Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Reverse (-)

22859956 .. 22861534

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1183500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATGGCGGAGCTTGTGGGCACATACATTCTTATATTTATAGGCTGTGGGGCTGCTCTCGTCAACAAAATACAACCTCTTACAATCGTGGGAATAGTAATCGCATGGGGTCTTGTTTTAATGGCCGCAGCATATGCAGTTGGGCATGTCTCCGGCGTACATTTCAATCCTGCAGTTACTATTGCCTTGGCTGCTGGCCGCAGATTTCCAGTACCTATGTATGTGATGTCACAATTGTCTGGTGCAACATTAGCAAGCTTGACCCTCAAGCTGTTGTTGAACGATCAAGACAGTATTCAAGCAACCATGACTCAATTCTTTGATCCAACAACTTACCTGCAAGCCCTCACTTGGGAATTCGTTATCACGTTTATACTGATGTTCACCATTTGTGGTGTTGTCACTGATGACAGAGCGAAGGCTAAAAAAAGAGTGTTAAATTGTTTTTTCGTTGACAAAGCACTAACCCTATGCTTGACTGATAAAATTAGGGCCAAAATTCTCTCTGGAATTGCAATAGGTGCTGCATTTGTGGTGAATGTCATGATTGCTGGGCCAATCACTGGAACTTCCATGAATCCTACAAGGAGTTTTGGACCGGCTATCGTTACCGGAGTTTATAAGAACATTTGGGTTTATATTGCAGCCCCTATTCCTGGAGCCAGTGGCGGATCCAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012506 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

228

Amino Acids

24.19

Weight (kDa)

9.51

Isoelectric Point (pI)

24.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	2 - 222	5.8e-47	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
Acc36I	ACCTGC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	563
AciI	CCGC	4 cut(s)	8, 126, 199, 669
AclWI	GGATC	3 cut(s)	317, 666, 679
AcoI	YGGCCR	2 cut(s)	123, 196
AcsI	RAATTY	2 cut(s)	356, 498
AfaI	GTAC	2 cut(s)	159, 213
AfiI	CCNNNNNNNGG	4 cut(s)	351, 352, 563, 656
AgsI	TTSAA	3 cut(s)	166, 280, 299
AjnI	CCWGG	2 cut(s)	655, 674
AluBI	AGCT	3 cut(s)	13, 258, 271
AluI	AGCT	3 cut(s)	13, 258, 271
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	3 cut(s)	317, 666, 679
AoxI	GGCC	4 cut(s)	123, 196, 492, 554
ApeKI	GCWGC	5 cut(s)	53, 128, 191, 524, 644
ApoI	RAATTY	2 cut(s)	356, 498
AspS9I	GGNCC	3 cut(s)	492, 554, 596
AsuHPI	GGTGA	2 cut(s)	376, 547
AvaII	GGWCC	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	671
BbvI	GCAGC	5 cut(s)	40, 140, 178, 511, 656
BciT130I	CCWGG	2 cut(s)	657, 676
BcoDI	GTCTC	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	7 cut(s)	54, 126, 129, 192, 199, 525, 645
BlsI	GCNGC	7 cut(s)	55, 127, 130, 193, 200, 526, 646
Bme1390I	CCNGG	2 cut(s)	657, 676
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	3 cut(s)	492, 554, 596
BmiI	GGNNCC	2 cut(s)	661, 673
BmrFI	CCNGG	2 cut(s)	657, 676
BpmI	CTGGAG	1 cut(s)	678
BpuEI	CTTGAG	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	611
Bsc4I	CCNNNNNNNGG	4 cut(s)	351, 352, 563, 656
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	3 cut(s)	209, 568, 663
BseBI	CCWGG	2 cut(s)	657, 676
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	4 cut(s)	351, 352, 563, 656
BseNI	ACTGG	3 cut(s)	209, 568, 663
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	5 cut(s)	40, 140, 178, 511, 656
BseYI	CCCAGC	1 cut(s)	551
BshFI	GGCC	4 cut(s)	125, 198, 494, 556
BsiSI	CCGG	3 cut(s)	153, 599, 612
BslI	CCNNNNNNNGG	4 cut(s)	351, 352, 563, 656
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	4 cut(s)	125, 198, 494, 556
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	283, 322, 671
BspACI	CCGC	4 cut(s)	8, 126, 199, 669
BspANI	GGCC	4 cut(s)	125, 198, 494, 556
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	2 cut(s)	661, 673
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	3 cut(s)	317, 666, 679
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	3 cut(s)	209, 568, 663
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	283, 322, 671
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	657, 676
Bst4CI	ACNGT	1 cut(s)	293
BstAPI	GCANNNNNTGC	2 cut(s)	134, 521
BstC8I	GCNNGC	3 cut(s)	196, 256, 342
BstKTI	GATC	3 cut(s)	286, 325, 674
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	3 cut(s)	283, 322, 671
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 191, 251, 521
BstNI	CCWGG	2 cut(s)	657, 676
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	655, 674
BstSFI	CTRYAG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	5 cut(s)	40, 140, 178, 511, 656
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BsuRI	GGCC	4 cut(s)	125, 198, 494, 556
BtsIMutI	CAGTG	3 cut(s)	402, 561, 670
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	3 cut(s)	196, 256, 342
CciI	TCATGA	1 cut(s)	543
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	3 cut(s)	492, 554, 596
Csp6I	GTAC	2 cut(s)	158, 212
CviAII	CATG	5 cut(s)	105, 146, 307, 544, 574
CviQI	GTAC	2 cut(s)	158, 212
DpnI	GATC	3 cut(s)	285, 324, 673
DpnII	GATC	3 cut(s)	283, 322, 671
EaeI	YGGCCR	2 cut(s)	123, 196
EciI	GGCGGA	2 cut(s)	23, 684
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	655, 674
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	5 cut(s)	108, 149, 310, 547, 577
FatI	CATG	5 cut(s)	104, 145, 306, 543, 573
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	7 cut(s)	54, 126, 129, 192, 199, 525, 645
Fsp4HI	GCNGC	7 cut(s)	54, 126, 129, 192, 199, 525, 645
GluI	GCNGC	7 cut(s)	54, 126, 129, 192, 199, 525, 645
GsaI	CCCAGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	4 cut(s)	125, 198, 494, 556
HapII	CCGG	3 cut(s)	153, 599, 612
Hin1II	CATG	5 cut(s)	108, 149, 310, 547, 577
HincII	GTYRAC	2 cut(s)	64, 454
HindII	GTYRAC	2 cut(s)	64, 454
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	2 cut(s)	310, 577
HpaII	CCGG	3 cut(s)	153, 599, 612
HphI	GGTGA	2 cut(s)	376, 547
Hpy166II	GTNNAC	3 cut(s)	64, 384, 454
Hpy188III	TCNNGA	3 cut(s)	287, 507, 544
Hpy8I	GTNNAC	3 cut(s)	64, 384, 454
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	7 cut(s)	137, 173, 245, 340, 515, 527, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 191, 251, 521
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	5 cut(s)	108, 149, 310, 547, 577
Kzo9I	GATC	3 cut(s)	283, 322, 671
LmnI	GCTCC	2 cut(s)	10, 659
Lsp1109I	GCAGC	5 cut(s)	40, 140, 178, 511, 656
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	4 cut(s)	175, 228, 400, 607
MalI	GATC	3 cut(s)	285, 324, 673
MboI	GATC	3 cut(s)	283, 322, 671
MfeI	CAATTG	1 cut(s)	233
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	7 cut(s)	233, 314, 356, 439, 486, 498, 510
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	3 cut(s)	87, 275, 356
MseI	TTAA	2 cut(s)	119, 437
MspI	CCGG	3 cut(s)	153, 599, 612
MspR9I	CCNGG	2 cut(s)	657, 676
MunI	CAATTG	1 cut(s)	233
MvaI	CCWGG	2 cut(s)	657, 676
MwoI	GCNNNNNNNGC	4 cut(s)	134, 191, 251, 521
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	3 cut(s)	283, 322, 671
NlaIII	CATG	5 cut(s)	108, 149, 310, 547, 577
NlaIV	GGNNCC	2 cut(s)	661, 673
NmuCI	GTSAC	2 cut(s)	228, 400
NspI	RCATGY	1 cut(s)	149
PagI	TCATGA	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	577
PflMI	CCANNNNNTGG	1 cut(s)	563
PfoI	TCCNGGA	2 cut(s)	655, 674
PkrI	GCNGC	7 cut(s)	55, 127, 130, 193, 200, 526, 646
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PsiI	TTATAA	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	655, 674
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	2 cut(s)	655, 674
PspN4I	GGNNCC	2 cut(s)	661, 673
PspPI	GGNCC	3 cut(s)	492, 554, 596
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	671
RsaI	GTAC	2 cut(s)	159, 213
RsaNI	GTAC	2 cut(s)	158, 212
SaqAI	TTAA	2 cut(s)	119, 437
SatI	GCNGC	7 cut(s)	54, 126, 129, 192, 199, 525, 645
Sau3AI	GATC	3 cut(s)	283, 322, 671
Sau96I	GGNCC	3 cut(s)	492, 554, 596
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	657, 676
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	8 cut(s)	15, 79, 217, 260, 273, 339, 371, 523
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	7 cut(s)	233, 314, 356, 439, 486, 498, 510
SsiI	CCGC	4 cut(s)	8, 126, 199, 669
StyD4I	CCNGG	2 cut(s)	655, 674
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	371
TasI	AATT	7 cut(s)	233, 314, 356, 439, 486, 498, 510
TauI	GCSGC	2 cut(s)	128, 201
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	2 cut(s)	119, 437
Tru9I	TTAA	2 cut(s)	119, 437
TscAI	CASTG	3 cut(s)	409, 568, 670
TseFI	GTSAC	2 cut(s)	228, 400
TseI	GCWGC	5 cut(s)	53, 128, 191, 524, 644
Tsp45I	GTSAC	2 cut(s)	228, 400
TspDTI	ATGAA	1 cut(s)	590
TspRI	CASTG	3 cut(s)	409, 568, 670
Van91I	CCANNNNNTGG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	2 cut(s)	356, 498
XceI	RCATGY	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.