Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Forward (+)

27414934 .. 27416545

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTAACTCACCTTCTATTCCATCCCCTACCCTTGGAGTGTCATCTAAACTATCTACTGTAGAAGAAGCTGATGCAAATAGGATCCAGGCTGAAGTTCCTCCAACAATCTTCCAAAAGATGGTGGCAGAGCTGGTGGGAACTTACGTTCTTGTATTTATGGGGTGTGGGGCTGCTCTTGTCAACAAAACACATCCTCTTACGACTGTGGGTATAGCAATCGTATGGGGTCTTGTTCTTATGGCGCTTACTTATACAGTTGGTCATGTCTCTGGTTGCCATTTGAATCCTGCTGTTACTATTGCCTTAGCTGCTGCTCGTAAATTTCCATCCAAACATGTACCTATGTATGCATTGTCACAGATGATGGGTGCAATACTAGCAAGCCTGACCCTGCGGCTGTTATTTCAAGACAATATTGACTTAATGGTGACTCAGTACTCTGATTCAACAACTCATCTACAAGCCCTCGTCTGGGAATTCATAGCCACCTTTATACTGATGTTCACCATTTGTGGTGTTGCCACTGATCACAGAGCGAGCAAGAAGTTAGCTGGAGTTGCTATAGGTGTTACAGTTCTGTTCAATGCCATGGTTGCTGGGCCAATCACTGGAGCTTCCATGAATCCTGCAAGGAGTTTTGGCCCTGCTGCTGTTACTGGTATTTATAAGAATCTGTGGGTCTATCTTATAGCTCCTATTCTCGGGGCGCTTGCTGCTACTGCACTGTATAGTGTTCTCCGGGTACCTGAACCCGTGAAAGCTGATCCAAAAGACAAATCACTTCCACCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012506 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

266

Amino Acids

28.02

Weight (kDa)

8.98

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	37 - 244	3.2e-61	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
Acc65I	GGTACC	1 cut(s)	745
AccB1I	GGYRCC	1 cut(s)	745
AccB7I	CCANNNNNTGG	2 cut(s)	121, 611
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	3 cut(s)	79, 92, 761
AcsI	RAATTY	2 cut(s)	323, 479
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	3 cut(s)	342, 440, 747
AfiI	CCNNNNNNNGG	6 cut(s)	35, 121, 474, 475, 611, 704
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	4 cut(s)	286, 410, 450, 586
AjnI	CCWGG	1 cut(s)	87
AloI	GAACNNNNNNTCC	2 cut(s)	132, 164
AluBI	AGCT	7 cut(s)	71, 133, 311, 554, 617, 695, 764
AluI	AGCT	7 cut(s)	71, 133, 311, 554, 617, 695, 764
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	3 cut(s)	79, 92, 761
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	2 cut(s)	602, 643
ApeKI	GCWGC	5 cut(s)	173, 311, 314, 650, 716
ApoI	RAATTY	2 cut(s)	323, 479
Asp718I	GGTACC	1 cut(s)	745
AspLEI	GCGC	2 cut(s)	247, 712
AspS9I	GGNCC	2 cut(s)	602, 644
AsuC2I	CCSGG	1 cut(s)	743
AsuHPI	GGTGA	3 cut(s)	3, 442, 499
AvaI	CYCGRG	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	745
BbvI	GCAGC	5 cut(s)	160, 298, 301, 637, 703
BccI	CCATC	4 cut(s)	31, 115, 337, 361
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	743
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	2 cut(s)	60, 564
BfoI	RGCGCY	2 cut(s)	248, 713
BisI	GCNGC	6 cut(s)	174, 312, 315, 398, 651, 717
BlsI	GCNGC	6 cut(s)	175, 313, 316, 399, 652, 718
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	2 cut(s)	89, 743
BmeT110I	CYCGRG	1 cut(s)	704
BmgT120I	GGNCC	2 cut(s)	602, 644
BmiI	GGNNCC	2 cut(s)	86, 747
BmrFI	CCNGG	2 cut(s)	89, 743
BmsI	GCATC	1 cut(s)	64
BpmI	CTGGAG	2 cut(s)	576, 633
Bpu10I	CCTNAGC	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	743
BsaJI	CCNNGG	2 cut(s)	34, 591
Bsc4I	CCNNNNNNNGG	6 cut(s)	35, 121, 474, 475, 611, 704
Bse1I	ACTGG	3 cut(s)	616, 664, 791
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	34, 591
BseGI	GGATG	3 cut(s)	23, 193, 329
BseLI	CCNNNNNNNGG	6 cut(s)	35, 121, 474, 475, 611, 704
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	3 cut(s)	616, 664, 791
BseXI	GCAGC	5 cut(s)	160, 298, 301, 637, 703
BseYI	CCCAGC	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	604, 645
BshNI	GGYRCC	1 cut(s)	745
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	1 cut(s)	742
BslI	CCNNNNNNNGG	6 cut(s)	35, 121, 474, 475, 611, 704
BsmAI	GTCTC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	604, 645
BsoBI	CYCGRG	1 cut(s)	704
Bsp143I	GATC	3 cut(s)	84, 529, 766
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	2 cut(s)	604, 645
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	86, 747
BspPI	GGATC	3 cut(s)	79, 92, 761
BspT107I	GGYRCC	1 cut(s)	745
BsrI	ACTGG	3 cut(s)	616, 664, 791
BssECI	CCNNGG	2 cut(s)	34, 591
BssMI	GATC	3 cut(s)	84, 529, 766
BssT1I	CCWWGG	2 cut(s)	34, 591
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	5 cut(s)	61, 208, 259, 577, 729
BstC8I	GCNNGC	3 cut(s)	385, 541, 714
BstDEI	CTNAG	2 cut(s)	307, 435
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	3 cut(s)	23, 193, 329
BstH2I	RGCGCY	2 cut(s)	248, 713
BstHHI	GCGC	2 cut(s)	247, 712
BstKTI	GATC	3 cut(s)	87, 532, 769
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	3 cut(s)	84, 529, 766
BstMWI	GCNNNNNNNGC	6 cut(s)	311, 380, 560, 596, 716, 722
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	2 cut(s)	87, 741
BstSFI	CTRYAG	2 cut(s)	60, 564
BstV1I	GCAGC	5 cut(s)	160, 298, 301, 637, 703
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	604, 645
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	23, 193, 329
BtsIMutI	CAGTG	3 cut(s)	525, 609, 725
Cac8I	GCNNGC	3 cut(s)	385, 541, 714
CfoI	GCGC	2 cut(s)	247, 712
Cfr13I	GGNCC	2 cut(s)	602, 644
Csp6I	GTAC	3 cut(s)	341, 439, 746
CviAII	CATG	4 cut(s)	266, 338, 592, 622
CviQI	GTAC	3 cut(s)	341, 439, 746
DdeI	CTNAG	2 cut(s)	307, 435
DpnI	GATC	3 cut(s)	86, 531, 768
DpnII	GATC	3 cut(s)	84, 529, 766
Eco130I	CCWWGG	2 cut(s)	34, 591
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	704
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	34, 591
EcoT22I	ATGCAT	1 cut(s)	355
ErhI	CCWWGG	2 cut(s)	34, 591
FaeI	CATG	4 cut(s)	269, 341, 595, 625
FatI	CATG	4 cut(s)	265, 337, 591, 621
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	6 cut(s)	174, 312, 315, 398, 651, 717
FokI	GGATG	3 cut(s)	10, 180, 316
Fsp4HI	GCNGC	6 cut(s)	174, 312, 315, 398, 651, 717
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	2 cut(s)	246, 711
GluI	GCNGC	6 cut(s)	174, 312, 315, 398, 651, 717
GsaI	CCCAGC	1 cut(s)	603
GsuI	CTGGAG	2 cut(s)	576, 633
HaeII	RGCGCY	2 cut(s)	248, 713
HaeIII	GGCC	2 cut(s)	604, 645
HapII	CCGG	1 cut(s)	742
HhaI	GCGC	2 cut(s)	247, 712
Hin1II	CATG	4 cut(s)	269, 341, 595, 625
Hin6I	GCGC	2 cut(s)	245, 710
HinP1I	GCGC	2 cut(s)	245, 710
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	5 cut(s)	286, 433, 446, 625, 673
HpaII	CCGG	1 cut(s)	742
HphI	GGTGA	3 cut(s)	3, 442, 499
Hpy166II	GTNNAC	2 cut(s)	184, 507
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	2 cut(s)	184, 507
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	5 cut(s)	61, 208, 259, 577, 729
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	5 cut(s)	77, 353, 374, 632, 725
HpyF10VI	GCNNNNNNNGC	6 cut(s)	311, 380, 560, 596, 716, 722
HpyF3I	CTNAG	2 cut(s)	307, 435
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	269, 341, 595, 625
HspAI	GCGC	2 cut(s)	245, 710
KpnI	GGTACC	1 cut(s)	749
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	3 cut(s)	84, 529, 766
LmnI	GCTCC	2 cut(s)	614, 700
Lsp1109I	GCAGC	5 cut(s)	160, 298, 301, 637, 703
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	5 cut(s)	295, 357, 430, 571, 655
MalI	GATC	3 cut(s)	86, 531, 768
MboI	GATC	3 cut(s)	84, 529, 766
MboII	GAAGA	2 cut(s)	77, 103
MflI	RGATCY	1 cut(s)	84
MluCI	AATT	2 cut(s)	323, 479
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	3 cut(s)	111, 207, 479
Mph1103I	ATGCAT	1 cut(s)	355
MseI	TTAA	1 cut(s)	425
MslI	CAYNNNNRTG	1 cut(s)	793
MspI	CCGG	1 cut(s)	742
MspR9I	CCNGG	2 cut(s)	89, 743
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	6 cut(s)	311, 380, 560, 596, 716, 722
NciI	CCSGG	1 cut(s)	743
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	3 cut(s)	84, 529, 766
NlaIII	CATG	4 cut(s)	269, 341, 595, 625
NlaIV	GGNNCC	2 cut(s)	86, 747
NmuCI	GTSAC	2 cut(s)	357, 430
NsiI	ATGCAT	1 cut(s)	355
NspI	RCATGY	1 cut(s)	341
PciI	ACATGT	1 cut(s)	337
PfeI	GAWTC	4 cut(s)	286, 446, 625, 673
PflMI	CCANNNNNTGG	2 cut(s)	121, 611
PkrI	GCNGC	6 cut(s)	175, 313, 316, 399, 652, 718
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PscI	ACATGT	1 cut(s)	337
PsiI	TTATAA	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	86, 747
PspPI	GGNCC	2 cut(s)	602, 644
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	3 cut(s)	342, 440, 747
RsaNI	GTAC	3 cut(s)	341, 439, 746
RseI	CAYNNNNRTG	1 cut(s)	793
SaqAI	TTAA	1 cut(s)	425
SatI	GCNGC	6 cut(s)	174, 312, 315, 398, 651, 717
Sau3AI	GATC	3 cut(s)	84, 529, 766
Sau96I	GGNCC	2 cut(s)	602, 644
ScaI	AGTACT	1 cut(s)	440
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	89, 743
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	2 cut(s)	60, 564
SmiMI	CAYNNNNRTG	1 cut(s)	793
Sse9I	AATT	2 cut(s)	323, 479
SsiI	CCGC	1 cut(s)	397
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	87, 741
StyI	CCWWGG	2 cut(s)	34, 591
TaaI	ACNGT	5 cut(s)	61, 208, 259, 577, 729
TaiI	ACGT	1 cut(s)	150
TasI	AATT	2 cut(s)	323, 479
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	4 cut(s)	286, 446, 625, 673
Tru1I	TTAA	1 cut(s)	425
Tru9I	TTAA	1 cut(s)	425
TscAI	CASTG	3 cut(s)	532, 616, 732
TseFI	GTSAC	2 cut(s)	357, 430
TseI	GCWGC	5 cut(s)	173, 311, 314, 650, 716
Tsp45I	GTSAC	2 cut(s)	357, 430
TspDTI	ATGAA	2 cut(s)	472, 638
TspRI	CASTG	3 cut(s)	532, 616, 732
Van91I	CCANNNNNTGG	2 cut(s)	121, 611
XapI	RAATTY	2 cut(s)	323, 479
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	1 cut(s)	380
ZrmI	AGTACT	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.