Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Reverse (-)

5692550 .. 5694635

Gene Structure 2086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000801

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCAATTTCACTAGCATCTGTTCCCCGTAATTGTACTGCTAGTTTCTCTAGTCTATTGTTGAGCAAGAACTTATCTGGAATTGCAATAGGTGTTACAGTTCTGTTCAATGCCACGGTTGCTGGGCCAATCACTGAAGCTTCCATCAATCCTGCAAGGAGTTTTGGCCCTGCTGCTGTTACTGGTATTTATAAGAATCTTTGGGTCTTTCTTTTAGCTCCTATTCTCAGGGCTCTTGCTGCTACTTCATTGTATAGTGTTCTCCGGGTGTCTGAGCCAGTGAAATCTGATCCAAATGACAAAACACTTCCACCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012506 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

107

Amino Acids

11.03

Weight (kDa)

9.74

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	24 - 85	3.5e-15	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
AclWI	GGATC	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	2 cut(s)	140, 218
AluI	AGCT	2 cut(s)	140, 218
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	2 cut(s)	125, 166
ApeKI	GCWGC	2 cut(s)	173, 239
AspS9I	GGNCC	2 cut(s)	125, 167
AsuC2I	CCSGG	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	235
BbvI	GCAGC	2 cut(s)	160, 226
BccI	CCATC	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	266
BfaI	CTAG	3 cut(s)	14, 42, 51
BisI	GCNGC	2 cut(s)	174, 240
BlsI	GCNGC	2 cut(s)	175, 241
Bme1390I	CCNGG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	125, 167
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	114
Bse1I	ACTGG	3 cut(s)	187, 278, 314
BseDI	CCNNGG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	241, 264
BseNI	ACTGG	3 cut(s)	187, 278, 314
BseXI	GCAGC	2 cut(s)	160, 226
BseYI	CCCAGC	1 cut(s)	122
BshFI	GGCC	2 cut(s)	127, 168
BsiSI	CCGG	1 cut(s)	265
BsnI	GGCC	2 cut(s)	127, 168
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	289
BspANI	GGCC	2 cut(s)	127, 168
BspCNI	CTCAG	2 cut(s)	240, 265
BspPI	GGATC	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	187, 278, 314
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	100, 118
BstDEI	CTNAG	2 cut(s)	227, 273
BstDSI	CCRYGG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 239
BstSCI	CCNGG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	160, 226
BsuRI	GGCC	2 cut(s)	127, 168
BtgI	CCRYGG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	132, 285
Cfr13I	GGNCC	2 cut(s)	125, 167
Csp6I	GTAC	1 cut(s)	36
CviJI	RGCY	6 cut(s)	127, 140, 168, 218, 233, 277
CviKI_1	RGCY	6 cut(s)	127, 140, 168, 218, 233, 277
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	2 cut(s)	227, 273
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	235
FaiI	YATR	3 cut(s)	192, 255, 319
Fnu4HI	GCNGC	2 cut(s)	174, 240
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	2 cut(s)	174, 240
FspBI	CTAG	3 cut(s)	14, 42, 51
GluI	GCNGC	2 cut(s)	174, 240
GsaI	CCCAGC	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	127, 168
HapII	CCGG	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	274, 289
Hpy188III	TCNNGA	1 cut(s)	78
HpyCH4III	ACNGT	2 cut(s)	100, 118
HpyCH4V	TGCA	2 cut(s)	86, 155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 239
HpyF3I	CTNAG	2 cut(s)	227, 273
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	8 cut(s)	63, 108, 165, 168, 183, 214, 278, 291
Lsp1109I	GCAGC	2 cut(s)	160, 226
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	3 cut(s)	14, 42, 51
MaeIII	GTNAC	2 cut(s)	94, 178
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	3 cut(s)	6, 31, 81
MslI	CAYNNNNRTG	1 cut(s)	316
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	119, 239
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	175, 241
PsiI	TTATAA	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	125, 167
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	316
SatI	GCNGC	2 cut(s)	174, 240
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	2 cut(s)	125, 167
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	3 cut(s)	94, 142, 220
SfaNI	GCATC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	316
Sse9I	AATT	3 cut(s)	6, 31, 81
SspMI	CTAG	3 cut(s)	14, 42, 51
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	100, 118
TasI	AATT	3 cut(s)	6, 31, 81
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	196
TscAI	CASTG	2 cut(s)	139, 285
TseI	GCWGC	2 cut(s)	173, 239
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	139, 285
XspI	CTAG	3 cut(s)	14, 42, 51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.