Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Forward (+)

47793738 .. 47795499

Gene Structure 1762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1201500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCCGCAGCATATGCAGTTGGGCATGTCTCTGGTGCACATTTCAATCCTGCAGTTACTATTGCCTTGGCTGCTGGCCGCATATTTCCAGTCAAACATGTACCTATGTATGTGATGATGTCACAATTCTCTGGTGCAACATTAGCAAGCCTGACCCTCAGGCTGTTATTTAACGACCAAGACCGTATTCAAGCTACCATGACTCAGTTCTCTGATCCAACAACTTACCTGCAAGCCCTCACTTGGGAATTCGTTATCACGTTTATACTGATGTTCACCATTTGTGGTGTTGTCACTGATGACAGAGCGGACCAAAATCTCTCTGGAATTGCAATAGGTGGTGCGTTTGTGGTGAATGTCATGATTGCTGGGCCAATCACTGGAGCTTCCATGAATCCTGCAAGGAGTTTGGGACCAGCTATCGTCACCGGAGTTTACAAGAACATTTGGGTTTATATTGCAGCCCCTATTCTTGGAGCCATTGCTGCTACTATGGTGTACAGTGTGCTCAGGGTACCTAAGCTGGTAAAATCTGATGAAAAGGCTGATCCAGTAAGATCACAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012506 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

190

Amino Acids

20.18

Weight (kDa)

8.79

Isoelectric Point (pI)

27.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	2 - 167	2.2e-48	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
Acc65I	GGTACC	1 cut(s)	514
AccB1I	GGYRCC	1 cut(s)	514
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	308
AciI	CCGC	3 cut(s)	6, 79, 308
AclWI	GGATC	2 cut(s)	209, 542
AcoI	YGGCCR	2 cut(s)	3, 76
AcsI	RAATTY	1 cut(s)	248
AfaI	GTAC	3 cut(s)	102, 500, 516
AfiI	CCNNNNNNNGG	4 cut(s)	243, 244, 380, 473
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	46, 191
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	4 cut(s)	194, 386, 419, 523
AluI	AGCT	4 cut(s)	194, 386, 419, 523
Alw21I	GWGCWC	2 cut(s)	40, 510
Alw26I	GTCTC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	36
AlwI	GGATC	2 cut(s)	209, 542
AoxI	GGCC	3 cut(s)	3, 76, 371
ApaLI	GTGCAC	1 cut(s)	36
ApeKI	GCWGC	4 cut(s)	8, 71, 461, 485
ApoI	RAATTY	1 cut(s)	248
Asp718I	GGTACC	1 cut(s)	514
AspS9I	GGNCC	3 cut(s)	310, 371, 413
AsuHPI	GGTGA	3 cut(s)	268, 364, 418
AvaII	GGWCC	2 cut(s)	310, 413
AxyI	CCTNAGG	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	514
Bbv12I	GWGCWC	2 cut(s)	40, 510
BbvI	GCAGC	4 cut(s)	20, 58, 472, 473
BcoDI	GTCTC	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	237
BisI	GCNGC	6 cut(s)	6, 9, 72, 79, 462, 486
BlsI	GCNGC	6 cut(s)	7, 10, 73, 80, 463, 487
Bme18I	GGWCC	2 cut(s)	310, 413
BmgT120I	GGNCC	3 cut(s)	310, 371, 413
BmiI	GGNNCC	3 cut(s)	414, 478, 516
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	2 cut(s)	509, 519
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	4 cut(s)	243, 244, 380, 473
Bse1I	ACTGG	3 cut(s)	89, 385, 551
Bse21I	CCTNAGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	4 cut(s)	243, 244, 380, 473
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	3 cut(s)	172, 218, 523
BseNI	ACTGG	3 cut(s)	89, 385, 551
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	4 cut(s)	20, 58, 472, 473
BseYI	CCCAGC	1 cut(s)	368
BshFI	GGCC	3 cut(s)	5, 78, 373
BshNI	GGYRCC	1 cut(s)	514
BsiHKAI	GWGCWC	2 cut(s)	40, 510
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	4 cut(s)	243, 244, 380, 473
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	3 cut(s)	5, 78, 373
Bsp1286I	GDGCHC	2 cut(s)	40, 510
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	3 cut(s)	214, 547, 557
BspACI	CCGC	3 cut(s)	6, 79, 308
BspANI	GGCC	3 cut(s)	5, 78, 373
BspCNI	CTCAG	3 cut(s)	171, 217, 522
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	414, 478, 516
BspMAI	CTGCAG	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	209, 542
BspT107I	GGYRCC	1 cut(s)	514
BsrBI	CCGCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	480
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	3 cut(s)	89, 385, 551
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	3 cut(s)	214, 547, 557
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	185, 503
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	498
BstC8I	GCNNGC	3 cut(s)	76, 148, 234
BstDEI	CTNAG	4 cut(s)	158, 204, 509, 519
BstKTI	GATC	3 cut(s)	217, 550, 560
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	3 cut(s)	214, 547, 557
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 71, 143, 485
BstNSI	RCATGY	2 cut(s)	29, 101
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	4 cut(s)	20, 58, 472, 473
Bsu36I	CCTNAGG	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	5, 78, 373
BtsIMutI	CAGTG	3 cut(s)	294, 378, 508
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	3 cut(s)	76, 148, 234
CciI	TCATGA	1 cut(s)	360
Cfr13I	GGNCC	3 cut(s)	310, 371, 413
Csp6I	GTAC	3 cut(s)	101, 499, 515
CviAII	CATG	5 cut(s)	26, 98, 199, 361, 391
CviQI	GTAC	3 cut(s)	101, 499, 515
DdeI	CTNAG	4 cut(s)	158, 204, 509, 519
DpnI	GATC	3 cut(s)	216, 549, 559
DpnII	GATC	3 cut(s)	214, 547, 557
EaeI	YGGCCR	2 cut(s)	3, 76
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	2 cut(s)	310, 413
Eco81I	CCTNAGG	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	5 cut(s)	29, 101, 202, 364, 394
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	5 cut(s)	25, 97, 198, 360, 390
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	6 cut(s)	6, 9, 72, 79, 462, 486
Fsp4HI	GCNGC	6 cut(s)	6, 9, 72, 79, 462, 486
GluI	GCNGC	6 cut(s)	6, 9, 72, 79, 462, 486
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	5, 78, 373
HapII	CCGG	1 cut(s)	429
Hin1II	CATG	5 cut(s)	29, 101, 202, 364, 394
HinfI	GANTC	2 cut(s)	202, 394
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	3 cut(s)	268, 364, 418
Hpy166II	GTNNAC	4 cut(s)	38, 276, 436, 499
Hpy188I	TCNGA	3 cut(s)	214, 535, 569
Hpy188III	TCNNGA	2 cut(s)	324, 361
Hpy8I	GTNNAC	4 cut(s)	38, 276, 436, 499
HpyCH4III	ACNGT	2 cut(s)	185, 503
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	8 cut(s)	17, 38, 53, 137, 232, 332, 401, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 71, 143, 485
HpyF3I	CTNAG	4 cut(s)	158, 204, 509, 519
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	5 cut(s)	29, 101, 202, 364, 394
KpnI	GGTACC	1 cut(s)	518
Kzo9I	GATC	3 cut(s)	214, 547, 557
LmnI	GCTCC	2 cut(s)	383, 476
Lsp1109I	GCAGC	4 cut(s)	20, 58, 472, 473
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	4 cut(s)	55, 120, 292, 424
MalI	GATC	3 cut(s)	216, 549, 559
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	3 cut(s)	214, 547, 557
MhlI	GDGCHC	2 cut(s)	40, 510
MluCI	AATT	3 cut(s)	125, 248, 327
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	2 cut(s)	167, 248
MseI	TTAA	1 cut(s)	171
MspI	CCGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	14, 71, 143, 485
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	3 cut(s)	214, 547, 557
NlaIII	CATG	5 cut(s)	29, 101, 202, 364, 394
NlaIV	GGNNCC	3 cut(s)	414, 478, 516
NmuCI	GTSAC	3 cut(s)	120, 292, 424
NspI	RCATGY	2 cut(s)	29, 101
PagI	TCATGA	1 cut(s)	360
PciI	ACATGT	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	394
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	6 cut(s)	7, 10, 73, 80, 463, 487
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PscI	ACATGT	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	368
PspN4I	GGNNCC	3 cut(s)	414, 478, 516
PspPI	GGNCC	3 cut(s)	310, 371, 413
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	3 cut(s)	102, 500, 516
RsaNI	GTAC	3 cut(s)	101, 499, 515
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	6 cut(s)	6, 9, 72, 79, 462, 486
Sau3AI	GATC	3 cut(s)	214, 547, 557
Sau96I	GGNCC	3 cut(s)	310, 371, 413
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	2 cut(s)	40, 510
SetI	ASST	9 cut(s)	106, 196, 231, 263, 340, 388, 421, 520, 525
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	2 cut(s)	310, 413
Sse9I	AATT	3 cut(s)	125, 248, 327
SsiI	CCGC	3 cut(s)	6, 79, 308
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	185, 503
TaiI	ACGT	1 cut(s)	263
TasI	AATT	3 cut(s)	125, 248, 327
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	2 cut(s)	8, 81
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	3 cut(s)	301, 385, 508
TseFI	GTSAC	3 cut(s)	120, 292, 424
TseI	GCWGC	4 cut(s)	8, 71, 461, 485
Tsp45I	GTSAC	3 cut(s)	120, 292, 424
TspDTI	ATGAA	2 cut(s)	407, 552
TspRI	CASTG	3 cut(s)	301, 385, 508
Van91I	CCANNNNNTGG	1 cut(s)	380
VneI	GTGCAC	1 cut(s)	36
VpaK11BI	GGWCC	2 cut(s)	310, 413
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	2 cut(s)	29, 101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.