Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Forward (+)

15045114 .. 15048012

Gene Structure 2899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCTTCGCATAGTGATGAAATCGAAGAAGAACAAATATCAAGAATTGAGAAAGGCAAAGGCAAAGATTGCCAAGGAGGAATCGAGACGGTTATATGTACTTCTCCCAGCATTGTCTGCCTTACCCAAAAGTTGATAGCAGAGATGATTGGGACCTATTTTATAGTATTCTCTGGATGTGGAGTGGTGGTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGGATCTGTGTTACTTGGGGTCTCATTGTTATGGTCATGATTTACTCTACTGGTCACATTTCCGGTGCACATTTTAACCCTGCCGTTACCGTTACTTTCGCCATTTTCCGACGGTTTCCTTGGCATCAGGTACCATTGTATATAGGTGCACAATTTGCGGGATCGTTACTAGCGAGTTTGACATTGAGACTAATGTTTAAAGTGACACCCGAAGCTTTCTTTGGAACGACTCCAGCTGATTCGCCAGCACGAGCGCTCGTCGCAGAAATCATTATCTCATTCCTCCTCATGTTCGTTATCTCTGGAGTTGCCACCGATAATCGTGCGGTTGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATGGTAAACGTCTTTGTGGCCGGACCAATTTCGGGAGCATCAATGAATCCAGCAAGAAGTCTAGGACCAGCATTAGTGATGGGAGTATATAAACACATATGGGTTTACATTGTTGGTCCCGTCCTAGGAGTTATATCCGGAGGTTTTGTTTACAACCTTATCAGATTTACGGATAAGCCACTCCGAGAACTCACTAAGAGCGCTTCTTTTCTCCGTGCCGTTTCTCCAAGCCACAAGGGTTCTAGTTCTAAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

283

Amino Acids

30.22

Weight (kDa)

8.82

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	41 - 249	3e-56	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	358
AccIII	TCCGGA	1 cut(s)	731
AciI	CCGC	3 cut(s)	386, 554, 578
AclWI	GGATC	2 cut(s)	239, 397
AcoI	YGGCCR	1 cut(s)	612
AfaI	GTAC	3 cut(s)	100, 206, 360
AfeI	AGCGCT	2 cut(s)	483, 796
AfiI	CCNNNNNNNGG	2 cut(s)	626, 719
AjnI	CCWGG	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AluBI	AGCT	3 cut(s)	443, 464, 569
AluI	AGCT	3 cut(s)	443, 464, 569
Alw21I	GWGCWC	2 cut(s)	298, 379
Alw26I	GTCTC	3 cut(s)	80, 254, 409
Alw44I	GTGCAC	2 cut(s)	294, 375
AlwI	GGATC	2 cut(s)	239, 397
Aor13HI	TCCGGA	1 cut(s)	731
Aor51HI	AGCGCT	2 cut(s)	483, 796
AoxI	GGCC	1 cut(s)	612
ApaLI	GTGCAC	2 cut(s)	294, 375
Asp718I	GGTACC	1 cut(s)	358
AspA2I	CCTAGG	1 cut(s)	718
AspLEI	GCGC	2 cut(s)	484, 797
AspS9I	GGNCC	4 cut(s)	153, 617, 659, 710
AvaII	GGWCC	4 cut(s)	153, 617, 659, 710
AvrII	CCTAGG	1 cut(s)	718
BaeGI	GKGCMC	2 cut(s)	298, 379
BaeI	ACNNNNGTAYC	2 cut(s)	350, 383
BanI	GGYRCC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	477
Bbv12I	GWGCWC	2 cut(s)	298, 379
BccI	CCATC	1 cut(s)	667
BceAI	ACGGC	2 cut(s)	296, 797
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	3 cut(s)	80, 254, 409
BfaI	CTAG	4 cut(s)	398, 656, 719, 837
BfoI	RGCGCY	2 cut(s)	485, 798
BlnI	CCTAGG	1 cut(s)	718
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	4 cut(s)	153, 617, 659, 710
BmgT120I	GGNCC	4 cut(s)	153, 617, 659, 710
BmiI	GGNNCC	3 cut(s)	154, 360, 712
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	361, 641
BpmI	CTGGAG	2 cut(s)	444, 552
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	4 cut(s)	73, 227, 347, 718
BsaWI	WCCGGW	2 cut(s)	290, 731
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 204, 726, 756
Bsc4I	CCNNNNNNNGG	2 cut(s)	626, 719
Bse1I	ACTGG	1 cut(s)	283
BseAI	TCCGGA	1 cut(s)	731
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	4 cut(s)	73, 227, 347, 718
BseGI	GGATG	2 cut(s)	182, 591
BseLI	CCNNNNNNNGG	2 cut(s)	626, 719
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	2 cut(s)	298, 379
BseYI	CCCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	614
BshNI	GGYRCC	1 cut(s)	358
BsiHKAI	GWGCWC	2 cut(s)	298, 379
BsiSI	CCGG	3 cut(s)	291, 615, 732
BslFI	GGGAC	2 cut(s)	166, 696
BslI	CCNNNNNNNGG	2 cut(s)	626, 719
BsmAI	GTCTC	3 cut(s)	80, 254, 409
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	2 cut(s)	166, 696
BsnI	GGCC	1 cut(s)	614
Bso31I	GGTCTC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	298, 379
Bsp13I	TCCGGA	1 cut(s)	731
Bsp143I	GATC	2 cut(s)	231, 389
BspACI	CCGC	3 cut(s)	386, 554, 578
BspANI	GGCC	1 cut(s)	614
BspEI	TCCGGA	1 cut(s)	731
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	3 cut(s)	154, 360, 712
BspPI	GGATC	2 cut(s)	239, 397
BspT107I	GGYRCC	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	4 cut(s)	73, 227, 347, 718
BssMI	GATC	2 cut(s)	231, 389
BssSI	CACGAG	1 cut(s)	477
BssT1I	CCWWGG	3 cut(s)	73, 347, 718
Bst2BI	CACGAG	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	91, 319, 342
BstAPI	GCANNNNNTGC	3 cut(s)	69, 117, 383
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	789, 843
BstF5I	GGATG	2 cut(s)	182, 591
BstH2I	RGCGCY	2 cut(s)	485, 798
BstHHI	GCGC	2 cut(s)	484, 797
BstKTI	GATC	2 cut(s)	234, 392
BstMAI	GTCTC	3 cut(s)	80, 254, 409
BstMBI	GATC	2 cut(s)	231, 389
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 117, 383, 488, 575
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstSLI	GKGCMC	2 cut(s)	298, 379
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	614
BtsCI	GGATG	2 cut(s)	182, 591
Cac8I	GCNNGC	1 cut(s)	474
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	2 cut(s)	484, 797
Cfr13I	GGNCC	4 cut(s)	153, 617, 659, 710
Csp6I	GTAC	3 cut(s)	99, 205, 359
CviAII	CATG	2 cut(s)	265, 517
CviJI	RGCY	6 cut(s)	443, 464, 569, 614, 772, 825
CviKI_1	RGCY	6 cut(s)	443, 464, 569, 614, 772, 825
CviQI	GTAC	3 cut(s)	99, 205, 359
DdeI	CTNAG	2 cut(s)	789, 843
DpnI	GATC	2 cut(s)	233, 391
DpnII	GATC	2 cut(s)	231, 389
DraI	TTTAAA	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	612
Eco130I	CCWWGG	3 cut(s)	73, 347, 718
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	4 cut(s)	153, 617, 659, 710
Eco47III	AGCGCT	2 cut(s)	483, 796
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	3 cut(s)	73, 347, 718
ErhI	CCWWGG	3 cut(s)	73, 347, 718
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	2 cut(s)	268, 520
FaqI	GGGAC	2 cut(s)	166, 696
FatI	CATG	2 cut(s)	264, 516
FauI	CCCGC	1 cut(s)	379
FauNDI	CATATG	1 cut(s)	692
FokI	GGATG	2 cut(s)	189, 598
FspBI	CTAG	4 cut(s)	398, 656, 719, 837
GlaI	GCGC	2 cut(s)	483, 796
GsaI	CCCAGC	1 cut(s)	111
GsuI	CTGGAG	2 cut(s)	444, 552
HaeII	RGCGCY	2 cut(s)	485, 798
HaeIII	GGCC	1 cut(s)	614
HapII	CCGG	3 cut(s)	291, 615, 732
HhaI	GCGC	2 cut(s)	484, 797
Hin1II	CATG	2 cut(s)	268, 520
Hin6I	GCGC	2 cut(s)	482, 795
HinP1I	GCGC	2 cut(s)	482, 795
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	4 cut(s)	81, 457, 467, 640
HpaII	CCGG	3 cut(s)	291, 615, 732
Hpy166II	GTNNAC	5 cut(s)	296, 377, 601, 700, 745
Hpy188I	TCNGA	3 cut(s)	338, 758, 779
Hpy188III	TCNNGA	7 cut(s)	42, 85, 174, 265, 531, 627, 732
Hpy8I	GTNNAC	5 cut(s)	296, 377, 601, 700, 745
Hpy99I	CGWCG	2 cut(s)	342, 491
HpyCH4III	ACNGT	3 cut(s)	91, 319, 342
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	2 cut(s)	296, 377
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 117, 383, 488, 575
HpyF3I	CTNAG	2 cut(s)	789, 843
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	2 cut(s)	268, 520
HspAI	GCGC	2 cut(s)	482, 795
Kpn2I	TCCGGA	1 cut(s)	731
KpnI	GGTACC	1 cut(s)	362
Kzo9I	GATC	2 cut(s)	231, 389
LmnI	GCTCC	1 cut(s)	629
LweI	GCATC	2 cut(s)	361, 641
MaeI	CTAG	4 cut(s)	398, 656, 719, 837
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	6 cut(s)	238, 281, 313, 319, 393, 430
MalI	GATC	2 cut(s)	233, 391
MboI	GATC	2 cut(s)	231, 389
MboII	GAAGA	2 cut(s)	38, 41
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	298, 379
MluCI	AATT	5 cut(s)	45, 380, 563, 573, 621
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	2 cut(s)	361, 538
MnlI	CCTC	5 cut(s)	71, 203, 521, 524, 728
MroI	TCCGGA	1 cut(s)	731
MseI	TTAA	3 cut(s)	303, 426, 850
MslI	CAYNNNNRTG	2 cut(s)	15, 257
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	3 cut(s)	291, 615, 732
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	5 cut(s)	69, 117, 383, 488, 575
NdeI	CATATG	1 cut(s)	692
NdeII	GATC	2 cut(s)	231, 389
NlaIII	CATG	2 cut(s)	268, 520
NlaIV	GGNNCC	3 cut(s)	154, 360, 712
NmuCI	GTSAC	2 cut(s)	281, 430
PagI	TCATGA	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PfeI	GAWTC	3 cut(s)	81, 467, 640
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	154, 360, 712
PspPI	GGNCC	4 cut(s)	153, 617, 659, 710
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	231
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	3 cut(s)	100, 206, 360
RsaNI	GTAC	3 cut(s)	99, 205, 359
RseI	CAYNNNNRTG	2 cut(s)	15, 257
SaqAI	TTAA	3 cut(s)	303, 426, 850
Sau3AI	GATC	2 cut(s)	231, 389
Sau96I	GGNCC	4 cut(s)	153, 617, 659, 710
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	2 cut(s)	298, 379
SetI	ASST	9 cut(s)	158, 360, 376, 445, 466, 571, 606, 739, 753
SfaNI	GCATC	2 cut(s)	361, 641
SinI	GGWCC	4 cut(s)	153, 617, 659, 710
SmiMI	CAYNNNNRTG	2 cut(s)	15, 257
Sse9I	AATT	5 cut(s)	45, 380, 563, 573, 621
SsiI	CCGC	3 cut(s)	386, 554, 578
SspMI	CTAG	4 cut(s)	398, 656, 719, 837
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	3 cut(s)	73, 347, 718
TaaI	ACNGT	3 cut(s)	91, 319, 342
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	2 cut(s)	24, 84
TasI	AATT	5 cut(s)	45, 380, 563, 573, 621
TatI	WGTACW	1 cut(s)	98
TfiI	GAWTC	3 cut(s)	81, 467, 640
Tru1I	TTAA	3 cut(s)	303, 426, 850
Tru9I	TTAA	3 cut(s)	303, 426, 850
TseFI	GTSAC	2 cut(s)	281, 430
Tsp45I	GTSAC	2 cut(s)	281, 430
TspDTI	ATGAA	2 cut(s)	33, 653
TspGWI	ACGGA	3 cut(s)	222, 779, 797
VneI	GTGCAC	2 cut(s)	294, 375
VpaK11BI	GGWCC	4 cut(s)	153, 617, 659, 710
XmaJI	CCTAGG	1 cut(s)	718
XspI	CTAG	4 cut(s)	398, 656, 719, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.