Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Reverse (-)

15475888 .. 15477477

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATGGCAGAGCTTGTGGGCACATACATTCTTATATTTATAGGCTGTGGGGCTGCTCTTGTCAACAAAATACAACCTCTTACAATCGTGGGAATAGCAATCGTATGGGGTCTTGTTTTTATGGCCGCAGCATATGCAGTTGGGCATGTCTCTGGTGCACATTTCAATCCTGCAGTTACTATTGCCTTGGCTGCTGGCCGCATATTTCCAGTCAAACATGTACCTATGTATGTGATGTCACAATTGTCTGGTGCAACATTAGCAAGCCTGACCCTCAGGCTGTTATTTAACGACCAAGACAGTATTCAAGCAACCATGACTCAGTTCTCTGATCCAACAACTTACCTGCAAGCCCTCACTTGGGAATTCGTTATCACGTTTATACTGATGTTCACCATTTGTGGTGTTGTCACTGATGACAGAGCGGTACCATCCTGTACTTTTCTCAGTCTCTTTCTCGGTTCAGTTAGGGGCAAAAATCTCTCTGGAATTGCAATAGGTGGTGCATTTGTGGTGAATGTCATGATTGCTGGGCCAATCACTGGAGCTTCCATGAATCCTGCAAGGAGTTTGGGACCAGCTATCGTCACCGGAGTTTACAAGAACATTTGGGTTTATATTGCAGCCCCTATTCTTGGAGCCATTGCTGCTACTATGGTGTACAGTTTGCTCAGGGTACCTAAGCTGGTAAAATCTGATGAAAAGGGTGATCCAGTAAGATCACAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012506 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

244

Amino Acids

25.73

Weight (kDa)

9.05

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	354
Acc65I	GGTACC	2 cut(s)	427, 676
AccB1I	GGYRCC	2 cut(s)	427, 676
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccBSI	CCGCTC	1 cut(s)	425
AciI	CCGC	3 cut(s)	126, 199, 425
AclWI	GGATC	2 cut(s)	326, 704
AcoI	YGGCCR	2 cut(s)	123, 196
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	5 cut(s)	222, 429, 439, 662, 678
AfiI	CCNNNNNNNGG	4 cut(s)	360, 361, 542, 635
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	166, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	4 cut(s)	13, 548, 581, 685
AluI	AGCT	4 cut(s)	13, 548, 581, 685
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	2 cut(s)	154, 455
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	326, 704
AoxI	GGCC	3 cut(s)	123, 196, 533
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	5 cut(s)	53, 128, 191, 623, 647
ApoI	RAATTY	1 cut(s)	365
Asp718I	GGTACC	2 cut(s)	427, 676
AspS9I	GGNCC	2 cut(s)	533, 575
AsuHPI	GGTGA	4 cut(s)	385, 526, 580, 719
AvaII	GGWCC	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	275
BaeGI	GKGCMC	2 cut(s)	23, 160
BanI	GGYRCC	2 cut(s)	427, 676
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	5 cut(s)	40, 140, 178, 634, 635
BccI	CCATC	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	154, 455
BfmI	CTRYAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	354
BisI	GCNGC	7 cut(s)	54, 126, 129, 192, 199, 624, 648
BlsI	GCNGC	7 cut(s)	55, 127, 130, 193, 200, 625, 649
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	533, 575
BmiI	GGNNCC	4 cut(s)	429, 576, 640, 678
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	2 cut(s)	671, 681
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	590
Bsc4I	CCNNNNNNNGG	4 cut(s)	360, 361, 542, 635
Bse1I	ACTGG	3 cut(s)	209, 547, 713
Bse21I	CCTNAGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	4 cut(s)	360, 361, 542, 635
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	4 cut(s)	289, 335, 460, 685
BseNI	ACTGG	3 cut(s)	209, 547, 713
BseSI	GKGCMC	2 cut(s)	23, 160
BseXI	GCAGC	5 cut(s)	40, 140, 178, 634, 635
BseYI	CCCAGC	1 cut(s)	530
BshFI	GGCC	3 cut(s)	125, 198, 535
BshNI	GGYRCC	2 cut(s)	427, 676
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	591
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	4 cut(s)	360, 361, 542, 635
BsmAI	GTCTC	2 cut(s)	154, 455
BsmFI	GGGAC	1 cut(s)	588
BsnI	GGCC	3 cut(s)	125, 198, 535
Bsp1286I	GDGCHC	2 cut(s)	23, 160
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	3 cut(s)	331, 709, 719
BspACI	CCGC	3 cut(s)	126, 199, 425
BspANI	GGCC	3 cut(s)	125, 198, 535
BspCNI	CTCAG	4 cut(s)	288, 334, 459, 684
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	4 cut(s)	429, 576, 640, 678
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	2 cut(s)	326, 704
BspT107I	GGYRCC	2 cut(s)	427, 676
BsrBI	CCGCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	642
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	3 cut(s)	209, 547, 713
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	331, 709, 719
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	302, 665
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	660
BstC8I	GCNNGC	3 cut(s)	196, 265, 351
BstDEI	CTNAG	5 cut(s)	275, 321, 446, 671, 681
BstF5I	GGATG	1 cut(s)	431
BstKTI	GATC	3 cut(s)	334, 712, 722
BstMAI	GTCTC	2 cut(s)	154, 455
BstMBI	GATC	3 cut(s)	331, 709, 719
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 191, 260, 647
BstNSI	RCATGY	2 cut(s)	149, 221
BstSFI	CTRYAG	1 cut(s)	171
BstSLI	GKGCMC	2 cut(s)	23, 160
BstV1I	GCAGC	5 cut(s)	40, 140, 178, 634, 635
Bsu36I	CCTNAGG	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	125, 198, 535
BtsCI	GGATG	1 cut(s)	431
BtsIMutI	CAGTG	2 cut(s)	411, 540
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	3 cut(s)	196, 265, 351
CciI	TCATGA	1 cut(s)	522
Cfr13I	GGNCC	2 cut(s)	533, 575
Csp6I	GTAC	5 cut(s)	221, 428, 438, 661, 677
CviAII	CATG	5 cut(s)	146, 218, 316, 523, 553
CviQI	GTAC	5 cut(s)	221, 428, 438, 661, 677
DdeI	CTNAG	5 cut(s)	275, 321, 446, 671, 681
DpnI	GATC	3 cut(s)	333, 711, 721
DpnII	GATC	3 cut(s)	331, 709, 719
EaeI	YGGCCR	2 cut(s)	123, 196
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	575
Eco81I	CCTNAGG	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	5 cut(s)	149, 221, 319, 526, 556
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	5 cut(s)	145, 217, 315, 522, 552
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	7 cut(s)	54, 126, 129, 192, 199, 624, 648
FokI	GGATG	1 cut(s)	418
Fsp4HI	GCNGC	7 cut(s)	54, 126, 129, 192, 199, 624, 648
GluI	GCNGC	7 cut(s)	54, 126, 129, 192, 199, 624, 648
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	125, 198, 535
HapII	CCGG	1 cut(s)	591
Hin1II	CATG	5 cut(s)	149, 221, 319, 526, 556
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	2 cut(s)	319, 556
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	4 cut(s)	385, 526, 580, 719
Hpy166II	GTNNAC	5 cut(s)	64, 158, 393, 598, 661
Hpy188I	TCNGA	3 cut(s)	331, 697, 731
Hpy188III	TCNNGA	2 cut(s)	486, 523
Hpy8I	GTNNAC	5 cut(s)	64, 158, 393, 598, 661
HpyCH4III	ACNGT	2 cut(s)	302, 665
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	9 cut(s)	137, 158, 173, 254, 349, 494, 506, 563, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 191, 260, 647
HpyF3I	CTNAG	5 cut(s)	275, 321, 446, 671, 681
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	5 cut(s)	149, 221, 319, 526, 556
KpnI	GGTACC	2 cut(s)	431, 680
Kzo9I	GATC	3 cut(s)	331, 709, 719
LmnI	GCTCC	2 cut(s)	545, 638
Lsp1109I	GCAGC	5 cut(s)	40, 140, 178, 634, 635
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	4 cut(s)	175, 237, 409, 586
MalI	GATC	3 cut(s)	333, 711, 721
MbiI	CCGCTC	1 cut(s)	425
MboI	GATC	3 cut(s)	331, 709, 719
MfeI	CAATTG	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	23, 160
MluCI	AATT	3 cut(s)	242, 365, 489
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	3 cut(s)	87, 284, 365
MseI	TTAA	1 cut(s)	288
MspI	CCGG	1 cut(s)	591
MunI	CAATTG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	134, 191, 260, 647
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	3 cut(s)	331, 709, 719
NlaIII	CATG	5 cut(s)	149, 221, 319, 526, 556
NlaIV	GGNNCC	4 cut(s)	429, 576, 640, 678
NmuCI	GTSAC	3 cut(s)	237, 409, 586
NspI	RCATGY	2 cut(s)	149, 221
PagI	TCATGA	1 cut(s)	522
PciI	ACATGT	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	556
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	7 cut(s)	55, 127, 130, 193, 200, 625, 649
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PscI	ACATGT	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	530
PspN4I	GGNNCC	4 cut(s)	429, 576, 640, 678
PspPI	GGNCC	2 cut(s)	533, 575
PstI	CTGCAG	1 cut(s)	175
RsaI	GTAC	5 cut(s)	222, 429, 439, 662, 678
RsaNI	GTAC	5 cut(s)	221, 428, 438, 661, 677
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	7 cut(s)	54, 126, 129, 192, 199, 624, 648
Sau3AI	GATC	3 cut(s)	331, 709, 719
Sau96I	GGNCC	2 cut(s)	533, 575
SchI	GAGTC	1 cut(s)	313
SduI	GDGCHC	2 cut(s)	23, 160
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	575
Sse9I	AATT	3 cut(s)	242, 365, 489
SsiI	CCGC	3 cut(s)	126, 199, 425
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	302, 665
TaiI	ACGT	1 cut(s)	380
TasI	AATT	3 cut(s)	242, 365, 489
TatI	WGTACW	2 cut(s)	437, 660
TauI	GCSGC	2 cut(s)	128, 201
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	418, 547
TseFI	GTSAC	3 cut(s)	237, 409, 586
TseI	GCWGC	5 cut(s)	53, 128, 191, 623, 647
Tsp45I	GTSAC	3 cut(s)	237, 409, 586
TspDTI	ATGAA	2 cut(s)	569, 714
TspRI	CASTG	2 cut(s)	418, 547
Van91I	CCANNNNNTGG	1 cut(s)	542
VneI	GTGCAC	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	2 cut(s)	149, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.