Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Reverse (-)

62017321 .. 62019154

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCCGATCCACAAATTCTGACAACATTGGAAGAAGGTGCCGGCAGCTCGCCCCCGACTAAGAGCAGATTTTCTGGGCTTTGTTCATCTTCTGAGATTGTTCACCTTCTCCAAAAGCTAATTGCAGAGGTGATGGGTACATATTTCTTGATATTTGCTGGCTGTGGTTCGATAGTGGTGAACAAGATATATGGTTCAATAACATTTCCAGGGGTGGCTGTTGTCTGGGGCTTAACCGCTATGGTCATGATCTATTCCGTTGGTCATATCTCAGGCGCCCATTTTAATCCCGCCGTCACCCTTACTTTTACCATCTTTCGCGATTTTCCTCTCAAACAGTTACCTCTGTACATCGTGGCGCAGCTTTTAGGTTCCATACTTGCGAGTGGGACGTTATGCCTTTGTTTCACCGTACATCCGGATGATTTCTTTGGAACTGTACCGGTTGGATCATATGTTCAATCTTTGGTCATTGAAATCATTGCCTCATTTCTCTTGATGTTCGTCATTTCCGGCGTTGCCACAGATAATAGAGCTATTGGCCAAATGGCAGGAATTGCTATAGGAATGACCATATTAGTCGATGTCTTCGTTTGCGGTGCTGAACAGGCCTGTATCAGGGGCGTCGATGAACCCAGCTCGGAGCATTGGGCCGGCATTGATTATGAAGATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

225

Amino Acids

23.98

Weight (kDa)

4.67

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	34 - 200	8.8e-39	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	38, 275
AccII	CGCG	1 cut(s)	321
AccIII	TCCGGA	1 cut(s)	418
AciI	CCGC	3 cut(s)	237, 291, 597
AclWI	GGATC	2 cut(s)	2, 457
AcoI	YGGCCR	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	15
AcyI	GRCGYC	2 cut(s)	276, 624
AfaI	GTAC	4 cut(s)	139, 350, 414, 441
AfiI	CCNNNNNNNGG	1 cut(s)	618
AgeI	ACCGGT	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	198, 461, 476
AjnI	CCWGG	1 cut(s)	208
AloI	GAACNNNNNNTCC	2 cut(s)	441, 473
AluBI	AGCT	5 cut(s)	48, 118, 364, 536, 639
AluI	AGCT	5 cut(s)	48, 118, 364, 536, 639
AlwI	GGATC	2 cut(s)	2, 457
Aor13HI	TCCGGA	1 cut(s)	418
AoxI	GGCC	3 cut(s)	541, 609, 651
ApeKI	GCWGC	2 cut(s)	45, 361
ApoI	RAATTY	1 cut(s)	15
AsiGI	ACCGGT	1 cut(s)	442
AspLEI	GCGC	2 cut(s)	278, 361
AspS9I	GGNCC	1 cut(s)	651
AsuHPI	GGTGA	5 cut(s)	95, 142, 190, 289, 400
BalI	TGGCCA	1 cut(s)	543
BanI	GGYRCC	2 cut(s)	38, 275
BbsI	GAAGAC	1 cut(s)	580
BbvI	GCAGC	2 cut(s)	57, 373
BccI	CCATC	2 cut(s)	127, 320
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	279
BisI	GCNGC	2 cut(s)	46, 362
BlsI	GCNGC	2 cut(s)	47, 363
Bme1390I	CCNGG	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	651
BmiI	GGNNCC	3 cut(s)	40, 277, 373
BmrFI	CCNGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	580
BsaHI	GRCGYC	2 cut(s)	276, 624
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	2 cut(s)	418, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	618
Bse118I	RCCGGY	3 cut(s)	41, 442, 653
Bse3DI	GCAATG	1 cut(s)	480
BseAI	TCCGGA	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	2 cut(s)	415, 427
BseLI	CCNNNNNNNGG	1 cut(s)	618
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	84, 285
BseXI	GCAGC	2 cut(s)	57, 373
BseYI	CCCAGC	1 cut(s)	635
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	3 cut(s)	543, 611, 653
BshNI	GGYRCC	2 cut(s)	38, 275
BshTI	ACCGGT	1 cut(s)	442
BsiSI	CCGG	5 cut(s)	42, 419, 443, 513, 654
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	618
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	3 cut(s)	543, 611, 653
Bsp13I	TCCGGA	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	7, 249, 449
Bsp68I	TCGCGA	1 cut(s)	321
BspACI	CCGC	3 cut(s)	237, 291, 597
BspANI	GGCC	3 cut(s)	543, 611, 653
BspCNI	CTCAG	2 cut(s)	85, 284
BspEI	TCCGGA	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	40, 277, 373
BspPI	GGATC	2 cut(s)	2, 457
BspT107I	GGYRCC	2 cut(s)	38, 275
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	3 cut(s)	41, 442, 653
BsrGI	TGTACA	1 cut(s)	348
BssAI	RCCGGY	3 cut(s)	41, 442, 653
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	3 cut(s)	7, 249, 449
BssNI	GRCGYC	2 cut(s)	276, 624
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	339, 412, 439
BstACI	GRCGYC	2 cut(s)	276, 624
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	4 cut(s)	43, 50, 160, 655
BstDEI	CTNAG	3 cut(s)	60, 93, 271
BstENI	CCTNNNNNAGG	1 cut(s)	616
BstF5I	GGATG	2 cut(s)	415, 427
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	278, 361
BstKTI	GATC	3 cut(s)	10, 252, 452
BstMBI	GATC	3 cut(s)	7, 249, 449
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 608
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	561
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	57, 373
BstV2I	GAAGAC	1 cut(s)	580
BsuRI	GGCC	3 cut(s)	543, 611, 653
BtsCI	GGATG	2 cut(s)	415, 427
BtuMI	TCGCGA	1 cut(s)	321
Cac8I	GCNNGC	4 cut(s)	43, 50, 160, 655
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	2 cut(s)	278, 361
Cfr10I	RCCGGY	3 cut(s)	41, 442, 653
Cfr13I	GGNCC	1 cut(s)	651
CseI	GACGC	1 cut(s)	613
Csp6I	GTAC	4 cut(s)	138, 349, 413, 440
CspAI	ACCGGT	1 cut(s)	442
CviAII	CATG	1 cut(s)	247
CviQI	GTAC	4 cut(s)	138, 349, 413, 440
DdeI	CTNAG	3 cut(s)	60, 93, 271
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	3 cut(s)	9, 251, 451
DpnII	GATC	3 cut(s)	7, 249, 449
EaeI	YGGCCR	1 cut(s)	541
Eco147I	AGGCCT	1 cut(s)	611
EcoNI	CCTNNNNNAGG	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	208
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
FaeI	CATG	1 cut(s)	250
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	1 cut(s)	246
FauI	CCCGC	1 cut(s)	298
FauNDI	CATATG	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	46, 362
FokI	GGATG	2 cut(s)	402, 434
Fsp4HI	GCNGC	2 cut(s)	46, 362
GlaI	GCGC	2 cut(s)	277, 360
GluI	GCNGC	2 cut(s)	46, 362
GsaI	CCCAGC	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	3 cut(s)	543, 611, 653
HapII	CCGG	5 cut(s)	42, 419, 443, 513, 654
HgaI	GACGC	1 cut(s)	613
HhaI	GCGC	2 cut(s)	278, 361
Hin1I	GRCGYC	2 cut(s)	276, 624
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	2 cut(s)	276, 359
HinP1I	GCGC	2 cut(s)	276, 359
HpaII	CCGG	5 cut(s)	42, 419, 443, 513, 654
HphI	GGTGA	5 cut(s)	95, 142, 190, 289, 400
Hpy166II	GTNNAC	2 cut(s)	103, 181
Hpy188I	TCNGA	4 cut(s)	7, 21, 94, 643
Hpy188III	TCNNGA	5 cut(s)	148, 247, 320, 419, 496
Hpy8I	GTNNAC	2 cut(s)	103, 181
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	2 cut(s)	29, 116
HpyCH4III	ACNGT	3 cut(s)	339, 412, 439
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 608
HpyF3I	CTNAG	3 cut(s)	60, 93, 271
HpySE526I	ACGT	1 cut(s)	392
Hsp92I	GRCGYC	2 cut(s)	276, 624
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	2 cut(s)	276, 359
KasI	GGCGCC	1 cut(s)	275
Kpn2I	TCCGGA	1 cut(s)	418
KroI	GCCGGC	2 cut(s)	41, 653
KroNI	GCCGGC	2 cut(s)	43, 655
Kzo9I	GATC	3 cut(s)	7, 249, 449
LmnI	GCTCC	1 cut(s)	643
Lsp1109I	GCAGC	2 cut(s)	57, 373
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	295, 339
MalI	GATC	3 cut(s)	9, 251, 451
MboI	GATC	3 cut(s)	7, 249, 449
MboII	GAAGA	3 cut(s)	44, 81, 580
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	3 cut(s)	15, 120, 555
MluNI	TGGCCA	1 cut(s)	543
Mly113I	GGCGCC	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	4 cut(s)	121, 339, 354, 496
Mox20I	TGGCCA	1 cut(s)	543
MroI	TCCGGA	1 cut(s)	418
MroNI	GCCGGC	2 cut(s)	41, 653
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	3 cut(s)	233, 285, 676
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	543
MspI	CCGG	5 cut(s)	42, 419, 443, 513, 654
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	557, 608
NaeI	GCCGGC	2 cut(s)	43, 655
NarI	GGCGCC	1 cut(s)	276
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	3 cut(s)	7, 249, 449
NgoMIV	GCCGGC	2 cut(s)	41, 653
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	3 cut(s)	40, 277, 373
NmuCI	GTSAC	1 cut(s)	295
NruI	TCGCGA	1 cut(s)	321
PagI	TCATGA	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	611
PcsI	WCGNNNNNNNCGW	1 cut(s)	588
PdiI	GCCGGC	2 cut(s)	43, 655
PinAI	ACCGGT	1 cut(s)	442
PkrI	GCNGC	2 cut(s)	47, 363
PluTI	GGCGCC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	40, 277, 373
PspPI	GGNCC	1 cut(s)	651
RruI	TCGCGA	1 cut(s)	321
RsaI	GTAC	4 cut(s)	139, 350, 414, 441
RsaNI	GTAC	4 cut(s)	138, 349, 413, 440
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	3 cut(s)	233, 285, 676
SatI	GCNGC	2 cut(s)	46, 362
Sau3AI	GATC	3 cut(s)	7, 249, 449
Sau96I	GGNCC	1 cut(s)	651
ScrFI	CCNGG	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	561
SfoI	GGCGCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	3 cut(s)	15, 120, 555
SseBI	AGGCCT	1 cut(s)	611
SsiI	CCGC	3 cut(s)	237, 291, 597
SspDI	GGCGCC	1 cut(s)	275
StuI	AGGCCT	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	3 cut(s)	339, 412, 439
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	3 cut(s)	170, 582, 627
TasI	AATT	3 cut(s)	15, 120, 555
TatI	WGTACW	1 cut(s)	348
Tru1I	TTAA	3 cut(s)	233, 285, 676
Tru9I	TTAA	3 cut(s)	233, 285, 676
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	45, 361
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	75, 645
TspGWI	ACGGA	1 cut(s)	247
XagI	CCTNNNNNAGG	1 cut(s)	616
XapI	RAATTY	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.