Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Forward (+)

52895268 .. 52896915

Gene Structure 1648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG450700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAATGTGAGAATGGCTATCTACTTTAGAAGAAGCAGATGCAAATGGGATCCGGCTGAAATTCCTCTAACAATCTTCCAAAAGATGTTGGCAGAGCTAGTGGGAACGTACGTTCTTGTATTTATGGGGTGTGGGACTGCTCTTGTCAACAGAACACATCCTCTTACGACTGTGGGCATGGCAATGGTATGGGGTCTTCTTTTGATGGCACTTATACAGTTGGGCATAGTCTCTGGTTGCCATTTGAATCCTGCTGTTTCTATTGCCTTGGCTGCTGATCGCAAATTTCCATACAAACATATGACGGCTGCAACACTAGCAAGCCCGACTCTGAGGCTGTTGTTTCAAGACAATATTAACGTGACGGTGACTCTCTACTCTGATTCAACAACTCACCTACAAGCCCTCGTCTGGGAATTCATAGCCACTTTTATACTGATGTTCACCATTTTTGGTGTAGCCACTGATCACAGAGCGAGCAAGAACTTATCTGGAGTTGCAATAGGTGTTACAGTTCTGTTCAATGCCACGGTTGCTGGGCCAATCACTGGAGCTTCCATGAATCCGGCAAGGAGTTTTGGCCCTGCTGCTGTTACTGGTATTTATAAGAATCTTTGGGTCTATCTTTTAGCTCCTATTCTCGGGGCGCTTGCTGCTACTGCATTGTATAGTGTTCTCCGGGTGTCTGAGCCAGTGAAATCTGATCCAAATGACAAAACACTTCCACTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012506 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

244

Amino Acids

26.41

Weight (kDa)

9.51

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	25 - 223	3e-44	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AccB7I	CCANNNNNTGG	1 cut(s)	548
AclWI	GGATC	3 cut(s)	44, 57, 698
AcsI	RAATTY	3 cut(s)	60, 284, 416
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	4 cut(s)	411, 412, 548, 641
AgsI	TTSAA	4 cut(s)	247, 347, 387, 523
AhlI	ACTAGT	1 cut(s)	727
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	3 cut(s)	97, 554, 632
AluI	AGCT	3 cut(s)	97, 554, 632
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	3 cut(s)	44, 57, 698
Ama87I	CYCGRG	1 cut(s)	641
AoxI	GGCC	2 cut(s)	539, 580
ApeKI	GCWGC	4 cut(s)	272, 308, 587, 653
ApoI	RAATTY	3 cut(s)	60, 284, 416
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	2 cut(s)	539, 581
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	3 cut(s)	379, 386, 436
AvaI	CYCGRG	1 cut(s)	641
BamHI	GGATCC	1 cut(s)	49
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	4 cut(s)	259, 295, 574, 640
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	321
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	235
BcuI	ACTAGT	1 cut(s)	727
BfaI	CTAG	3 cut(s)	98, 317, 728
BfoI	RGCGCY	1 cut(s)	650
BisI	GCNGC	4 cut(s)	273, 309, 588, 654
BlsI	GCNGC	4 cut(s)	274, 310, 589, 655
Bme1390I	CCNGG	1 cut(s)	680
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	2 cut(s)	539, 581
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	2 cut(s)	513, 570
BpuMI	CCSGG	1 cut(s)	680
BsaJI	CCNNGG	2 cut(s)	267, 528
Bsc4I	CCNNNNNNNGG	4 cut(s)	411, 412, 548, 641
Bse1I	ACTGG	3 cut(s)	553, 601, 692
Bse3DI	GCAATG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	267, 528
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	4 cut(s)	411, 412, 548, 641
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	323, 678
BseNI	ACTGG	3 cut(s)	553, 601, 692
BseXI	GCAGC	4 cut(s)	259, 295, 574, 640
BseYI	CCCAGC	1 cut(s)	536
BshFI	GGCC	2 cut(s)	541, 582
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	3 cut(s)	53, 566, 679
BsiWI	CGTACG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	4 cut(s)	411, 412, 548, 641
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	541, 582
BsoBI	CYCGRG	1 cut(s)	641
Bsp143I	GATC	4 cut(s)	49, 277, 466, 703
BspANI	GGCC	2 cut(s)	541, 582
BspCNI	CTCAG	2 cut(s)	324, 679
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	3 cut(s)	44, 57, 698
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	553, 601, 692
BssECI	CCNNGG	2 cut(s)	267, 528
BssMI	GATC	4 cut(s)	49, 277, 466, 703
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	5 cut(s)	172, 219, 367, 514, 532
BstC8I	GCNNGC	3 cut(s)	322, 478, 651
BstDEI	CTNAG	2 cut(s)	332, 687
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	4 cut(s)	52, 280, 469, 706
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	4 cut(s)	49, 277, 466, 703
BstMWI	GCNNNNNNNGC	5 cut(s)	272, 317, 533, 653, 659
BstSCI	CCNGG	1 cut(s)	678
BstV1I	GCAGC	4 cut(s)	259, 295, 574, 640
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	541, 582
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	3 cut(s)	462, 546, 699
Cac8I	GCNNGC	3 cut(s)	322, 478, 651
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	2 cut(s)	539, 581
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	178, 559
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	332, 687
DpnI	GATC	4 cut(s)	51, 279, 468, 705
DpnII	GATC	4 cut(s)	49, 277, 466, 703
Eco130I	CCWWGG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	641
EcoRI	GAATTC	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	181, 562
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	177, 558
FauNDI	CATATG	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	4 cut(s)	273, 309, 588, 654
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	4 cut(s)	273, 309, 588, 654
FspBI	CTAG	3 cut(s)	98, 317, 728
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	4 cut(s)	273, 309, 588, 654
GsaI	CCCAGC	1 cut(s)	540
GsuI	CTGGAG	2 cut(s)	513, 570
HaeII	RGCGCY	1 cut(s)	650
HaeIII	GGCC	2 cut(s)	541, 582
HapII	CCGG	3 cut(s)	53, 566, 679
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	2 cut(s)	181, 562
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	6 cut(s)	247, 328, 370, 383, 562, 610
HpaII	CCGG	3 cut(s)	53, 566, 679
HphI	GGTGA	3 cut(s)	379, 386, 436
Hpy166II	GTNNAC	2 cut(s)	148, 444
Hpy188I	TCNGA	4 cut(s)	333, 382, 688, 703
Hpy188III	TCNNGA	2 cut(s)	347, 492
Hpy8I	GTNNAC	2 cut(s)	148, 444
HpyCH4III	ACNGT	5 cut(s)	172, 219, 367, 514, 532
HpyCH4IV	ACGT	3 cut(s)	107, 111, 360
HpyCH4V	TGCA	4 cut(s)	42, 311, 500, 662
HpyF10VI	GCNNNNNNNGC	5 cut(s)	272, 317, 533, 653, 659
HpyF3I	CTNAG	2 cut(s)	332, 687
HpySE526I	ACGT	3 cut(s)	107, 111, 360
Hsp92II	CATG	2 cut(s)	181, 562
HspAI	GCGC	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	49, 277, 466, 703
LmnI	GCTCC	2 cut(s)	551, 637
Lsp1109I	GCAGC	4 cut(s)	259, 295, 574, 640
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	3 cut(s)	98, 317, 728
MaeII	ACGT	3 cut(s)	107, 111, 360
MaeIII	GTNAC	4 cut(s)	361, 367, 508, 592
MalI	GATC	4 cut(s)	51, 279, 468, 705
MboI	GATC	4 cut(s)	49, 277, 466, 703
MboII	GAAGA	3 cut(s)	42, 67, 188
MflI	RGATCY	1 cut(s)	49
MluCI	AATT	3 cut(s)	60, 284, 416
MlyI	GAGTC	2 cut(s)	322, 364
MnlI	CCTC	4 cut(s)	75, 171, 327, 416
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	2 cut(s)	182, 730
MspI	CCGG	3 cut(s)	53, 566, 679
MspR9I	CCNGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	5 cut(s)	272, 317, 533, 653, 659
NciI	CCSGG	1 cut(s)	680
NdeI	CATATG	1 cut(s)	300
NdeII	GATC	4 cut(s)	49, 277, 466, 703
NlaIII	CATG	2 cut(s)	181, 562
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	361, 367
PfeI	GAWTC	4 cut(s)	247, 383, 562, 610
Pfl23II	CGTACG	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	4 cut(s)	274, 310, 589, 655
PleI	GAGTC	2 cut(s)	322, 364
PpsI	GAGTC	2 cut(s)	322, 364
PsiI	TTATAA	1 cut(s)	606
PspFI	CCCAGC	1 cut(s)	536
PspLI	CGTACG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	539, 581
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	2 cut(s)	182, 730
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	4 cut(s)	273, 309, 588, 654
Sau3AI	GATC	4 cut(s)	49, 277, 466, 703
Sau96I	GGNCC	2 cut(s)	539, 581
SchI	GAGTC	2 cut(s)	322, 364
ScrFI	CCNGG	1 cut(s)	680
SetI	ASST	8 cut(s)	99, 110, 114, 363, 399, 508, 556, 634
SfaNI	GCATC	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	182, 730
SpeI	ACTAGT	1 cut(s)	727
Sse9I	AATT	3 cut(s)	60, 284, 416
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	3 cut(s)	98, 317, 728
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	5 cut(s)	172, 219, 367, 514, 532
TaiI	ACGT	3 cut(s)	110, 114, 363
TasI	AATT	3 cut(s)	60, 284, 416
TfiI	GAWTC	4 cut(s)	247, 383, 562, 610
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	3 cut(s)	469, 553, 699
TseFI	GTSAC	2 cut(s)	361, 367
TseI	GCWGC	4 cut(s)	272, 308, 587, 653
Tsp45I	GTSAC	2 cut(s)	361, 367
TspDTI	ATGAA	3 cut(s)	17, 409, 575
TspRI	CASTG	3 cut(s)	469, 553, 699
Van91I	CCANNNNNTGG	1 cut(s)	548
XapI	RAATTY	3 cut(s)	60, 284, 416
XspI	CTAG	3 cut(s)	98, 317, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.