Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Reverse (-)

31076297 .. 31077980

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCTGATCCACATGTTCTCACATCACTGGAAGACGGTACCGGCAACTCGGCTCCGACTAAGGACAGATTTTCTGGGCTTTGTACATCTGCTGAGATTGTTCACCTTCTCCAAAAGCTAATTGCGGAGGTGATCGGAACATATTTCTTGATATTTGCCGGGTGTGGTTCGGTTGTGGTGAACAAGATATATGGTTCGATAACGTTTCCAGGGGTGGCTGTCGTCTGGGGCGTAATCGCTATGGTCATGATCTATTCCGTCGGTCATATCTCCGGTGCCCATTTTAATCCCGCCGTCACCATCACTTTTGCCGTCTTTCGCCATTTTCCTCTAAAACAGGTACCTTTGTACATTGTGGCGCAGCTTATAGGCTCCTTACTTGCGAGTGGGACGTTATGCCTTGTTTTCACTGTACATACGGATGAGTTCTTTGGAACCGTACCGGTTGGATCCTATCGTCAATCTTTGGTCATTGAGATCATTGCCTCATTTCTCTTGATGTTCGTCATTTCCGGCGTCGCCACCGATAACAGAGCTATTGGAGAATTGGCAGGAATTGCTATAGGCATGACCATTTTAGTCGATGTCTTCGTTTGCGGGCCGGTATCAGGGGCGTCAATGAACCCAGCTCGGAGCATTGGGCCGGCAGTGATCATGAAGATCTACAAAGGACTTTGGATTTATATTGTAGGCCCAATAATTGGGACGATGTTGGGTGGATTGGCATACAATTTGATAAGATTCACCGATAAACCACTCCGGGAAATAACAAAGAGCGCTTCCATGTCTATCAGGAGCGTTCCGGTCCTCAAGTCCGTGTCTCGAAACACCACTTTTAACAGTAGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

284

Amino Acids

30.21

Weight (kDa)

9.08

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	34 - 243	1.1e-59	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	38, 340
AccB1I	GGYRCC	3 cut(s)	38, 275, 340
AccB7I	CCANNNNNTGG	1 cut(s)	701
AciI	CCGC	3 cut(s)	125, 291, 597
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	3 cut(s)	2, 444, 457
AcyI	GRCGYC	2 cut(s)	516, 614
AfaI	GTAC	6 cut(s)	40, 85, 342, 350, 414, 441
AfeI	AGCGCT	1 cut(s)	778
AfiI	CCNNNNNNNGG	2 cut(s)	608, 701
AflIII	ACRYGT	1 cut(s)	13
AgeI	ACCGGT	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	4 cut(s)	118, 364, 536, 629
AluI	AGCT	4 cut(s)	118, 364, 536, 629
Alw26I	GTCTC	1 cut(s)	825
AlwI	GGATC	3 cut(s)	2, 444, 457
Aor51HI	AGCGCT	1 cut(s)	778
AoxI	GGCC	3 cut(s)	599, 641, 691
ApeKI	GCWGC	1 cut(s)	361
AsiGI	ACCGGT	1 cut(s)	442
Asp718I	GGTACC	2 cut(s)	38, 340
AspLEI	GCGC	2 cut(s)	361, 779
AspS9I	GGNCC	4 cut(s)	599, 641, 692, 805
AsuC2I	CCSGG	2 cut(s)	160, 761
AsuHPI	GGTGA	5 cut(s)	95, 142, 190, 289, 736
AvaII	GGWCC	1 cut(s)	805
BaeGI	GKGCMC	1 cut(s)	280
BaeI	ACNNNNGTAYC	2 cut(s)	332, 365
BamHI	GGATCC	1 cut(s)	449
BanI	GGYRCC	3 cut(s)	38, 275, 340
BbsI	GAAGAC	2 cut(s)	39, 580
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	2 cut(s)	278, 296
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	1 cut(s)	651
BcnI	CCSGG	2 cut(s)	160, 761
BcoDI	GTCTC	1 cut(s)	825
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	780
BglII	AGATCT	1 cut(s)	660
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	3 cut(s)	160, 210, 761
Bme18I	GGWCC	1 cut(s)	805
BmgT120I	GGNCC	4 cut(s)	599, 641, 692, 805
BmiI	GGNNCC	7 cut(s)	40, 54, 277, 342, 373, 436, 451
BmrFI	CCNGG	3 cut(s)	160, 210, 761
BpiI	GAAGAC	2 cut(s)	39, 580
BpuEI	CTTGAG	1 cut(s)	794
BpuMI	CCSGG	2 cut(s)	160, 761
BsaHI	GRCGYC	2 cut(s)	516, 614
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	3 cut(s)	272, 442, 802
Bsc4I	CCNNNNNNNGG	2 cut(s)	608, 701
Bse118I	RCCGGY	4 cut(s)	41, 442, 601, 643
Bse1I	ACTGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	2 cut(s)	608, 701
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	625
BshFI	GGCC	3 cut(s)	601, 643, 693
BshNI	GGYRCC	3 cut(s)	38, 275, 340
BshTI	ACCGGT	1 cut(s)	442
BsiSI	CCGG	9 cut(s)	42, 159, 273, 443, 513, 602, 644, 760, 803
BslFI	GGGAC	2 cut(s)	403, 718
BslI	CCNNNNNNNGG	2 cut(s)	608, 701
BsmAI	GTCTC	1 cut(s)	825
BsmFI	GGGAC	2 cut(s)	403, 718
BsnI	GGCC	3 cut(s)	601, 643, 693
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp1407I	TGTACA	3 cut(s)	83, 348, 412
Bsp143I	GATC	7 cut(s)	7, 132, 249, 449, 477, 651, 660
BspACI	CCGC	3 cut(s)	125, 291, 597
BspANI	GGCC	3 cut(s)	601, 643, 693
BspCNI	CTCAG	1 cut(s)	85
BspHI	TCATGA	2 cut(s)	246, 654
BspLI	GGNNCC	7 cut(s)	40, 54, 277, 342, 373, 436, 451
BspPI	GGATC	3 cut(s)	2, 444, 457
BspT107I	GGYRCC	3 cut(s)	38, 275, 340
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	4 cut(s)	41, 442, 601, 643
BsrGI	TGTACA	3 cut(s)	83, 348, 412
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	4 cut(s)	41, 442, 601, 643
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	7 cut(s)	7, 132, 249, 449, 477, 651, 660
BssNI	GRCGYC	2 cut(s)	516, 614
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	4 cut(s)	38, 412, 439, 842
BstACI	GRCGYC	2 cut(s)	516, 614
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstAUI	TGTACA	3 cut(s)	83, 348, 412
BstC8I	GCNNGC	2 cut(s)	599, 645
BstDEI	CTNAG	2 cut(s)	60, 93
BstF5I	GGATG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	780
BstHHI	GCGC	2 cut(s)	361, 779
BstKTI	GATC	7 cut(s)	10, 135, 252, 452, 480, 654, 663
BstMAI	GTCTC	1 cut(s)	825
BstMBI	GATC	7 cut(s)	7, 132, 249, 449, 477, 651, 660
BstMWI	GCNNNNNNNGC	1 cut(s)	557
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	3 cut(s)	158, 208, 759
BstSFI	CTRYAG	1 cut(s)	561
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	2 cut(s)	39, 580
BstX2I	RGATCY	2 cut(s)	449, 660
BstYI	RGATCY	2 cut(s)	449, 660
BsuRI	GGCC	3 cut(s)	601, 643, 693
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	3 cut(s)	26, 408, 654
Cac8I	GCNNGC	2 cut(s)	599, 645
CciI	TCATGA	2 cut(s)	246, 654
CfoI	GCGC	2 cut(s)	361, 779
Cfr10I	RCCGGY	4 cut(s)	41, 442, 601, 643
Cfr13I	GGNCC	4 cut(s)	599, 641, 692, 805
CseI	GACGC	2 cut(s)	505, 603
Csp6I	GTAC	6 cut(s)	39, 84, 341, 349, 413, 440
CspAI	ACCGGT	1 cut(s)	442
CviAII	CATG	5 cut(s)	14, 247, 568, 655, 784
CviQI	GTAC	6 cut(s)	39, 84, 341, 349, 413, 440
DdeI	CTNAG	2 cut(s)	60, 93
DpnI	GATC	7 cut(s)	9, 134, 251, 451, 479, 653, 662
DpnII	GATC	7 cut(s)	7, 132, 249, 449, 477, 651, 660
Eco47I	GGWCC	1 cut(s)	805
Eco47III	AGCGCT	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	208
FaeI	CATG	5 cut(s)	17, 250, 571, 658, 787
FaqI	GGGAC	2 cut(s)	403, 718
FatI	CATG	5 cut(s)	13, 246, 567, 654, 783
FauI	CCCGC	2 cut(s)	298, 590
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	362
GlaI	GCGC	2 cut(s)	360, 778
GluI	GCNGC	1 cut(s)	362
GsaI	CCCAGC	1 cut(s)	629
HaeII	RGCGCY	1 cut(s)	780
HaeIII	GGCC	3 cut(s)	601, 643, 693
HapII	CCGG	9 cut(s)	42, 159, 273, 443, 513, 602, 644, 760, 803
HgaI	GACGC	2 cut(s)	505, 603
HhaI	GCGC	2 cut(s)	361, 779
Hin1I	GRCGYC	2 cut(s)	516, 614
Hin1II	CATG	5 cut(s)	17, 250, 571, 658, 787
Hin6I	GCGC	2 cut(s)	359, 777
HinP1I	GCGC	2 cut(s)	359, 777
HinfI	GANTC	1 cut(s)	741
HpaII	CCGG	9 cut(s)	42, 159, 273, 443, 513, 602, 644, 760, 803
HphI	GGTGA	5 cut(s)	95, 142, 190, 289, 736
Hpy166II	GTNNAC	2 cut(s)	103, 181
Hpy188I	TCNGA	4 cut(s)	7, 57, 137, 633
Hpy188III	TCNNGA	6 cut(s)	148, 247, 496, 655, 793, 822
Hpy8I	GTNNAC	2 cut(s)	103, 181
Hpy99I	CGWCG	2 cut(s)	263, 521
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	4 cut(s)	38, 412, 439, 842
HpyCH4IV	ACGT	2 cut(s)	203, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	557
HpyF3I	CTNAG	2 cut(s)	60, 93
HpySE526I	ACGT	2 cut(s)	203, 392
Hsp92I	GRCGYC	2 cut(s)	516, 614
Hsp92II	CATG	5 cut(s)	17, 250, 571, 658, 787
HspAI	GCGC	2 cut(s)	359, 777
KpnI	GGTACC	2 cut(s)	42, 344
KroI	GCCGGC	1 cut(s)	643
KroNI	GCCGGC	1 cut(s)	645
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	7 cut(s)	7, 132, 249, 449, 477, 651, 660
LmnI	GCTCC	4 cut(s)	58, 377, 633, 795
Lsp1109I	GCAGC	1 cut(s)	373
MaeII	ACGT	2 cut(s)	203, 392
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	7 cut(s)	9, 134, 251, 451, 479, 653, 662
MboI	GATC	7 cut(s)	7, 132, 249, 449, 477, 651, 660
MboII	GAAGA	3 cut(s)	44, 580, 670
MflI	RGATCY	2 cut(s)	449, 660
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	5 cut(s)	120, 545, 555, 699, 730
MmeI	TCCRAC	2 cut(s)	80, 427
MnlI	CCTC	4 cut(s)	121, 339, 496, 818
MroNI	GCCGGC	1 cut(s)	643
MseI	TTAA	2 cut(s)	285, 837
MslI	CAYNNNNRTG	1 cut(s)	420
MspI	CCGG	9 cut(s)	42, 159, 273, 443, 513, 602, 644, 760, 803
MspR9I	CCNGG	3 cut(s)	160, 210, 761
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	557
NaeI	GCCGGC	1 cut(s)	645
NciI	CCSGG	2 cut(s)	160, 761
NdeII	GATC	7 cut(s)	7, 132, 249, 449, 477, 651, 660
NgoMIV	GCCGGC	1 cut(s)	643
NlaIII	CATG	5 cut(s)	17, 250, 571, 658, 787
NlaIV	GGNNCC	7 cut(s)	40, 54, 277, 342, 373, 436, 451
NmeAIII	GCCGAG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	17
PagI	TCATGA	2 cut(s)	246, 654
PciI	ACATGT	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 588
PdiI	GCCGGC	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	741
PflMI	CCANNNNNTGG	1 cut(s)	701
PfoI	TCCNGGA	1 cut(s)	759
PinAI	ACCGGT	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	363
PscI	ACATGT	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	7 cut(s)	40, 54, 277, 342, 373, 436, 451
PspPI	GGNCC	4 cut(s)	599, 641, 692, 805
PsuI	RGATCY	2 cut(s)	449, 660
RsaI	GTAC	6 cut(s)	40, 85, 342, 350, 414, 441
RsaNI	GTAC	6 cut(s)	39, 84, 341, 349, 413, 440
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	285, 837
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	7 cut(s)	7, 132, 249, 449, 477, 651, 660
Sau96I	GGNCC	4 cut(s)	599, 641, 692, 805
ScrFI	CCNGG	3 cut(s)	160, 210, 761
SduI	GDGCHC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	1 cut(s)	805
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
Sse9I	AATT	5 cut(s)	120, 545, 555, 699, 730
SsiI	CCGC	3 cut(s)	125, 291, 597
StyD4I	CCNGG	3 cut(s)	158, 208, 759
TaaI	ACNGT	4 cut(s)	38, 412, 439, 842
TaiI	ACGT	2 cut(s)	206, 395
TaqI	TCGA	3 cut(s)	197, 582, 823
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	5 cut(s)	120, 545, 555, 699, 730
TatI	WGTACW	3 cut(s)	83, 348, 412
TfiI	GAWTC	1 cut(s)	741
Tru1I	TTAA	2 cut(s)	285, 837
Tru9I	TTAA	2 cut(s)	285, 837
TscAI	CASTG	3 cut(s)	33, 415, 654
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	635, 671
TspGWI	ACGGA	3 cut(s)	247, 434, 805
TspRI	CASTG	3 cut(s)	33, 415, 654
Van91I	CCANNNNNTGG	1 cut(s)	701
VpaK11BI	GGWCC	1 cut(s)	805
XceI	RCATGY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.