Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008491

Physical Location & Seq

Genomic Coordinates Forward (+)

1178126 .. 1180908

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G016500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAAGTAATGTTGAGGATTGTTTTAGCCATCACCATTTTCACAACCATGGCAGCAGTGGCTTCATCCGCAGCATCTCCCGTGACGTTCGTCTTCGGTGACTCGTTAACAGAAGTAGGGAACAACAATTATCTGCAGTATTCTCTTGCCAGGTCAAATTATCCATGGTATGGGGTGGATTATGCTGGTGGTCAAGCTACTGGGAGGTTCACTAATGGAAGGACCATTGGGGATATAATATCTGAAAAGCTTGGGATCCCGTCACCGCCACCTTATCTTTCTGTGTCACAAAATGATGATGCACTGCTCAAAGGGGTAAATTATGCATCTGGTGGAGCAGGAATTCTCAATGACACTGGACTCTATTTTATTCAGAGATTGTCCTTTGATGATCAAATACAAAATTTCAACAAGACAAAGGAAGCCATCAAGGCTAAGATCGGGGGAGAGGCGGCAGCCAAGCTTTGCAGTGAAGCCATCTACTTCATCGGAATTGGCAGCAATGATTATGTCAACAATTACTTGCAACCCTTCTTGGCTGATGGTCAGCAGTACACTTACGACGAATTCGTGGAACTATTAATCACCACTTTAGAGGGGCAACTTATGAGGCTCTACAAACTCGGTGCTCGAAAGATGGTCTTCCACGGTCTCGGCCCCCTTGGATGCATTCCTTCTCAGCGGGTGAAATCAAAGACAGGACAATGCTTGAAGCGAGTGAATGAGTGGGTGATAGAATTCAACTCCAAAGTACAAAAGCTAGTTGCATCTCTCAACAGGCGCCTCCCAAAAGCAAAACTCGCATTTGCAGATACATATGGAGATGTTTTCGACTTGATCAACAACCCTGCTGCATATGGTTTCAAGGTCTCTAATACATCGTGTTGCAATGTGGACACATCACTCGGAGGGCTATGCTTGCCTAATTCAAAAATGTGTACAAACCGGAATGACTATGTATTCTGGGATGCATTCCACCCTTCGGATGCAGCAAACGCAGTTCTTGCTGAGAAACTCTTCTCGAGACTATTTCCTCAGCCACCTTCCCTTGCACCGGCACCTTCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

357

Amino Acids

38.92

Weight (kDa)

8.05

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37690 AT5G37690
fragaria_vesca	FvH4_1g30370 FvH4_1g30370
malus_domestica	MD00G1116600.v1.1 MD09G1274700.v1.1
prunus_persica	Prupe.3G016500_v2.0.a1 Prupe.3G016500_v2.0.a1
pyrus_communis	pycom09g18520 pycom17g26830
rosa_chinensis	RchiOBHm_Chr3g0490271
rosa_laevigata	RLG00000022891
rosa_multiflora	Rmu_sc0002489.1_g000011 Rmu_sc0014425.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393610
rosa_rugosa	Rorug03G0243500 Rorug03G0243600
rosa_samantha	Rh3AG291900 Rh3BG329300 Rh3CG326300 Rh3DG325200
rosa_wichuraiana	Rw3G025870 Rw3G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	780, 1057
AccB7I	CCANNNNNTGG	1 cut(s)	170
AciI	CCGC	4 cut(s)	69, 266, 452, 682
AclWI	GGATC	2 cut(s)	250, 263
AcsI	RAATTY	4 cut(s)	342, 403, 566, 737
AcyI	GRCGYC	1 cut(s)	781
AfaI	GTAC	3 cut(s)	554, 753, 940
AfiI	CCNNNNNNNGG	3 cut(s)	170, 982, 1054
AgsI	TTSAA	5 cut(s)	409, 712, 742, 865, 930
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	4 cut(s)	197, 250, 463, 760
AluI	AGCT	4 cut(s)	197, 250, 463, 760
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	3 cut(s)	656, 874, 1018
AlwI	GGATC	2 cut(s)	250, 263
Ama87I	CYCGRG	1 cut(s)	1021
AoxI	GGCC	1 cut(s)	655
ApeKI	GCWGC	6 cut(s)	53, 71, 455, 498, 851, 989
ApoI	RAATTY	4 cut(s)	342, 403, 566, 737
AseI	ATTAAT	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	1016
AspLEI	GCGC	1 cut(s)	783
AspS9I	GGNCC	2 cut(s)	222, 656
AsuHPI	GGTGA	6 cut(s)	25, 110, 255, 577, 697, 742
AvaI	CYCGRG	1 cut(s)	1021
AvaII	GGWCC	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	255
BanI	GGYRCC	2 cut(s)	780, 1057
BbsI	GAAGAC	2 cut(s)	85, 634
Bbv12I	GWGCWC	1 cut(s)	631
BbvCI	CCTCAGC	1 cut(s)	1035
BbvI	GCAGC	6 cut(s)	65, 83, 467, 510, 838, 1001
BccI	CCATC	5 cut(s)	38, 434, 485, 536, 631
BciT130I	CCWGG	1 cut(s)	151
BclI	TGATCA	2 cut(s)	391, 837
BcoDI	GTCTC	3 cut(s)	656, 874, 1018
BfaI	CTAG	1 cut(s)	761
BfmI	CTRYAG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	784
BglI	GCCNNNNNGGC	1 cut(s)	431
BisI	GCNGC	7 cut(s)	54, 72, 453, 456, 499, 852, 990
BlsI	GCNGC	7 cut(s)	55, 73, 454, 457, 500, 853, 991
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	1021
BmgT120I	GGNCC	2 cut(s)	222, 656
BmiI	GGNNCC	4 cut(s)	257, 658, 782, 1059
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	7 cut(s)	83, 289, 335, 656, 776, 958, 976
BmuI	ACTGGG	1 cut(s)	210
BoxI	GACNNNNGTC	1 cut(s)	89
BpiI	GAAGAC	2 cut(s)	85, 634
Bpu10I	CCTNAGC	1 cut(s)	1035
BsaHI	GRCGYC	1 cut(s)	781
BsaI	GGTCTC	2 cut(s)	656, 874
BsaJI	CCNNGG	4 cut(s)	48, 164, 646, 661
BsaWI	WCCGGW	1 cut(s)	945
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 982, 1054
Bse118I	RCCGGY	1 cut(s)	1054
Bse1I	ACTGG	2 cut(s)	205, 361
Bse3DI	GCAATG	2 cut(s)	508, 895
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	4 cut(s)	48, 164, 646, 661
BseGI	GGATG	4 cut(s)	65, 671, 973, 991
BseLI	CCNNNNNNNGG	3 cut(s)	170, 982, 1054
BseMI	GCAATG	2 cut(s)	508, 895
BseMII	CTCAG	3 cut(s)	692, 999, 1049
BseNI	ACTGG	2 cut(s)	205, 361
BseXI	GCAGC	6 cut(s)	65, 83, 467, 510, 838, 1001
BshFI	GGCC	1 cut(s)	657
BshNI	GGYRCC	2 cut(s)	780, 1057
BsiHKAI	GWGCWC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	1021
BsiSI	CCGG	2 cut(s)	946, 1055
BslI	CCNNNNNNNGG	3 cut(s)	170, 982, 1054
BsmAI	GTCTC	3 cut(s)	656, 874, 1018
BsmI	GAATGC	2 cut(s)	669, 971
BsnI	GGCC	1 cut(s)	657
Bso31I	GGTCTC	2 cut(s)	656, 874
BsoBI	CYCGRG	1 cut(s)	1021
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp1407I	TGTACA	1 cut(s)	938
Bsp143I	GATC	4 cut(s)	255, 391, 438, 837
Bsp19I	CCATGG	2 cut(s)	48, 164
BspACI	CCGC	4 cut(s)	69, 266, 452, 682
BspANI	GGCC	1 cut(s)	657
BspCNI	CTCAG	3 cut(s)	691, 1000, 1048
BspLI	GGNNCC	4 cut(s)	257, 658, 782, 1059
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	250, 263
BspT107I	GGYRCC	2 cut(s)	780, 1057
BspTNI	GGTCTC	2 cut(s)	656, 874
BsrDI	GCAATG	2 cut(s)	508, 895
BsrFI	RCCGGY	1 cut(s)	1054
BsrGI	TGTACA	1 cut(s)	938
BsrI	ACTGG	2 cut(s)	205, 361
BssAI	RCCGGY	1 cut(s)	1054
BssECI	CCNNGG	4 cut(s)	48, 164, 646, 661
BssMI	GATC	4 cut(s)	255, 391, 438, 837
BssNI	GRCGYC	1 cut(s)	781
BssT1I	CCWWGG	3 cut(s)	48, 164, 661
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	650
Bst6I	CTCTTC	1 cut(s)	1022
BstACI	GRCGYC	1 cut(s)	781
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstAUI	TGTACA	1 cut(s)	938
BstC8I	GCNNGC	1 cut(s)	920
BstDEI	CTNAG	4 cut(s)	435, 678, 1008, 1035
BstDSI	CCRYGG	3 cut(s)	48, 164, 646
BstF5I	GGATG	4 cut(s)	65, 671, 973, 991
BstH2I	RGCGCY	1 cut(s)	784
BstHHI	GCGC	1 cut(s)	783
BstKTI	GATC	4 cut(s)	258, 394, 441, 840
BstMAI	GTCTC	3 cut(s)	656, 874, 1018
BstMBI	GATC	4 cut(s)	255, 391, 438, 837
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 68, 431, 800, 919, 995, 1004
BstNI	CCWGG	1 cut(s)	151
BstPAI	GACNNNNGTC	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	6 cut(s)	65, 83, 467, 510, 838, 1001
BstV2I	GAAGAC	2 cut(s)	85, 634
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	657
BtgI	CCRYGG	3 cut(s)	48, 164, 646
BtsCI	GGATG	4 cut(s)	65, 671, 973, 991
BtsI	GCAGTG	3 cut(s)	63, 302, 475
BtsIMutI	CAGTG	5 cut(s)	63, 302, 354, 475, 1066
Cac8I	GCNNGC	1 cut(s)	920
CfoI	GCGC	1 cut(s)	783
Cfr10I	RCCGGY	1 cut(s)	1054
Cfr13I	GGNCC	2 cut(s)	222, 656
Csp6I	GTAC	3 cut(s)	553, 752, 939
CviAII	CATG	2 cut(s)	49, 165
CviQI	GTAC	3 cut(s)	553, 752, 939
DdeI	CTNAG	4 cut(s)	435, 678, 1008, 1035
DinI	GGCGCC	1 cut(s)	782
DpnI	GATC	4 cut(s)	257, 393, 440, 839
DpnII	GATC	4 cut(s)	255, 391, 438, 837
Eam1104I	CTCTTC	1 cut(s)	1022
EarI	CTCTTC	1 cut(s)	1022
Eco130I	CCWWGG	3 cut(s)	48, 164, 661
Eco31I	GGTCTC	2 cut(s)	656, 874
Eco47I	GGWCC	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	1021
EcoRI	GAATTC	3 cut(s)	342, 566, 737
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	3 cut(s)	48, 164, 661
EcoT22I	ATGCAT	3 cut(s)	328, 671, 973
EgeI	GGCGCC	1 cut(s)	782
EheI	GGCGCC	1 cut(s)	782
ErhI	CCWWGG	3 cut(s)	48, 164, 661
FaeI	CATG	2 cut(s)	52, 168
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FatI	CATG	2 cut(s)	48, 164
FauI	CCCGC	1 cut(s)	675
FauNDI	CATATG	2 cut(s)	817, 856
FbaI	TGATCA	2 cut(s)	391, 837
Fnu4HI	GCNGC	7 cut(s)	54, 72, 453, 456, 499, 852, 990
FokI	GGATG	4 cut(s)	52, 678, 980, 998
Fsp4HI	GCNGC	7 cut(s)	54, 72, 453, 456, 499, 852, 990
FspBI	CTAG	1 cut(s)	761
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	7 cut(s)	54, 72, 453, 456, 499, 852, 990
HaeII	RGCGCY	1 cut(s)	784
HaeIII	GGCC	1 cut(s)	657
HapII	CCGG	2 cut(s)	946, 1055
HhaI	GCGC	1 cut(s)	783
Hin1I	GRCGYC	1 cut(s)	781
Hin1II	CATG	2 cut(s)	52, 168
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HincII	GTYRAC	2 cut(s)	108, 514
HindII	GTYRAC	2 cut(s)	108, 514
HindIII	AAGCTT	2 cut(s)	248, 461
HinfI	GANTC	2 cut(s)	101, 360
HpaI	GTTAAC	1 cut(s)	108
HpaII	CCGG	2 cut(s)	946, 1055
HphI	GGTGA	6 cut(s)	25, 110, 255, 577, 697, 742
Hpy166II	GTNNAC	6 cut(s)	108, 210, 514, 555, 895, 939
Hpy188I	TCNGA	5 cut(s)	244, 375, 491, 908, 985
Hpy188III	TCNNGA	2 cut(s)	1021, 1023
Hpy8I	GTNNAC	6 cut(s)	108, 210, 514, 555, 895, 939
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	6 cut(s)	213, 541, 684, 990, 1053, 1071
HpyCH4III	ACNGT	1 cut(s)	650
HpyCH4IV	ACGT	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 68, 431, 800, 919, 995, 1004
HpyF3I	CTNAG	4 cut(s)	435, 678, 1008, 1035
HpySE526I	ACGT	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	781
Hsp92II	CATG	2 cut(s)	52, 168
HspAI	GCGC	1 cut(s)	781
KasI	GGCGCC	1 cut(s)	780
Ksp22I	TGATCA	2 cut(s)	391, 837
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	255, 391, 438, 837
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	6 cut(s)	65, 83, 467, 510, 838, 1001
LweI	GCATC	7 cut(s)	83, 289, 335, 656, 776, 958, 976
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	4 cut(s)	82, 98, 261, 285
MalI	GATC	4 cut(s)	257, 393, 440, 839
MboI	GATC	4 cut(s)	255, 391, 438, 837
MboII	GAAGA	3 cut(s)	85, 634, 1009
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	631
Mly113I	GGCGCC	1 cut(s)	781
MlyI	GAGTC	2 cut(s)	95, 354
MnlI	CCTC	8 cut(s)	9, 198, 442, 589, 603, 794, 902, 1044
Mph1103I	ATGCAT	3 cut(s)	328, 671, 973
MroXI	GAANNNNTTC	1 cut(s)	1016
MseI	TTAA	2 cut(s)	107, 581
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	2 cut(s)	946, 1055
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	2 cut(s)	669, 971
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	7 cut(s)	59, 68, 431, 800, 919, 995, 1004
NarI	GGCGCC	1 cut(s)	781
NcoI	CCATGG	2 cut(s)	48, 164
NdeI	CATATG	2 cut(s)	817, 856
NdeII	GATC	4 cut(s)	255, 391, 438, 837
NlaIII	CATG	2 cut(s)	52, 168
NlaIV	GGNNCC	4 cut(s)	257, 658, 782, 1059
NmeAIII	GCCGAG	1 cut(s)	633
NmuCI	GTSAC	4 cut(s)	82, 98, 261, 285
NsiI	ATGCAT	3 cut(s)	328, 671, 973
PaeR7I	CTCGAG	1 cut(s)	1021
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PctI	GAATGC	2 cut(s)	669, 971
PdmI	GAANNNNTTC	1 cut(s)	1016
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	7 cut(s)	55, 73, 454, 457, 500, 853, 991
PleI	GAGTC	2 cut(s)	95, 354
PluTI	GGCGCC	1 cut(s)	784
PpsI	GAGTC	2 cut(s)	95, 354
PshAI	GACNNNNGTC	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	4 cut(s)	257, 658, 782, 1059
PspPI	GGNCC	2 cut(s)	222, 656
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	3 cut(s)	554, 753, 940
RsaNI	GTAC	3 cut(s)	553, 752, 939
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	107, 581
SatI	GCNGC	7 cut(s)	54, 72, 453, 456, 499, 852, 990
Sau3AI	GATC	4 cut(s)	255, 391, 438, 837
Sau96I	GGNCC	2 cut(s)	222, 656
SchI	GAGTC	2 cut(s)	95, 354
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	7 cut(s)	83, 289, 335, 656, 776, 958, 976
SfcI	CTRYAG	1 cut(s)	134
SfoI	GGCGCC	1 cut(s)	782
Sfr274I	CTCGAG	1 cut(s)	1021
SinI	GGWCC	1 cut(s)	222
SlaI	CTCGAG	1 cut(s)	1021
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	1021
SmoI	CTYRAG	1 cut(s)	1021
SsiI	CCGC	4 cut(s)	69, 266, 452, 682
SspDI	GGCGCC	1 cut(s)	780
SspMI	CTAG	1 cut(s)	761
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	3 cut(s)	48, 164, 661
TaaI	ACNGT	1 cut(s)	650
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	3 cut(s)	631, 831, 1022
TatI	WGTACW	3 cut(s)	552, 751, 938
TauI	GCSGC	1 cut(s)	455
Tru1I	TTAA	2 cut(s)	107, 581
Tru9I	TTAA	2 cut(s)	107, 581
TscAI	CASTG	4 cut(s)	63, 309, 361, 475
TseFI	GTSAC	4 cut(s)	82, 98, 261, 285
TseI	GCWGC	6 cut(s)	53, 71, 455, 498, 851, 989
Tsp45I	GTSAC	4 cut(s)	82, 98, 261, 285
TspDTI	ATGAA	2 cut(s)	54, 475
TspRI	CASTG	4 cut(s)	63, 309, 361, 475
Van91I	CCANNNNNTGG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	222
VspI	ATTAAT	1 cut(s)	581
XapI	RAATTY	4 cut(s)	342, 403, 566, 737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	1021
XmnI	GAANNNNTTC	1 cut(s)	1016
XspI	CTAG	1 cut(s)	761
Zsp2I	ATGCAT	3 cut(s)	328, 671, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.