Rorug07G0323800

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
33452163 .. 33452381
219 bp
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UTR
Exon/CDS
Intron
Rorug07G0323800.1

Sequence Viewer

Length: 219 bp
ATGGCCCTGCATATACCTAATCAATCGGGACGGCATGAAGGAGGCCTTGTTGACCTTGCTCATGCAAAGCCTGTGACGAATCAGCTTACTGAAATGACTCTTGGTCCTTGGGTGGATGAAATCATAGAGCTGAAACGCAAACACCAGAAACGATCACAAACAAAACCACAAACGTCGGTCAAGACGAAGCATACCTTGACTGTGAGCTTGACTGCTTGA

Protein Analysis

72

Amino Acids

8.03

Weight (kDa)

9.87

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AhdI GACNNNNNGTC 1 cut(s) 102
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 3 cut(s) 85, 130, 207
AluI AGCT 3 cut(s) 85, 130, 207
AoxI GGCC 2 cut(s) 3, 43
AspS9I GGNCC 2 cut(s) 4, 104
AvaII GGWCC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 104
BmeRI GACNNNNNGTC 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 4, 104
BsaJI CCNNGG 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 121
BshFI GGCC 2 cut(s) 5, 45
BslFI GGGAC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 2 cut(s) 5, 45
Bsp143I GATC 1 cut(s) 152
BspANI GGCC 2 cut(s) 5, 45
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 202
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BsuRI GGCC 2 cut(s) 5, 45
BtsCI GGATG 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 4, 104
CviAII CATG 2 cut(s) 35, 62
CviJI RGCY 6 cut(s) 5, 45, 70, 85, 130, 207
CviKI_1 RGCY 6 cut(s) 5, 45, 70, 85, 130, 207
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
DriI GACNNNNNGTC 1 cut(s) 102
Eam1105I GACNNNNNGTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 107
Eco147I AGGCCT 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 2 cut(s) 38, 65
FaiI YATR 6 cut(s) 12, 14, 36, 63, 125, 192
FalI AAGNNNNNCTT 4 cut(s) 30, 62, 179, 211
FaqI GGGAC 1 cut(s) 42
FatI CATG 2 cut(s) 34, 61
FokI GGATG 1 cut(s) 128
HaeIII GGCC 2 cut(s) 5, 45
Hin1II CATG 2 cut(s) 38, 65
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 2 cut(s) 79, 97
Hpy166II GTNNAC 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 27, 181
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 2 cut(s) 10, 65
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 2 cut(s) 38, 65
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 3 cut(s) 20, 84, 158
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 1 cut(s) 35
NdeII GATC 1 cut(s) 152
NlaIII CATG 2 cut(s) 38, 65
NmuCI GTSAC 1 cut(s) 73
PceI AGGCCT 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PfeI GAWTC 1 cut(s) 79
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 4, 104
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 2 cut(s) 4, 104
SchI GAGTC 1 cut(s) 91
SetI ASST 7 cut(s) 19, 57, 87, 132, 176, 197, 209
SinI GGWCC 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 45
StuI AGGCCT 1 cut(s) 45
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 1 cut(s) 176
TaqII GACCGA 1 cut(s) 166
TfiI GAWTC 1 cut(s) 79
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 51, 132
VpaK11BI GGWCC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.