Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Forward (+)

1798555 .. 1800333

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1025400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCTGATCAAGTTGCGGTAACGTTGGAAGAAGGGCGCAGTGGTAACTCGGAGCGTTCTGGATTTTGGCATTCTCCAGAGATTGTTCAACTTACCCAAAAGGTAATTGCAGAGGTGATAGGGACATATTTTGTGATATTTATTGGATGTGGCTCGGTAGCAGTGAATAAAATTTACGGTTCAGTAACATTTCCAGGAATTTGCTTTACATGGGGATTAATCGTCATGGTTATGGTCTATTCCCTTGGCCATATCTCCGGTGCCCACTTTAATCCGGCCGTTACCGTCACCTTCGCCATCTTCCGCCATTTTCCACTCAAACAGGTGCCTCTGTATATTGCAGCGCATGTGTTAGGATCCATCCTTGCAAGCGGGACGTTATGCCTTGTTTTGGACGTGCCCCAAACGGCATATTTTGGAACAATACCAGTTGGACCAAACATTCGATCTTTGCTCATGGAGATCATTGCCTCTTTTCTCTTGATGTTTGTTATTTCAGGCGTCGCCACAGACAGCAGAGCTATTGGAGAATTGGCAGGAATTGCTGTAGGAATGACAATAACCATCGACGTCTTTGTTGCCGGACCGATCTCAGGGGCATCGATGAACCCAGCACGGAGCCTAGGGCCAGCAATAGTGATGCACACTTACAAGGGAATATGGATCTATTTTGTAGGTCCATTCATTGGCACCATACTCGGTGGATTTGTATACAATCTCATTCGGTTCACTGACAAACCATTGAAAGAGTTAACTGACAAACCAGTACTGCGGGAGTTAAGCAAGAGTGCTTCCTTCTTCAAATCCGTCTCCAAAAACAATTCTAATAGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

279

Amino Acids

29.94

Weight (kDa)

8.97

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	29 - 238	1.1e-58	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	573
AccB1I	GGYRCC	3 cut(s)	260, 325, 689
AccB7I	CCANNNNNTGG	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	711
AciI	CCGC	4 cut(s)	17, 304, 372, 772
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	3 cut(s)	351, 364, 671
AcoI	YGGCCR	2 cut(s)	247, 276
AcsI	RAATTY	2 cut(s)	171, 198
AcyI	GRCGYC	2 cut(s)	501, 570
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	3 cut(s)	391, 593, 686
AgsI	TTSAA	3 cut(s)	89, 745, 802
AjiI	CACGTC	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	1 cut(s)	521
AluI	AGCT	1 cut(s)	521
Alw26I	GTCTC	1 cut(s)	814
AlwI	GGATC	3 cut(s)	351, 364, 671
AoxI	GGCC	3 cut(s)	247, 276, 626
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	2 cut(s)	171, 198
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
AseI	ATTAAT	1 cut(s)	218
AspA2I	CCTAGG	1 cut(s)	622
AspLEI	GCGC	2 cut(s)	39, 346
AspS9I	GGNCC	4 cut(s)	434, 584, 626, 677
AsuHPI	GGTGA	2 cut(s)	127, 280
AvaII	GGWCC	3 cut(s)	434, 584, 677
AvrII	CCTAGG	1 cut(s)	622
BaeGI	GKGCMC	2 cut(s)	265, 402
BalI	TGGCCA	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	356
BanI	GGYRCC	3 cut(s)	260, 325, 689
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	3 cut(s)	305, 368, 572
BceAI	ACGGC	2 cut(s)	263, 423
BcgI	CGANNNNNNTGC	2 cut(s)	679, 713
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	814
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	1 cut(s)	546
BisI	GCNGC	1 cut(s)	342
BlnI	CCTAGG	1 cut(s)	622
BlsI	GCNGC	1 cut(s)	343
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	3 cut(s)	434, 584, 677
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	4 cut(s)	434, 584, 626, 677
BmiI	GGNNCC	5 cut(s)	262, 327, 358, 620, 691
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	608, 630
BpmI	CTGGAG	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	602
BsaHI	GRCGYC	2 cut(s)	501, 570
BsaJI	CCNNGG	2 cut(s)	244, 622
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 593, 686
Bse1I	ACTGG	2 cut(s)	428, 764
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	602
BseDI	CCNNGG	2 cut(s)	244, 622
BseGI	GGATG	2 cut(s)	152, 360
BseLI	CCNNNNNNNGG	3 cut(s)	391, 593, 686
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	2 cut(s)	428, 764
BseSI	GKGCMC	2 cut(s)	265, 402
BseX3I	CGGCCG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	353
BseYI	CCCAGC	1 cut(s)	610
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	249, 278, 628
BshNI	GGYRCC	3 cut(s)	260, 325, 689
BshVI	ATCGAT	1 cut(s)	602
BsiEI	CGRYCG	1 cut(s)	279
BsiSI	CCGG	3 cut(s)	258, 275, 582
BslFI	GGGAC	2 cut(s)	136, 388
BslI	CCNNNNNNNGG	3 cut(s)	391, 593, 686
BsmAI	GTCTC	1 cut(s)	814
BsmBI	CGTCTC	1 cut(s)	814
BsmFI	GGGAC	2 cut(s)	136, 388
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	3 cut(s)	249, 278, 628
Bsp1286I	GDGCHC	2 cut(s)	265, 402
Bsp143I	GATC	6 cut(s)	7, 356, 446, 462, 588, 663
BspACI	CCGC	4 cut(s)	17, 304, 372, 772
BspANI	GGCC	3 cut(s)	249, 278, 628
BspCNI	CTCAG	1 cut(s)	605
BspDI	ATCGAT	1 cut(s)	602
BspLI	GGNNCC	5 cut(s)	262, 327, 358, 620, 691
BspPI	GGATC	3 cut(s)	351, 364, 671
BspT107I	GGYRCC	3 cut(s)	260, 325, 689
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	428, 764
BssECI	CCNNGG	2 cut(s)	244, 622
BssMI	GATC	6 cut(s)	7, 356, 446, 462, 588, 663
BssNAI	GTATAC	1 cut(s)	712
BssNI	GRCGYC	2 cut(s)	501, 570
BssT1I	CCWWGG	2 cut(s)	244, 622
Bst1107I	GTATAC	1 cut(s)	712
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	179, 286
BstACI	GRCGYC	2 cut(s)	501, 570
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	370, 630
BstDEI	CTNAG	1 cut(s)	592
BstF5I	GGATG	2 cut(s)	152, 360
BstHHI	GCGC	2 cut(s)	39, 346
BstKTI	GATC	6 cut(s)	10, 359, 449, 465, 591, 666
BstMAI	GTCTC	1 cut(s)	814
BstMBI	GATC	6 cut(s)	7, 356, 446, 462, 588, 663
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	2 cut(s)	265, 402
BstV1I	GCAGC	1 cut(s)	353
BstX2I	RGATCY	2 cut(s)	356, 663
BstYI	RGATCY	2 cut(s)	356, 663
BstZ17I	GTATAC	1 cut(s)	712
BstZI	CGGCCG	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	602
BsuRI	GGCC	3 cut(s)	249, 278, 628
BsuTUI	ATCGAT	1 cut(s)	602
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	2 cut(s)	152, 360
BtsI	GCAGTG	2 cut(s)	46, 168
BtsIMutI	CAGTG	3 cut(s)	46, 168, 729
Cac8I	GCNNGC	2 cut(s)	370, 630
CfoI	GCGC	2 cut(s)	39, 346
Cfr13I	GGNCC	4 cut(s)	434, 584, 626, 677
ClaI	ATCGAT	1 cut(s)	602
CpoI	CGGWCCG	1 cut(s)	584
CseI	GACGC	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	767
CspI	CGGWCCG	1 cut(s)	584
CviAII	CATG	4 cut(s)	210, 226, 347, 457
CviJI	RGCY	6 cut(s)	153, 249, 278, 521, 621, 628
CviKI_1	RGCY	6 cut(s)	153, 249, 278, 521, 621, 628
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	1 cut(s)	592
DpnI	GATC	6 cut(s)	9, 358, 448, 464, 590, 665
DpnII	GATC	6 cut(s)	7, 356, 446, 462, 588, 663
EaeI	YGGCCR	2 cut(s)	247, 276
EagI	CGGCCG	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	293
EclXI	CGGCCG	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	244, 622
Eco47I	GGWCC	3 cut(s)	434, 584, 677
Eco52I	CGGCCG	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	244, 622
ErhI	CCWWGG	2 cut(s)	244, 622
Esp3I	CGTCTC	1 cut(s)	814
FaeI	CATG	4 cut(s)	213, 229, 350, 460
FaqI	GGGAC	2 cut(s)	136, 388
FatI	CATG	4 cut(s)	209, 225, 346, 456
FauI	CCCGC	2 cut(s)	365, 765
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	2 cut(s)	159, 347
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	1 cut(s)	623
GlaI	GCGC	2 cut(s)	38, 345
GluI	GCNGC	1 cut(s)	342
GsaI	CCCAGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	249, 278, 628
HapII	CCGG	3 cut(s)	258, 275, 582
HgaI	GACGC	1 cut(s)	490
HhaI	GCGC	2 cut(s)	39, 346
Hin1I	GRCGYC	2 cut(s)	501, 570
Hin1II	CATG	4 cut(s)	213, 229, 350, 460
Hin6I	GCGC	2 cut(s)	37, 344
HinP1I	GCGC	2 cut(s)	37, 344
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HpaI	GTTAAC	1 cut(s)	753
HpaII	CCGG	3 cut(s)	258, 275, 582
HphI	GGTGA	2 cut(s)	127, 280
Hpy166II	GTNNAC	3 cut(s)	712, 729, 753
Hpy188I	TCNGA	2 cut(s)	7, 52
Hpy188III	TCNNGA	3 cut(s)	60, 77, 481
Hpy8I	GTNNAC	3 cut(s)	712, 729, 753
Hpy99I	CGWCG	2 cut(s)	506, 572
HpyAV	CCTTC	3 cut(s)	26, 301, 805
HpyCH4III	ACNGT	2 cut(s)	179, 286
HpyCH4IV	ACGT	4 cut(s)	23, 377, 396, 570
HpyCH4V	TGCA	4 cut(s)	110, 341, 368, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	1 cut(s)	592
HpySE526I	ACGT	4 cut(s)	23, 377, 396, 570
Hsp92I	GRCGYC	2 cut(s)	501, 570
Hsp92II	CATG	4 cut(s)	213, 229, 350, 460
HspAI	GCGC	2 cut(s)	37, 344
Ksp22I	TGATCA	1 cut(s)	7
KspAI	GTTAAC	1 cut(s)	753
Kzo9I	GATC	6 cut(s)	7, 356, 446, 462, 588, 663
LmnI	GCTCC	2 cut(s)	52, 618
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	2 cut(s)	608, 630
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	4 cut(s)	23, 377, 396, 570
MaeIII	GTNAC	5 cut(s)	19, 44, 184, 280, 286
MalI	GATC	6 cut(s)	9, 358, 448, 464, 590, 665
MboI	GATC	6 cut(s)	7, 356, 446, 462, 588, 663
MboII	GAAGA	3 cut(s)	41, 292, 790
MflI	RGATCY	2 cut(s)	356, 663
MhlI	GDGCHC	2 cut(s)	265, 402
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	6 cut(s)	105, 171, 198, 530, 540, 820
MluNI	TGGCCA	1 cut(s)	249
MmeI	TCCRAC	2 cut(s)	6, 412
MnlI	CCTC	3 cut(s)	106, 339, 481
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	5 cut(s)	218, 270, 752, 779, 835
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	3 cut(s)	258, 275, 582
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	542
NdeII	GATC	6 cut(s)	7, 356, 446, 462, 588, 663
NlaIII	CATG	4 cut(s)	213, 229, 350, 460
NlaIV	GGNNCC	5 cut(s)	262, 327, 358, 620, 691
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	1 cut(s)	350
PctI	GAATGC	1 cut(s)	70
PflMI	CCANNNNNTGG	1 cut(s)	686
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	343
PshBI	ATTAAT	1 cut(s)	218
Psp1406I	AACGTT	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	5 cut(s)	262, 327, 358, 620, 691
PspPI	GGNCC	4 cut(s)	434, 584, 626, 677
PsuI	RGATCY	2 cut(s)	356, 663
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
RseI	CAYNNNNRTG	1 cut(s)	230
Rsr2I	CGGWCCG	1 cut(s)	584
RsrII	CGGWCCG	1 cut(s)	584
SaqAI	TTAA	5 cut(s)	218, 270, 752, 779, 835
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	6 cut(s)	7, 356, 446, 462, 588, 663
Sau96I	GGNCC	4 cut(s)	434, 584, 626, 677
ScaI	AGTACT	1 cut(s)	768
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	2 cut(s)	265, 402
SfaNI	GCATC	2 cut(s)	608, 630
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	3 cut(s)	434, 584, 677
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	6 cut(s)	105, 171, 198, 530, 540, 820
SsiI	CCGC	4 cut(s)	17, 304, 372, 772
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	2 cut(s)	244, 622
TaaI	ACNGT	2 cut(s)	179, 286
TaiI	ACGT	4 cut(s)	26, 380, 399, 573
TaqI	TCGA	3 cut(s)	445, 567, 602
TaqII	GACCGA	1 cut(s)	601
TasI	AATT	6 cut(s)	105, 171, 198, 530, 540, 820
TatI	WGTACW	1 cut(s)	766
Tru1I	TTAA	5 cut(s)	218, 270, 752, 779, 835
Tru9I	TTAA	5 cut(s)	218, 270, 752, 779, 835
TscAI	CASTG	3 cut(s)	46, 168, 736
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	620, 673
TspGWI	ACGGA	2 cut(s)	631, 796
TspRI	CASTG	3 cut(s)	46, 168, 736
Van91I	CCANNNNNTGG	1 cut(s)	686
VpaK11BI	GGWCC	3 cut(s)	434, 584, 677
VspI	ATTAAT	1 cut(s)	218
XapI	RAATTY	2 cut(s)	171, 198
XceI	RCATGY	1 cut(s)	350
XmaJI	CCTAGG	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	1 cut(s)	623
ZraI	GACGTC	1 cut(s)	571
ZrmI	AGTACT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.