Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002489.1

Orthogroup ID

OG0008491

Physical Location & Seq

Genomic Coordinates Forward (+)

34113 .. 35879

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002489.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atggaagctgtattcgggatgtctctagccaccatcattttgacaagcatggcagccatggctgcatcagaagcatctccagccacatttgtgttcggtgactcgttaacagaagtgggaaacaacaattatttgcagtattctcttgcaaagtcaaattttccttggtacggggtcgattatgaaggtggtcaggctaccgggagattcacaaatggaagaactattgctgcaaagcttgggattccatcaccgccgccttatctctcattgtcaacgaatgatgatgcactgcttaagggggtcaactatgcatctggtggagcaggaatactaaatgacactggactctattttattgagagactgtcctttgatgatcaagtacaaagtttcaacaagacaagggaagtcatcaaggctaagattgggagtgaagctgcaaccaagcttttaactgaagctctctatttcattggaattggcagcaatgattatgtcaataatttcttacaaccctttttacctgatggtcaagagtacactcatgatgactttgtggaactgttaataggcaccttagagcaacaacttaagactctctaccagttgggtgcacgaaagatgatgtttcatggtcttggtccactcggctgcattccttctcagagggttaaatcaaagaaaggccaatgcttgaagaaagtcaacaagtgggtgctggaattcaactctaaagtagagaagctcattgcctctcttaacagacgcctcccaaaagcaaaattctcatttgctgatacatattcagatgttcttgacttaatcagcaaccctaccacatatgacacgagcattggagggctatgcttaccgaattcaaaaatatgcacgaaccgcaaagattatgtattctgggatgcattccacccctcagatgcagcaaatgcagttcttgctgacaaactcttcttgagactattttctaagcctccagcccctgcaccaacaccttctcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

340

Amino Acids

37.25

Weight (kDa)

7.61

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37690 AT5G37690
fragaria_vesca	FvH4_1g30370 FvH4_1g30370
malus_domestica	MD00G1116600.v1.1 MD09G1274700.v1.1
prunus_persica	Prupe.3G016500_v2.0.a1 Prupe.3G016500_v2.0.a1
pyrus_communis	pycom09g18520 pycom17g26830
rosa_chinensis	RchiOBHm_Chr3g0490271
rosa_laevigata	RLG00000022891
rosa_multiflora	Rmu_sc0002489.1_g000011 Rmu_sc0014425.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393610
rosa_rugosa	Rorug03G0243500 Rorug03G0243600
rosa_samantha	Rh3AG291900 Rh3BG329300 Rh3CG326300 Rh3DG325200
rosa_wichuraiana	Rw3G025870 Rw3G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	575
AciI	CCGC	3 cut(s)	254, 257, 898
AcsI	RAATTY	4 cut(s)	157, 725, 785, 877
AcuI	CTGAAG	1 cut(s)	480
AcyI	GRCGYC	1 cut(s)	769
AfaI	GTAC	3 cut(s)	170, 387, 542
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflII	CTTAAG	2 cut(s)	296, 593
AgsI	TTSAA	4 cut(s)	397, 700, 730, 882
AleI	CACNNNNGTG	1 cut(s)	89
AluBI	AGCT	6 cut(s)	8, 238, 440, 451, 464, 748
AluI	AGCT	6 cut(s)	8, 238, 440, 451, 464, 748
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	3 cut(s)	27, 358, 970
Alw44I	GTGCAC	1 cut(s)	615
AlwNI	CAGNNNCTG	1 cut(s)	1001
AoxI	GGCC	1 cut(s)	688
ApaLI	GTGCAC	1 cut(s)	615
ApeKI	GCWGC	7 cut(s)	53, 62, 230, 440, 486, 654, 941
ApoI	RAATTY	4 cut(s)	157, 725, 785, 877
AspS9I	GGNCC	1 cut(s)	644
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	110, 243
AvaII	GGWCC	1 cut(s)	644
BaeGI	GKGCMC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	575
BauI	CACGAG	1 cut(s)	850
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	7 cut(s)	49, 65, 217, 427, 498, 641, 953
BccI	CCATC	3 cut(s)	41, 256, 524
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	202
BcoDI	GTCTC	3 cut(s)	27, 358, 970
BfaI	CTAG	1 cut(s)	26
BfrI	CTTAAG	2 cut(s)	296, 593
BisI	GCNGC	8 cut(s)	54, 63, 231, 257, 441, 487, 655, 942
BlsI	GCNGC	8 cut(s)	55, 64, 232, 258, 442, 488, 656, 943
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	6 cut(s)	74, 83, 277, 323, 910, 928
BpmI	CTGGAG	2 cut(s)	63, 978
BpuEI	CTTGAG	1 cut(s)	994
BpuMI	CCSGG	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	769
BsaJI	CCNNGG	2 cut(s)	57, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	349, 607
Bse3DI	GCAATG	2 cut(s)	496, 750
BseDI	CCNNGG	2 cut(s)	57, 164
BseGI	GGATG	2 cut(s)	24, 925
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	2 cut(s)	496, 750
BseMII	CTCAG	2 cut(s)	680, 948
BseNI	ACTGG	2 cut(s)	349, 607
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	7 cut(s)	49, 65, 217, 427, 498, 641, 953
BsgI	GTGCAG	1 cut(s)	987
BshFI	GGCC	1 cut(s)	690
BshNI	GGYRCC	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	619
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	3 cut(s)	27, 358, 970
BsmI	GAATGC	2 cut(s)	657, 923
BsnI	GGCC	1 cut(s)	690
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	1 cut(s)	379
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	3 cut(s)	254, 257, 898
BspANI	GGCC	1 cut(s)	690
BspCNI	CTCAG	2 cut(s)	679, 947
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	577
BspT107I	GGYRCC	1 cut(s)	575
BspTI	CTTAAG	2 cut(s)	296, 593
BsrDI	GCAATG	2 cut(s)	496, 750
BsrI	ACTGG	2 cut(s)	349, 607
BssECI	CCNNGG	2 cut(s)	57, 164
BssMI	GATC	1 cut(s)	379
BssNI	GRCGYC	1 cut(s)	769
BssSI	CACGAG	1 cut(s)	850
BssT1I	CCWWGG	2 cut(s)	57, 164
Bst2BI	CACGAG	1 cut(s)	850
Bst4CI	ACNGT	2 cut(s)	369, 567
Bst6I	CTCTTC	1 cut(s)	974
BstACI	GRCGYC	1 cut(s)	769
BstAFI	CTTAAG	2 cut(s)	296, 593
BstAPI	GCANNNNNTGC	2 cut(s)	947, 956
BstDEI	CTNAG	5 cut(s)	423, 580, 666, 934, 987
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	24, 925
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	3 cut(s)	27, 358, 970
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 62, 71, 80, 897, 947, 956
BstSCI	CCNGG	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	619
BstV1I	GCAGC	7 cut(s)	49, 65, 217, 427, 498, 641, 953
BsuRI	GGCC	1 cut(s)	690
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	24, 925
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	2 cut(s)	290, 342
CaiI	CAGNNNCTG	1 cut(s)	1001
CciI	TCATGA	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	644
CseI	GACGC	1 cut(s)	777
Csp6I	GTAC	3 cut(s)	169, 386, 541
CviAII	CATG	4 cut(s)	49, 58, 548, 635
CviQI	GTAC	3 cut(s)	169, 386, 541
DdeI	CTNAG	5 cut(s)	423, 580, 666, 934, 987
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	974
EarI	CTCTTC	1 cut(s)	974
Eco130I	CCWWGG	2 cut(s)	57, 164
Eco47I	GGWCC	1 cut(s)	644
Eco57I	CTGAAG	1 cut(s)	480
EcoRI	GAATTC	2 cut(s)	725, 877
EcoT14I	CCWWGG	2 cut(s)	57, 164
EcoT22I	ATGCAT	2 cut(s)	316, 925
ErhI	CCWWGG	2 cut(s)	57, 164
FaeI	CATG	4 cut(s)	52, 61, 551, 638
FatI	CATG	4 cut(s)	48, 57, 547, 634
FauNDI	CATATG	1 cut(s)	844
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	8 cut(s)	54, 63, 231, 257, 441, 487, 655, 942
FokI	GGATG	2 cut(s)	31, 932
Fsp4HI	GCNGC	8 cut(s)	54, 63, 231, 257, 441, 487, 655, 942
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	8 cut(s)	54, 63, 231, 257, 441, 487, 655, 942
GsuI	CTGGAG	2 cut(s)	63, 978
HaeIII	GGCC	1 cut(s)	690
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	777
Hin1I	GRCGYC	1 cut(s)	769
Hin1II	CATG	4 cut(s)	52, 61, 551, 638
HincII	GTYRAC	4 cut(s)	108, 276, 307, 709
HindII	GTYRAC	4 cut(s)	108, 276, 307, 709
HindIII	AAGCTT	2 cut(s)	236, 449
HinfI	GANTC	5 cut(s)	101, 207, 244, 348, 598
HpaI	GTTAAC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	2 cut(s)	110, 243
Hpy166II	GTNNAC	7 cut(s)	108, 276, 307, 543, 617, 647, 709
Hpy188I	TCNGA	4 cut(s)	70, 669, 811, 937
Hpy188III	TCNNGA	5 cut(s)	16, 536, 548, 818, 973
Hpy8I	GTNNAC	7 cut(s)	108, 276, 307, 543, 617, 647, 709
HpyAV	CCTTC	3 cut(s)	179, 672, 1023
HpyCH4III	ACNGT	2 cut(s)	369, 567
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 62, 71, 80, 897, 947, 956
HpyF3I	CTNAG	5 cut(s)	423, 580, 666, 934, 987
Hsp92I	GRCGYC	1 cut(s)	769
Hsp92II	CATG	4 cut(s)	52, 61, 551, 638
Ksp22I	TGATCA	1 cut(s)	379
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	7 cut(s)	49, 65, 217, 427, 498, 641, 953
LweI	GCATC	6 cut(s)	74, 83, 277, 323, 910, 928
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	3 cut(s)	231, 712, 961
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	7 cut(s)	127, 157, 480, 505, 725, 785, 877
MlyI	GAGTC	3 cut(s)	95, 342, 592
MnlI	CCTC	6 cut(s)	663, 766, 782, 854, 943, 1002
Mph1103I	ATGCAT	2 cut(s)	316, 925
MseI	TTAA	8 cut(s)	107, 297, 455, 569, 594, 675, 762, 824
MslI	CAYNNNNRTG	1 cut(s)	89
MspCI	CTTAAG	2 cut(s)	296, 593
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	202
Mva1269I	GAATGC	2 cut(s)	657, 923
MwoI	GCNNNNNNNGC	7 cut(s)	59, 62, 71, 80, 897, 947, 956
NciI	CCSGG	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	57
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	4 cut(s)	52, 61, 551, 638
NlaIV	GGNNCC	1 cut(s)	577
NmeAIII	GCCGAG	1 cut(s)	630
NmuCI	GTSAC	1 cut(s)	98
NsiI	ATGCAT	2 cut(s)	316, 925
OliI	CACNNNNGTG	1 cut(s)	89
PagI	TCATGA	1 cut(s)	547
PctI	GAATGC	2 cut(s)	657, 923
PfeI	GAWTC	2 cut(s)	207, 244
PkrI	GCNGC	8 cut(s)	55, 64, 232, 258, 442, 488, 656, 943
PleI	GAGTC	3 cut(s)	95, 342, 592
PpsI	GAGTC	3 cut(s)	95, 342, 592
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	644
PstNI	CAGNNNCTG	1 cut(s)	1001
RsaI	GTAC	3 cut(s)	170, 387, 542
RsaNI	GTAC	3 cut(s)	169, 386, 541
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	8 cut(s)	107, 297, 455, 569, 594, 675, 762, 824
SatI	GCNGC	8 cut(s)	54, 63, 231, 257, 441, 487, 655, 942
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	3 cut(s)	95, 342, 592
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	6 cut(s)	74, 83, 277, 323, 910, 928
SinI	GGWCC	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	3 cut(s)	296, 593, 973
SmoI	CTYRAG	3 cut(s)	296, 593, 973
Sse9I	AATT	7 cut(s)	127, 157, 480, 505, 725, 785, 877
SsiI	CCGC	3 cut(s)	254, 257, 898
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	2 cut(s)	57, 164
TaaI	ACNGT	2 cut(s)	369, 567
TaqI	TCGA	1 cut(s)	177
TasI	AATT	7 cut(s)	127, 157, 480, 505, 725, 785, 877
TatI	WGTACW	2 cut(s)	385, 540
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	207, 244
Tru1I	TTAA	8 cut(s)	107, 297, 455, 569, 594, 675, 762, 824
Tru9I	TTAA	8 cut(s)	107, 297, 455, 569, 594, 675, 762, 824
TscAI	CASTG	2 cut(s)	297, 349
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	7 cut(s)	53, 62, 230, 440, 486, 654, 941
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	198, 463, 623
TspRI	CASTG	2 cut(s)	297, 349
Vha464I	CTTAAG	2 cut(s)	296, 593
VneI	GTGCAC	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	644
XapI	RAATTY	4 cut(s)	157, 725, 785, 877
XspI	CTAG	1 cut(s)	26
Zsp2I	ATGCAT	2 cut(s)	316, 925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.