Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008491

Physical Location & Seq

Genomic Coordinates Reverse (-)

25145605 .. 25147799

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26830.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCTTTTTATTAATATCGAAATTTATGAGAGACATTCAAAGATGGAAGTGACAATGTGGATGGCTTTAGCTACCACGATTTTCACAACCATGGTAGCCGTGCCTTCATCGGCAGCGAATACCGTGACCTTCGTCTTCGGTGACTCCTTGACAGATGTAGGGAACAACAACTATCTGCAGTATTCTCTTGCAAAGTCAAATTATCCCTGGTATGGTGTCGATTATGTTGGTGGTCGACCTACTGGGAGGTTCAGTAATGGAAGAACCATCGGCGACTTAATATCCGAAAAGCTTGGGATTCCATCGCCACCACCTTATCTATCCTTGTCACGGAACAATGATGCACTGCTTAAAGGGGTCAATTATGCATCTGGTGGAGCAGGAATACTCAATAGCACTGGACTCTATTTTATTCAGAGGCTGAGTTTTGATGATCAAATACAAAATTTCAAAAAGACAACGGAAGTCATCAAGGCTAAGATTGGGGCACAGGCTGCAGCCAAGCTCTTCAAGGAAGCCATCTTCTTCTTGGGACTTGGGAGCAATGATTATATCAACAATTATTTGCAACCCTTTTTACCTACTGGTCGGCAGTACACTCCCGAACAATTTGTGGAATTATTGATGCGTACCTTAGAGGGACAACTTAAGACGCTCTACCACCTGGGTGCCCGAAATATGACGTTCCATGGTCTCGGACCACTTGGCTGCATTCCTTCTCAAAGAGTCAGATCAAACACAGGGCAGTGCTTAAACCAAGTAAACAATATGATGCTACAATTCAACTCCAATGTAGAAAAGCTCCTTGCCTCCCTTGACAGGCAACTCCCAGGGGCAAAAATCTCATTTGCAGACACATACGGAGACGTCCTCGACTTAATCCAAAACCCTACAGCTTACGGGTTTAAGGTTTCGAACCTTCCGTGTTGCAATGTGGCCACAAACATTGGAGGGCTATGCTTGCCTAATTCACAGCTATGCAGCAACCGGAGAGAGTACGTGTTCTGGGATGCATTCCACCCTACCGACGCAGCAAACGCGGCTCTCGCAGATAAACTCTTCAAGAAACTATTCACGCCTCCTTCCGGTGCATCAACACTATTCACGGCTCCTTCCGGTGCACCAGCACCTTCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

380

Amino Acids

41.52

Weight (kDa)

8.76

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37690 AT5G37690
fragaria_vesca	FvH4_1g30370 FvH4_1g30370
malus_domestica	MD00G1116600.v1.1 MD09G1274700.v1.1
prunus_persica	Prupe.3G016500_v2.0.a1 Prupe.3G016500_v2.0.a1
pyrus_communis	pycom09g18520 pycom17g26830
rosa_chinensis	RchiOBHm_Chr3g0490271
rosa_laevigata	RLG00000022891
rosa_multiflora	Rmu_sc0002489.1_g000011 Rmu_sc0014425.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393610
rosa_rugosa	Rorug03G0243500 Rorug03G0243600
rosa_samantha	Rh3AG291900 Rh3BG329300 Rh3CG326300 Rh3DG325200
rosa_wichuraiana	Rw3G025870 Rw3G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	870
AccB1I	GGYRCC	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	235
AccII	CGCG	1 cut(s)	1040
AciI	CCGC	1 cut(s)	1040
AcoI	YGGCCR	1 cut(s)	936
AcsI	RAATTY	2 cut(s)	21, 445
AcyI	GRCGYC	1 cut(s)	867
AfaI	GTAC	3 cut(s)	596, 631, 998
AfiI	CCNNNNNNNGG	4 cut(s)	212, 330, 819, 1085
AflII	CTTAAG	1 cut(s)	647
AflIII	ACRYGT	1 cut(s)	999
AgsI	TTSAA	5 cut(s)	39, 451, 511, 784, 1063
AjnI	CCWGG	3 cut(s)	206, 663, 829
AleI	CACNNNNGTG	1 cut(s)	666
AluBI	AGCT	6 cut(s)	71, 292, 505, 802, 896, 976
AluI	AGCT	6 cut(s)	71, 292, 505, 802, 896, 976
Alw21I	GWGCWC	1 cut(s)	1123
Alw26I	GTCTC	3 cut(s)	25, 698, 858
Alw44I	GTGCAC	1 cut(s)	1119
AlwNI	CAGNNNCTG	1 cut(s)	421
AoxI	GGCC	1 cut(s)	936
ApaLI	GTGCAC	1 cut(s)	1119
ApeKI	GCWGC	6 cut(s)	113, 494, 497, 708, 981, 1031
ApoI	RAATTY	2 cut(s)	21, 445
AseI	ATTAAT	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	1070
AspS9I	GGNCC	1 cut(s)	698
AsuHPI	GGTGA	2 cut(s)	152, 1125
AsuII	TTCGAA	1 cut(s)	914
AvaII	GGWCC	1 cut(s)	698
BaeGI	GKGCMC	3 cut(s)	490, 673, 1123
BalI	TGGCCA	1 cut(s)	938
BanI	GGYRCC	1 cut(s)	668
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	1123
BbvI	GCAGC	6 cut(s)	125, 481, 509, 695, 993, 1043
BccI	CCATC	5 cut(s)	37, 55, 275, 310, 527
BceAI	ACGGC	2 cut(s)	83, 1122
BciT130I	CCWGG	3 cut(s)	208, 665, 831
BclI	TGATCA	1 cut(s)	433
BcoDI	GTCTC	3 cut(s)	25, 698, 858
BfaI	CTAG	1 cut(s)	1138
BfmI	CTRYAG	3 cut(s)	176, 495, 891
BfrI	CTTAAG	1 cut(s)	647
BisI	GCNGC	7 cut(s)	114, 495, 498, 709, 982, 1032, 1041
BlsI	GCNGC	7 cut(s)	115, 496, 499, 710, 983, 1033, 1042
Bme1390I	CCNGG	3 cut(s)	208, 665, 831
Bme18I	GGWCC	1 cut(s)	698
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	2 cut(s)	670, 1110
BmrFI	CCNGG	3 cut(s)	208, 665, 831
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	6 cut(s)	331, 377, 615, 762, 1000, 1100
BmuI	ACTGGG	1 cut(s)	252
BoxI	GACNNNNGTC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	855, 887
Bpu14I	TTCGAA	1 cut(s)	914
BsaAI	YACGTR	1 cut(s)	1000
BsaHI	GRCGYC	1 cut(s)	867
BsaI	GGTCTC	1 cut(s)	698
BsaJI	CCNNGG	6 cut(s)	90, 206, 664, 688, 829, 830
BsaWI	WCCGGW	3 cut(s)	987, 1085, 1115
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 330, 819, 1085
Bse1I	ACTGG	3 cut(s)	247, 403, 589
Bse3DI	GCAATG	2 cut(s)	550, 937
BseBI	CCWGG	3 cut(s)	208, 665, 831
BseDI	CCNNGG	6 cut(s)	90, 206, 664, 688, 829, 830
BseGI	GGATG	2 cut(s)	66, 1015
BseLI	CCNNNNNNNGG	4 cut(s)	212, 330, 819, 1085
BseMI	GCAATG	2 cut(s)	550, 937
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	3 cut(s)	247, 403, 589
BseSI	GKGCMC	3 cut(s)	490, 673, 1123
BseXI	GCAGC	6 cut(s)	125, 481, 509, 695, 993, 1043
Bsh1236I	CGCG	1 cut(s)	1040
BshFI	GGCC	1 cut(s)	938
BshNI	GGYRCC	1 cut(s)	668
BsiHKAI	GWGCWC	1 cut(s)	1123
BsiSI	CCGG	3 cut(s)	988, 1086, 1116
BslFI	GGGAC	2 cut(s)	546, 654
BslI	CCNNNNNNNGG	4 cut(s)	212, 330, 819, 1085
BsmAI	GTCTC	3 cut(s)	25, 698, 858
BsmBI	CGTCTC	1 cut(s)	858
BsmFI	GGGAC	2 cut(s)	546, 654
BsmI	GAATGC	2 cut(s)	711, 1013
BsnI	GGCC	1 cut(s)	938
Bso31I	GGTCTC	1 cut(s)	698
Bsp119I	TTCGAA	1 cut(s)	914
Bsp1286I	GDGCHC	3 cut(s)	490, 673, 1123
Bsp143I	GATC	2 cut(s)	433, 731
Bsp19I	CCATGG	2 cut(s)	90, 688
BspACI	CCGC	1 cut(s)	1040
BspANI	GGCC	1 cut(s)	938
BspCNI	CTCAG	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	1040
BspLI	GGNNCC	2 cut(s)	670, 1110
BspMAI	CTGCAG	2 cut(s)	180, 499
BspQI	GCTCTTC	1 cut(s)	512
BspT104I	TTCGAA	1 cut(s)	914
BspT107I	GGYRCC	1 cut(s)	668
BspTI	CTTAAG	1 cut(s)	647
BspTNI	GGTCTC	1 cut(s)	698
BsrDI	GCAATG	2 cut(s)	550, 937
BsrI	ACTGG	3 cut(s)	247, 403, 589
BssECI	CCNNGG	6 cut(s)	90, 206, 664, 688, 829, 830
BssMI	GATC	2 cut(s)	433, 731
BssNI	GRCGYC	1 cut(s)	867
BssT1I	CCWWGG	2 cut(s)	90, 688
Bst2UI	CCWGG	3 cut(s)	208, 665, 831
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	512, 1064
BstACI	GRCGYC	1 cut(s)	867
BstAFI	CTTAAG	1 cut(s)	647
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstBAI	YACGTR	1 cut(s)	1000
BstBI	TTCGAA	1 cut(s)	914
BstC8I	GCNNGC	1 cut(s)	962
BstDEI	CTNAG	3 cut(s)	422, 477, 634
BstDSI	CCRYGG	2 cut(s)	90, 688
BstF5I	GGATG	2 cut(s)	66, 1015
BstFNI	CGCG	1 cut(s)	1040
BstKTI	GATC	2 cut(s)	436, 734
BstMAI	GTCTC	3 cut(s)	25, 698, 858
BstMBI	GATC	2 cut(s)	433, 731
BstMWI	GCNNNNNNNGC	5 cut(s)	494, 961, 1037, 1040, 1046
BstNI	CCWGG	3 cut(s)	208, 665, 831
BstPAI	GACNNNNGTC	1 cut(s)	131
BstSCI	CCNGG	3 cut(s)	206, 663, 829
BstSFI	CTRYAG	3 cut(s)	176, 495, 891
BstSLI	GKGCMC	3 cut(s)	490, 673, 1123
BstUI	CGCG	1 cut(s)	1040
BstV1I	GCAGC	6 cut(s)	125, 481, 509, 695, 993, 1043
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	938
BtgI	CCRYGG	2 cut(s)	90, 688
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	66, 1015
BtsI	GCAGTG	2 cut(s)	344, 752
BtsIMutI	CAGTG	3 cut(s)	344, 396, 752
Cac8I	GCNNGC	1 cut(s)	962
CaiI	CAGNNNCTG	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	698
CseI	GACGC	2 cut(s)	661, 1037
Csp6I	GTAC	3 cut(s)	595, 630, 997
CspCI	CAANNNNNGTGG	2 cut(s)	928, 963
CviAII	CATG	2 cut(s)	91, 689
CviQI	GTAC	3 cut(s)	595, 630, 997
DdeI	CTNAG	3 cut(s)	422, 477, 634
DpnI	GATC	2 cut(s)	435, 733
DpnII	GATC	2 cut(s)	433, 731
EaeI	YGGCCR	1 cut(s)	936
Eam1104I	CTCTTC	2 cut(s)	512, 1064
EarI	CTCTTC	2 cut(s)	512, 1064
Eco130I	CCWWGG	2 cut(s)	90, 688
Eco31I	GGTCTC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	698
EcoRII	CCWGG	3 cut(s)	206, 663, 829
EcoT14I	CCWWGG	2 cut(s)	90, 688
EcoT22I	ATGCAT	2 cut(s)	370, 1015
ErhI	CCWWGG	2 cut(s)	90, 688
Esp3I	CGTCTC	1 cut(s)	858
FaeI	CATG	2 cut(s)	94, 692
FaqI	GGGAC	2 cut(s)	546, 654
FatI	CATG	2 cut(s)	90, 688
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	7 cut(s)	114, 495, 498, 709, 982, 1032, 1041
FokI	GGATG	2 cut(s)	73, 1022
Fsp4HI	GCNGC	7 cut(s)	114, 495, 498, 709, 982, 1032, 1041
FspBI	CTAG	1 cut(s)	1138
GluI	GCNGC	7 cut(s)	114, 495, 498, 709, 982, 1032, 1041
HaeIII	GGCC	1 cut(s)	938
HapII	CCGG	3 cut(s)	988, 1086, 1116
HgaI	GACGC	2 cut(s)	661, 1037
Hin1I	GRCGYC	1 cut(s)	867
Hin1II	CATG	2 cut(s)	94, 692
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	4 cut(s)	143, 298, 402, 726
HpaII	CCGG	3 cut(s)	988, 1086, 1116
HphI	GGTGA	2 cut(s)	152, 1125
Hpy166II	GTNNAC	4 cut(s)	236, 597, 763, 1121
Hpy188I	TCNGA	4 cut(s)	286, 417, 698, 731
Hpy188III	TCNNGA	2 cut(s)	602, 1063
Hpy8I	GTNNAC	4 cut(s)	236, 597, 763, 1121
Hpy99I	CGWCG	1 cut(s)	1031
HpyAV	CCTTC	7 cut(s)	114, 139, 726, 929, 1092, 1122, 1140
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	3 cut(s)	683, 867, 999
HpyF10VI	GCNNNNNNNGC	5 cut(s)	494, 961, 1037, 1040, 1046
HpyF3I	CTNAG	3 cut(s)	422, 477, 634
HpySE526I	ACGT	3 cut(s)	683, 867, 999
Hsp92I	GRCGYC	1 cut(s)	867
Hsp92II	CATG	2 cut(s)	94, 692
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	433, 731
LguI	GCTCTTC	1 cut(s)	512
LmnI	GCTCC	4 cut(s)	377, 540, 807, 1114
Lsp1109I	GCAGC	6 cut(s)	125, 481, 509, 695, 993, 1043
LweI	GCATC	6 cut(s)	331, 377, 615, 762, 1000, 1100
MaeI	CTAG	1 cut(s)	1138
MaeII	ACGT	3 cut(s)	683, 867, 999
MaeIII	GTNAC	4 cut(s)	49, 124, 140, 327
MalI	GATC	2 cut(s)	435, 733
MboI	GATC	2 cut(s)	433, 731
MboII	GAAGA	6 cut(s)	127, 273, 499, 514, 517, 1051
MhlI	GDGCHC	3 cut(s)	490, 673, 1123
MlsI	TGGCCA	1 cut(s)	938
MluCI	AATT	9 cut(s)	21, 199, 361, 445, 559, 608, 617, 779, 967
MluNI	TGGCCA	1 cut(s)	938
MlyI	GAGTC	3 cut(s)	137, 396, 735
MnlI	CCTC	7 cut(s)	240, 411, 631, 820, 881, 944, 1089
Mox20I	TGGCCA	1 cut(s)	938
Mph1103I	ATGCAT	2 cut(s)	370, 1015
MroXI	GAANNNNTTC	1 cut(s)	1070
MscI	TGGCCA	1 cut(s)	938
MseI	TTAA	7 cut(s)	12, 278, 351, 648, 752, 878, 906
MslI	CAYNNNNRTG	3 cut(s)	89, 666, 976
Msp20I	TGGCCA	1 cut(s)	938
MspCI	CTTAAG	1 cut(s)	647
MspI	CCGG	3 cut(s)	988, 1086, 1116
MspR9I	CCNGG	3 cut(s)	208, 665, 831
Mva1269I	GAATGC	2 cut(s)	711, 1013
MvaI	CCWGG	3 cut(s)	208, 665, 831
MvnI	CGCG	1 cut(s)	1040
MwoI	GCNNNNNNNGC	5 cut(s)	494, 961, 1037, 1040, 1046
NcoI	CCATGG	2 cut(s)	90, 688
NdeII	GATC	2 cut(s)	433, 731
NlaIII	CATG	2 cut(s)	94, 692
NlaIV	GGNNCC	2 cut(s)	670, 1110
NmuCI	GTSAC	4 cut(s)	49, 124, 140, 327
NsiI	ATGCAT	2 cut(s)	370, 1015
NspV	TTCGAA	1 cut(s)	914
OliI	CACNNNNGTG	1 cut(s)	666
PasI	CCCWGGG	1 cut(s)	830
PciSI	GCTCTTC	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	1 cut(s)	920
PctI	GAATGC	2 cut(s)	711, 1013
PdmI	GAANNNNTTC	1 cut(s)	1070
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	7 cut(s)	115, 496, 499, 710, 983, 1033, 1042
PleI	GAGTC	3 cut(s)	137, 396, 734
PpsI	GAGTC	3 cut(s)	137, 396, 734
Ppu21I	YACGTR	1 cut(s)	1000
PshAI	GACNNNNGTC	1 cut(s)	131
PshBI	ATTAAT	1 cut(s)	12
Psp6I	CCWGG	3 cut(s)	206, 663, 829
PspGI	CCWGG	3 cut(s)	206, 663, 829
PspN4I	GGNNCC	2 cut(s)	670, 1110
PspPI	GGNCC	1 cut(s)	698
PstI	CTGCAG	2 cut(s)	180, 499
PstNI	CAGNNNCTG	1 cut(s)	421
RsaI	GTAC	3 cut(s)	596, 631, 998
RsaNI	GTAC	3 cut(s)	595, 630, 997
RseI	CAYNNNNRTG	3 cut(s)	89, 666, 976
SalI	GTCGAC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	512
SaqAI	TTAA	7 cut(s)	12, 278, 351, 648, 752, 878, 906
SatI	GCNGC	7 cut(s)	114, 495, 498, 709, 982, 1032, 1041
Sau3AI	GATC	2 cut(s)	433, 731
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	3 cut(s)	137, 396, 735
ScrFI	CCNGG	3 cut(s)	208, 665, 831
SduI	GDGCHC	3 cut(s)	490, 673, 1123
SfaNI	GCATC	6 cut(s)	331, 377, 615, 762, 1000, 1100
SfcI	CTRYAG	3 cut(s)	176, 495, 891
SfuI	TTCGAA	1 cut(s)	914
SinI	GGWCC	1 cut(s)	698
SmiMI	CAYNNNNRTG	3 cut(s)	89, 666, 976
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
Sse9I	AATT	9 cut(s)	21, 199, 361, 445, 559, 608, 617, 779, 967
SsiI	CCGC	1 cut(s)	1040
SspMI	CTAG	1 cut(s)	1138
StyD4I	CCNGG	3 cut(s)	206, 663, 829
StyI	CCWWGG	2 cut(s)	90, 688
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	3 cut(s)	686, 870, 1002
TaqI	TCGA	5 cut(s)	18, 219, 235, 873, 914
TasI	AATT	9 cut(s)	21, 199, 361, 445, 559, 608, 617, 779, 967
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	1 cut(s)	1043
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	7 cut(s)	12, 278, 351, 648, 752, 878, 906
Tru9I	TTAA	7 cut(s)	12, 278, 351, 648, 752, 878, 906
TscAI	CASTG	3 cut(s)	351, 403, 752
TseFI	GTSAC	4 cut(s)	49, 124, 140, 327
TseI	GCWGC	6 cut(s)	113, 494, 497, 708, 981, 1031
Tsp45I	GTSAC	4 cut(s)	49, 124, 140, 327
TspDTI	ATGAA	1 cut(s)	96
TspGWI	ACGGA	4 cut(s)	346, 476, 876, 912
TspRI	CASTG	3 cut(s)	351, 403, 752
Vha464I	CTTAAG	1 cut(s)	647
VneI	GTGCAC	1 cut(s)	1119
VpaK11BI	GGWCC	1 cut(s)	698
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	2 cut(s)	21, 445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	1070
XspI	CTAG	1 cut(s)	1138
ZraI	GACGTC	1 cut(s)	868
Zsp2I	ATGCAT	2 cut(s)	370, 1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.