 1434, 1563
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	3 cut(s)	236, 674, 846
TspDTI	ATGAA	9 cut(s)	78, 443, 642, 1065, 1223, 1298, 1431, 1496, 1576
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	4 cut(s)	55, 944, 1010, 1734
XbaI	TCTAGA	2 cut(s)	1178, 1474
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	5 cut(s)	132, 264, 1179, 1448, 1475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.