Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008491

Physical Location & Seq

Genomic Coordinates Reverse (-)

19334303 .. 19336249

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g18520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTGGATGGCTTTAGCTACCACCATTTTCACAACCATGGTAGCCGTCGCTTCATCGGCAGCGTCTACCGTGACCTTCGTCTTCGGTGACTCCTTGACAGAAGTAGGGAACAACAACTATCTGTCGTATTCTCTTGCAAGGTCAAATTATCCTTGGTATGGTGTCGATTATGACGGTGGTCGAGCTACTGGGAGGTTCACTAATGGAAGAACCATTGGCGACATAATATCCAAAAAGCTTGGGATTCCATCACCACCACCTTATCTATCCTTGGCACAGAATGATGATGCACTGCTTAAAGGGGTTAATTATGCATCTGGCGGAGCAGGAATACTCAATGACACTGGACTCTATTTTATTCAGAGAATGTCGTTTGATGATCAAATACAAAATTTCAACAAGACAAGGGAAGCCATCAAGGCTAAGATTGGGGCAGAGGCTGCAGCCAAGCTTTGCAGTGAAGCCATCTACTTCATTGGACTTGGCAGCAATGATTATGTCAACAATTACCTGCAACCCTTTTTAGCTGATAGTCAGCAGTACACTTATGATGAATTTGTGGAATTATTGATCGGTACCTTAGAGGGACAACTTAAGAGGCTCTACCAGCTGGGTGCCCGAAAGATGGTGTTCCATGGTCTCGGACCACTTGGCTGCATTCCTTCTCAGAGGGTGAAATCAAAGACAGGCCAGTGCTTGAAAAGAGTGAACGAGTGGGTGCTAGAATTCAACTCCAAAGTACAAAAGCTCATTGCCTCTCTTACCAGGCAGCTCCCACAGGCAAAGCTCTCATTTGCAGACACGTATGGAGACGTCTACGACTTAATCCAAAACCCTACCGCTTATGGGTTCAAGGTTTCGAACACTTCGTGTTGCAATGTGGACACAGACATTGGAGGGCTATGCTTGCCTAATTCAAAGCTATGCCCCAACCGGAAAGACTACGTATTCTGGGATGCATTCCACCCATCCGACGCAGCCAATGCGGTTCTCGCCGACAAACTCTTCTCGAGGCTATTTTCCCCGATTCCTTCTAGTGCACCAACACCAGCACCTTCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

355

Amino Acids

38.72

Weight (kDa)

8.04

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37690 AT5G37690
fragaria_vesca	FvH4_1g30370 FvH4_1g30370
malus_domestica	MD00G1116600.v1.1 MD09G1274700.v1.1
prunus_persica	Prupe.3G016500_v2.0.a1 Prupe.3G016500_v2.0.a1
pyrus_communis	pycom09g18520 pycom17g26830
rosa_chinensis	RchiOBHm_Chr3g0490271
rosa_laevigata	RLG00000022891
rosa_multiflora	Rmu_sc0002489.1_g000011 Rmu_sc0014425.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393610
rosa_rugosa	Rorug03G0243500 Rorug03G0243600
rosa_samantha	Rh3AG291900 Rh3BG329300 Rh3CG326300 Rh3DG325200
rosa_wichuraiana	Rw3G025870 Rw3G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	816
Acc36I	ACCTGC	1 cut(s)	519
Acc65I	GGTACC	1 cut(s)	575
AccB1I	GGYRCC	2 cut(s)	575, 614
AccI	GTMKAC	2 cut(s)	65, 816
AciI	CCGC	3 cut(s)	321, 840, 986
AcsI	RAATTY	3 cut(s)	391, 554, 725
AcyI	GRCGYC	1 cut(s)	813
AdeI	CACNNNGTG	1 cut(s)	870
AfaI	GTAC	3 cut(s)	542, 577, 741
AfiI	CCNNNNNNNGG	3 cut(s)	158, 625, 846
AflII	CTTAAG	1 cut(s)	593
AflIII	ACRYGT	1 cut(s)	801
AgsI	TTSAA	5 cut(s)	397, 700, 730, 853, 918
AjnI	CCWGG	1 cut(s)	764
Alw21I	GWGCWC	1 cut(s)	1042
Alw26I	GTCTC	2 cut(s)	644, 804
Alw44I	GTGCAC	1 cut(s)	1038
AlwNI	CAGNNNCTG	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	1009
AoxI	GGCC	1 cut(s)	688
ApaLI	GTGCAC	1 cut(s)	1038
ApeKI	GCWGC	7 cut(s)	59, 440, 443, 486, 654, 769, 977
ApoI	RAATTY	3 cut(s)	391, 554, 725
Asp718I	GGTACC	1 cut(s)	575
AspS9I	GGNCC	1 cut(s)	644
AsuHPI	GGTGA	4 cut(s)	98, 243, 685, 1050
AsuII	TTCGAA	1 cut(s)	860
AvaI	CYCGRG	1 cut(s)	1009
AvaII	GGWCC	1 cut(s)	644
BaeGI	GKGCMC	2 cut(s)	619, 1042
BanI	GGYRCC	2 cut(s)	575, 614
BbsI	GAAGAC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	1042
BbvI	GCAGC	7 cut(s)	71, 427, 455, 498, 641, 781, 989
BccI	CCATC	5 cut(s)	256, 422, 473, 619, 976
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	766
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	644, 804
BfaI	CTAG	3 cut(s)	722, 1035, 1063
BfmI	CTRYAG	1 cut(s)	441
BfrI	CTTAAG	1 cut(s)	593
BfuAI	ACCTGC	1 cut(s)	519
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	7 cut(s)	60, 441, 444, 487, 655, 770, 978
BlsI	GCNGC	7 cut(s)	61, 442, 445, 488, 656, 771, 979
Bme1390I	CCNGG	1 cut(s)	766
Bme18I	GGWCC	1 cut(s)	644
BmeT110I	CYCGRG	1 cut(s)	1009
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	2 cut(s)	577, 616
BmrFI	CCNGG	1 cut(s)	766
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	277, 323, 946
BmuI	ACTGGG	1 cut(s)	198
BoxI	GACNNNNGTC	2 cut(s)	77, 177
BpiI	GAAGAC	1 cut(s)	73
Bpu14I	TTCGAA	1 cut(s)	860
BsaAI	YACGTR	2 cut(s)	804, 946
BsaHI	GRCGYC	1 cut(s)	813
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	4 cut(s)	36, 152, 270, 634
BsaWI	WCCGGW	1 cut(s)	933
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 625, 846
Bse1I	ACTGG	3 cut(s)	193, 349, 691
Bse3DI	GCAATG	3 cut(s)	496, 750, 883
BseBI	CCWGG	1 cut(s)	766
BseDI	CCNNGG	4 cut(s)	36, 152, 270, 634
BseGI	GGATG	3 cut(s)	12, 961, 968
BseLI	CCNNNNNNNGG	3 cut(s)	158, 625, 846
BseMI	GCAATG	3 cut(s)	496, 750, 883
BseMII	CTCAG	1 cut(s)	680
BseNI	ACTGG	3 cut(s)	193, 349, 691
BseSI	GKGCMC	2 cut(s)	619, 1042
BseXI	GCAGC	7 cut(s)	71, 427, 455, 498, 641, 781, 989
BseYI	CCCAGC	1 cut(s)	610
BshFI	GGCC	1 cut(s)	690
BshNI	GGYRCC	2 cut(s)	575, 614
BsiHKAI	GWGCWC	1 cut(s)	1042
BsiHKCI	CYCGRG	1 cut(s)	1009
BsiSI	CCGG	1 cut(s)	934
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	3 cut(s)	158, 625, 846
BsmAI	GTCTC	2 cut(s)	644, 804
BsmBI	CGTCTC	1 cut(s)	804
BsmFI	GGGAC	1 cut(s)	600
BsmI	GAATGC	2 cut(s)	657, 959
BsnI	GGCC	1 cut(s)	690
Bso31I	GGTCTC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	1009
Bsp119I	TTCGAA	1 cut(s)	860
Bsp1286I	GDGCHC	2 cut(s)	619, 1042
Bsp143I	GATC	2 cut(s)	379, 570
Bsp19I	CCATGG	2 cut(s)	36, 634
BspACI	CCGC	3 cut(s)	321, 840, 986
BspANI	GGCC	1 cut(s)	690
BspCNI	CTCAG	1 cut(s)	679
BspLI	GGNNCC	2 cut(s)	577, 616
BspMAI	CTGCAG	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	519
BspT104I	TTCGAA	1 cut(s)	860
BspT107I	GGYRCC	2 cut(s)	575, 614
BspTI	CTTAAG	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	644
BsrDI	GCAATG	3 cut(s)	496, 750, 883
BsrI	ACTGG	3 cut(s)	193, 349, 691
BssECI	CCNNGG	4 cut(s)	36, 152, 270, 634
BssMI	GATC	2 cut(s)	379, 570
BssNI	GRCGYC	1 cut(s)	813
BssT1I	CCWWGG	4 cut(s)	36, 152, 270, 634
Bst2UI	CCWGG	1 cut(s)	766
Bst4CI	ACNGT	2 cut(s)	70, 176
Bst6I	CTCTTC	1 cut(s)	1010
BstACI	GRCGYC	1 cut(s)	813
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	2 cut(s)	440, 983
BstBAI	YACGTR	2 cut(s)	804, 946
BstBI	TTCGAA	1 cut(s)	860
BstC8I	GCNNGC	1 cut(s)	908
BstDEI	CTNAG	3 cut(s)	423, 580, 666
BstDSI	CCRYGG	2 cut(s)	36, 634
BstF5I	GGATG	3 cut(s)	12, 961, 968
BstKTI	GATC	2 cut(s)	382, 573
BstMAI	GTCTC	2 cut(s)	644, 804
BstMBI	GATC	2 cut(s)	379, 570
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 419, 440, 607, 907, 983, 992
BstNI	CCWGG	1 cut(s)	766
BstPAI	GACNNNNGTC	2 cut(s)	77, 177
BstSCI	CCNGG	1 cut(s)	764
BstSFI	CTRYAG	1 cut(s)	441
BstSLI	GKGCMC	2 cut(s)	619, 1042
BstSNI	TACGTA	1 cut(s)	946
BstV1I	GCAGC	7 cut(s)	71, 427, 455, 498, 641, 781, 989
BstV2I	GAAGAC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	690
BtgI	CCRYGG	2 cut(s)	36, 634
BtsCI	GGATG	3 cut(s)	12, 961, 968
BtsI	GCAGTG	2 cut(s)	290, 463
BtsIMutI	CAGTG	4 cut(s)	290, 342, 463, 698
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	908
CaiI	CAGNNNCTG	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	644
CseI	GACGC	2 cut(s)	51, 983
Csp6I	GTAC	3 cut(s)	541, 576, 740
CviAII	CATG	2 cut(s)	37, 635
CviQI	GTAC	3 cut(s)	541, 576, 740
DdeI	CTNAG	3 cut(s)	423, 580, 666
DpnI	GATC	2 cut(s)	381, 572
DpnII	GATC	2 cut(s)	379, 570
DraIII	CACNNNGTG	1 cut(s)	870
Eam1104I	CTCTTC	1 cut(s)	1010
EarI	CTCTTC	1 cut(s)	1010
EciI	GGCGGA	1 cut(s)	336
Eco105I	TACGTA	1 cut(s)	946
Eco130I	CCWWGG	4 cut(s)	36, 152, 270, 634
Eco31I	GGTCTC	1 cut(s)	644
Eco47I	GGWCC	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	1009
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	764
EcoT14I	CCWWGG	4 cut(s)	36, 152, 270, 634
EcoT22I	ATGCAT	2 cut(s)	316, 961
ErhI	CCWWGG	4 cut(s)	36, 152, 270, 634
Esp3I	CGTCTC	1 cut(s)	804
FaeI	CATG	2 cut(s)	40, 638
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	2 cut(s)	36, 634
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	2 cut(s)	65, 816
Fnu4HI	GCNGC	7 cut(s)	60, 441, 444, 487, 655, 770, 978
FokI	GGATG	3 cut(s)	19, 955, 968
Fsp4HI	GCNGC	7 cut(s)	60, 441, 444, 487, 655, 770, 978
FspBI	CTAG	3 cut(s)	722, 1035, 1063
GluI	GCNGC	7 cut(s)	60, 441, 444, 487, 655, 770, 978
GsaI	CCCAGC	1 cut(s)	614
HaeIII	GGCC	1 cut(s)	690
HapII	CCGG	1 cut(s)	934
HgaI	GACGC	2 cut(s)	51, 983
Hin1I	GRCGYC	1 cut(s)	813
Hin1II	CATG	2 cut(s)	40, 638
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	2 cut(s)	236, 449
HinfI	GANTC	4 cut(s)	89, 244, 348, 1027
HpaII	CCGG	1 cut(s)	934
HphI	GGTGA	4 cut(s)	98, 243, 685, 1050
Hpy166II	GTNNAC	8 cut(s)	66, 198, 502, 543, 709, 817, 883, 1040
Hpy188I	TCNGA	4 cut(s)	363, 644, 669, 973
Hpy188III	TCNNGA	1 cut(s)	1009
Hpy8I	GTNNAC	8 cut(s)	66, 198, 502, 543, 709, 817, 883, 1040
Hpy99I	CGWCG	2 cut(s)	50, 977
HpyAV	CCTTC	4 cut(s)	85, 672, 1041, 1065
HpyCH4III	ACNGT	2 cut(s)	70, 176
HpyCH4IV	ACGT	3 cut(s)	803, 813, 945
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 419, 440, 607, 907, 983, 992
HpyF3I	CTNAG	3 cut(s)	423, 580, 666
HpySE526I	ACGT	3 cut(s)	803, 813, 945
Hsp92I	GRCGYC	1 cut(s)	813
Hsp92II	CATG	2 cut(s)	40, 638
KpnI	GGTACC	1 cut(s)	579
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	379, 570
LmnI	GCTCC	2 cut(s)	323, 777
Lsp1109I	GCAGC	7 cut(s)	71, 427, 455, 498, 641, 781, 989
LweI	GCATC	3 cut(s)	277, 323, 946
MaeI	CTAG	3 cut(s)	722, 1035, 1063
MaeII	ACGT	3 cut(s)	803, 813, 945
MaeIII	GTNAC	2 cut(s)	70, 86
MalI	GATC	2 cut(s)	381, 572
MboI	GATC	2 cut(s)	379, 570
MboII	GAAGA	3 cut(s)	73, 219, 997
MhlI	GDGCHC	2 cut(s)	619, 1042
MluCI	AATT	8 cut(s)	145, 307, 391, 505, 554, 563, 725, 913
MlyI	GAGTC	2 cut(s)	83, 342
MmeI	TCCRAC	1 cut(s)	996
MnlI	CCTC	8 cut(s)	186, 430, 577, 591, 663, 766, 890, 1005
Mph1103I	ATGCAT	2 cut(s)	316, 961
MseI	TTAA	4 cut(s)	297, 306, 594, 824
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	610
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	1 cut(s)	934
MspR9I	CCNGG	1 cut(s)	766
Mva1269I	GAATGC	2 cut(s)	657, 959
MvaI	CCWGG	1 cut(s)	766
MwoI	GCNNNNNNNGC	7 cut(s)	56, 419, 440, 607, 907, 983, 992
NcoI	CCATGG	2 cut(s)	36, 634
NdeII	GATC	2 cut(s)	379, 570
NlaIII	CATG	2 cut(s)	40, 638
NlaIV	GGNNCC	2 cut(s)	577, 616
NmuCI	GTSAC	2 cut(s)	70, 86
NsiI	ATGCAT	2 cut(s)	316, 961
NspV	TTCGAA	1 cut(s)	860
PaeR7I	CTCGAG	1 cut(s)	1009
PcsI	WCGNNNNNNNCGW	1 cut(s)	866
PctI	GAATGC	2 cut(s)	657, 959
PfeI	GAWTC	2 cut(s)	244, 1027
PkrI	GCNGC	7 cut(s)	61, 442, 445, 488, 656, 771, 979
PleI	GAGTC	2 cut(s)	83, 342
PpsI	GAGTC	2 cut(s)	83, 342
Ppu21I	YACGTR	2 cut(s)	804, 946
PshAI	GACNNNNGTC	2 cut(s)	77, 177
Psp6I	CCWGG	1 cut(s)	764
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	764
PspN4I	GGNNCC	2 cut(s)	577, 616
PspPI	GGNCC	1 cut(s)	644
PstI	CTGCAG	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	440
PvuII	CAGCTG	1 cut(s)	610
RsaI	GTAC	3 cut(s)	542, 577, 741
RsaNI	GTAC	3 cut(s)	541, 576, 740
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	4 cut(s)	297, 306, 594, 824
SatI	GCNGC	7 cut(s)	60, 441, 444, 487, 655, 770, 978
Sau3AI	GATC	2 cut(s)	379, 570
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	2 cut(s)	83, 342
ScrFI	CCNGG	1 cut(s)	766
SduI	GDGCHC	2 cut(s)	619, 1042
SfaNI	GCATC	3 cut(s)	277, 323, 946
SfcI	CTRYAG	1 cut(s)	441
Sfr274I	CTCGAG	1 cut(s)	1009
SfuI	TTCGAA	1 cut(s)	860
SinI	GGWCC	1 cut(s)	644
SlaI	CTCGAG	1 cut(s)	1009
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	593, 1009
SmoI	CTYRAG	2 cut(s)	593, 1009
SnaBI	TACGTA	1 cut(s)	946
Sse9I	AATT	8 cut(s)	145, 307, 391, 505, 554, 563, 725, 913
SsiI	CCGC	3 cut(s)	321, 840, 986
SspMI	CTAG	3 cut(s)	722, 1035, 1063
StyD4I	CCNGG	1 cut(s)	764
StyI	CCWWGG	4 cut(s)	36, 152, 270, 634
TaaI	ACNGT	2 cut(s)	70, 176
TaiI	ACGT	3 cut(s)	806, 816, 948
TaqI	TCGA	4 cut(s)	165, 181, 860, 1010
TasI	AATT	8 cut(s)	145, 307, 391, 505, 554, 563, 725, 913
TatI	WGTACW	2 cut(s)	540, 739
TfiI	GAWTC	2 cut(s)	244, 1027
Tru1I	TTAA	4 cut(s)	297, 306, 594, 824
Tru9I	TTAA	4 cut(s)	297, 306, 594, 824
TscAI	CASTG	4 cut(s)	297, 349, 463, 698
TseFI	GTSAC	2 cut(s)	70, 86
TseI	GCWGC	7 cut(s)	59, 440, 443, 486, 654, 769, 977
Tsp45I	GTSAC	2 cut(s)	70, 86
TspDTI	ATGAA	3 cut(s)	42, 463, 567
TspRI	CASTG	4 cut(s)	297, 349, 463, 698
Vha464I	CTTAAG	1 cut(s)	593
VneI	GTGCAC	1 cut(s)	1038
VpaK11BI	GGWCC	1 cut(s)	644
XapI	RAATTY	3 cut(s)	391, 554, 725
XhoI	CTCGAG	1 cut(s)	1009
XmiI	GTMKAC	2 cut(s)	65, 816
XspI	CTAG	3 cut(s)	722, 1035, 1063
ZraI	GACGTC	1 cut(s)	814
Zsp2I	ATGCAT	2 cut(s)	316, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.