Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012909.1

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Forward (+)

51300 .. 52543

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012909.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgtccgatccacaaattctgacaacattggaagaaggtgccggcagctcgcctccgactaagagcagattttctgggctttgttcatcttctaagattgttcaccttctccaaaagctaattgcagaggtgctgggtacatatttcttgatatttgccgggtgtggttcgatagtggtgaacaagatatatggttcaataacatttccaggggtggctgtcgtctggggcttaaccgctatggtcatgatctattctgttggtcatatctccggcgcccattttaatcccgccgtcacccttacttttgccatctttcgcgattttcctctcaaacaggcatattattacgctaattctttaagcattttgattcttttaggttccatacttgcgagtgggacgttatgcctttgtttcaccgtacatccggatgatttctttggaactgtaccggttggatcatatgttcaatctttggtcattgaaatcattgcctcatttctcttgatgttcgtcatttccggcgttgccacagataatagagccattggccaaatggcaggaattgctataggaatgaccatattagtcgatgtcttcgtttgcgggcctgtatcaggggcgtcgatgaacccagctcggagcattgggcccgcattgattatgaggatctttaagggactctgggtttacattgtaggtccaatcattgggacaatattgggtggatttgcttacaatttgataagacgcaccgacaaaccactccgggaaataacgaagagcgcttccatgtcgatcaagagcgttcccatcctcaagtccatgtccaggaacaccactttcaacagtagaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

287

Amino Acids

30.68

Weight (kDa)

9.36

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	38, 275
AccB7I	CCANNNNNTGG	1 cut(s)	713
AccII	CGCG	1 cut(s)	321
AccIII	TCCGGA	1 cut(s)	430
AciI	CCGC	4 cut(s)	237, 291, 609, 657
AclWI	GGATC	3 cut(s)	2, 469, 680
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	1 cut(s)	15
AcyI	GRCGYC	2 cut(s)	276, 626
AfaI	GTAC	3 cut(s)	139, 426, 453
AfeI	AGCGCT	1 cut(s)	790
AfiI	CCNNNNNNNGG	3 cut(s)	620, 713, 834
AgeI	ACCGGT	1 cut(s)	454
AgsI	TTSAA	4 cut(s)	198, 473, 488, 850
AjnI	CCWGG	2 cut(s)	208, 833
AloI	GAACNNNNNNTCC	2 cut(s)	453, 485
AluBI	AGCT	3 cut(s)	48, 118, 641
AluI	AGCT	3 cut(s)	48, 118, 641
AlwI	GGATC	3 cut(s)	2, 469, 680
Aor13HI	TCCGGA	1 cut(s)	430
Aor51HI	AGCGCT	1 cut(s)	790
AoxI	GGCC	3 cut(s)	553, 611, 653
ApaI	GGGCCC	1 cut(s)	657
ApeKI	GCWGC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	15
AsiGI	ACCGGT	1 cut(s)	454
AspLEI	GCGC	2 cut(s)	278, 791
AspS9I	GGNCC	4 cut(s)	611, 653, 654, 704
AsuC2I	CCSGG	2 cut(s)	160, 773
AsuHPI	GGTGA	4 cut(s)	95, 190, 289, 412
AvaII	GGWCC	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	657
BalI	TGGCCA	1 cut(s)	555
BanI	GGYRCC	2 cut(s)	38, 275
BanII	GRGCYC	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	592
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	2 cut(s)	320, 824
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	2 cut(s)	210, 835
BcnI	CCSGG	2 cut(s)	160, 773
BfmI	CTRYAG	1 cut(s)	573
BfoI	RGCGCY	2 cut(s)	279, 792
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	4 cut(s)	160, 210, 773, 835
Bme18I	GGWCC	1 cut(s)	704
BmgT120I	GGNCC	4 cut(s)	611, 653, 654, 704
BmiI	GGNNCC	4 cut(s)	40, 277, 385, 655
BmrFI	CCNGG	4 cut(s)	160, 210, 773, 835
BpiI	GAAGAC	1 cut(s)	592
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	2 cut(s)	160, 773
BsaHI	GRCGYC	2 cut(s)	276, 626
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	2 cut(s)	430, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	620, 713, 834
Bse118I	RCCGGY	2 cut(s)	41, 454
Bse3DI	GCAATG	1 cut(s)	492
BseAI	TCCGGA	1 cut(s)	430
BseBI	CCWGG	2 cut(s)	210, 835
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	3 cut(s)	427, 439, 816
BseLI	CCNNNNNNNGG	3 cut(s)	620, 713, 834
BseMI	GCAATG	1 cut(s)	492
BseSI	GKGCMC	1 cut(s)	657
BseXI	GCAGC	1 cut(s)	57
BseYI	CCCAGC	2 cut(s)	133, 637
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	3 cut(s)	555, 613, 655
BshNI	GGYRCC	2 cut(s)	38, 275
BshTI	ACCGGT	1 cut(s)	454
BsiSI	CCGG	7 cut(s)	42, 159, 273, 431, 455, 525, 772
BslFI	GGGAC	3 cut(s)	415, 696, 730
BslI	CCNNNNNNNGG	3 cut(s)	620, 713, 834
BsmFI	GGGAC	3 cut(s)	415, 696, 730
BsnI	GGCC	3 cut(s)	555, 613, 655
Bsp120I	GGGCCC	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	657
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	5 cut(s)	7, 249, 461, 672, 801
Bsp68I	TCGCGA	1 cut(s)	321
BspACI	CCGC	4 cut(s)	237, 291, 609, 657
BspANI	GGCC	3 cut(s)	555, 613, 655
BspEI	TCCGGA	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	4 cut(s)	40, 277, 385, 655
BspPI	GGATC	3 cut(s)	2, 469, 680
BspQI	GCTCTTC	1 cut(s)	779
BspT107I	GGYRCC	2 cut(s)	38, 275
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	2 cut(s)	41, 454
BssAI	RCCGGY	2 cut(s)	41, 454
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	5 cut(s)	7, 249, 461, 672, 801
BssNI	GRCGYC	2 cut(s)	276, 626
Bst2UI	CCWGG	2 cut(s)	210, 835
Bst4CI	ACNGT	3 cut(s)	424, 451, 854
Bst6I	CTCTTC	1 cut(s)	779
BstACI	GRCGYC	2 cut(s)	276, 626
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	4 cut(s)	43, 50, 611, 657
BstDEI	CTNAG	2 cut(s)	60, 93
BstENI	CCTNNNNNAGG	1 cut(s)	618
BstF5I	GGATG	3 cut(s)	427, 439, 816
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	2 cut(s)	279, 792
BstHHI	GCGC	2 cut(s)	278, 791
BstKTI	GATC	5 cut(s)	10, 252, 464, 675, 804
BstMBI	GATC	5 cut(s)	7, 249, 461, 672, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstNI	CCWGG	2 cut(s)	210, 835
BstSCI	CCNGG	4 cut(s)	158, 208, 771, 833
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	1 cut(s)	657
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	592
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
BsuRI	GGCC	3 cut(s)	555, 613, 655
BtsCI	GGATG	3 cut(s)	427, 439, 816
BtuMI	TCGCGA	1 cut(s)	321
Cac8I	GCNNGC	4 cut(s)	43, 50, 611, 657
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	2 cut(s)	278, 791
Cfr10I	RCCGGY	2 cut(s)	41, 454
Cfr13I	GGNCC	4 cut(s)	611, 653, 654, 704
CseI	GACGC	2 cut(s)	615, 762
Csp6I	GTAC	3 cut(s)	138, 425, 452
CspAI	ACCGGT	1 cut(s)	454
CviAII	CATG	3 cut(s)	247, 796, 829
CviQI	GTAC	3 cut(s)	138, 425, 452
DdeI	CTNAG	2 cut(s)	60, 93
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	5 cut(s)	9, 251, 463, 674, 803
DpnII	GATC	5 cut(s)	7, 249, 461, 672, 801
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	779
EarI	CTCTTC	1 cut(s)	779
Eco24I	GRGCYC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	704
Eco47III	AGCGCT	1 cut(s)	790
EcoNI	CCTNNNNNAGG	1 cut(s)	618
EcoRII	CCWGG	2 cut(s)	208, 833
EcoT38I	GRGCYC	1 cut(s)	657
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
FaeI	CATG	3 cut(s)	250, 799, 832
FaqI	GGGAC	3 cut(s)	415, 696, 730
FatI	CATG	3 cut(s)	246, 795, 828
FauI	CCCGC	3 cut(s)	298, 602, 664
FauNDI	CATATG	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	3 cut(s)	414, 446, 803
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	1 cut(s)	46
GlaI	GCGC	2 cut(s)	277, 790
GluI	GCNGC	1 cut(s)	46
GsaI	CCCAGC	2 cut(s)	137, 641
HaeII	RGCGCY	2 cut(s)	279, 792
HaeIII	GGCC	3 cut(s)	555, 613, 655
HapII	CCGG	7 cut(s)	42, 159, 273, 431, 455, 525, 772
HgaI	GACGC	2 cut(s)	615, 762
HhaI	GCGC	2 cut(s)	278, 791
Hin1I	GRCGYC	2 cut(s)	276, 626
Hin1II	CATG	3 cut(s)	250, 799, 832
Hin6I	GCGC	2 cut(s)	276, 789
HinP1I	GCGC	2 cut(s)	276, 789
HinfI	GANTC	2 cut(s)	373, 684
HpaII	CCGG	7 cut(s)	42, 159, 273, 431, 455, 525, 772
HphI	GGTGA	4 cut(s)	95, 190, 289, 412
Hpy166II	GTNNAC	3 cut(s)	103, 181, 694
Hpy188I	TCNGA	4 cut(s)	7, 21, 57, 645
Hpy188III	TCNNGA	6 cut(s)	148, 247, 320, 431, 508, 805
Hpy8I	GTNNAC	3 cut(s)	103, 181, 694
Hpy99I	CGWCG	1 cut(s)	631
HpyAV	CCTTC	2 cut(s)	29, 116
HpyCH4III	ACNGT	3 cut(s)	424, 451, 854
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	2 cut(s)	60, 93
HpySE526I	ACGT	1 cut(s)	404
Hsp92I	GRCGYC	2 cut(s)	276, 626
Hsp92II	CATG	3 cut(s)	250, 799, 832
HspAI	GCGC	2 cut(s)	276, 789
KasI	GGCGCC	1 cut(s)	275
Kpn2I	TCCGGA	1 cut(s)	430
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	7, 249, 461, 672, 801
LguI	GCTCTTC	1 cut(s)	779
LmnI	GCTCC	1 cut(s)	645
Lsp1109I	GCAGC	1 cut(s)	57
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	5 cut(s)	9, 251, 463, 674, 803
MboI	GATC	5 cut(s)	7, 249, 461, 672, 801
MboII	GAAGA	4 cut(s)	44, 81, 592, 796
MflI	RGATCY	1 cut(s)	672
MhlI	GDGCHC	1 cut(s)	657
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	5 cut(s)	15, 120, 355, 567, 742
MluNI	TGGCCA	1 cut(s)	555
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	678
MmeI	TCCRAC	2 cut(s)	80, 439
MnlI	CCTC	6 cut(s)	63, 121, 339, 508, 663, 830
Mox20I	TGGCCA	1 cut(s)	555
MroI	TCCGGA	1 cut(s)	430
MroNI	GCCGGC	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	4 cut(s)	233, 285, 362, 678
MslI	CAYNNNNRTG	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	555
MspI	CCGG	7 cut(s)	42, 159, 273, 431, 455, 525, 772
MspR9I	CCNGG	4 cut(s)	160, 210, 773, 835
MvaI	CCWGG	2 cut(s)	210, 835
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	569
NaeI	GCCGGC	1 cut(s)	43
NarI	GGCGCC	1 cut(s)	276
NciI	CCSGG	2 cut(s)	160, 773
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	5 cut(s)	7, 249, 461, 672, 801
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	3 cut(s)	250, 799, 832
NlaIV	GGNNCC	4 cut(s)	40, 277, 385, 655
NmuCI	GTSAC	1 cut(s)	295
NruI	TCGCGA	1 cut(s)	321
PagI	TCATGA	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	779
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	373
PflMI	CCANNNNNTGG	1 cut(s)	713
PfoI	TCCNGGA	2 cut(s)	771, 833
PinAI	ACCGGT	1 cut(s)	454
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	678
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	678
Psp6I	CCWGG	2 cut(s)	208, 833
PspFI	CCCAGC	2 cut(s)	133, 637
PspGI	CCWGG	2 cut(s)	208, 833
PspN4I	GGNNCC	4 cut(s)	40, 277, 385, 655
PspOMI	GGGCCC	1 cut(s)	653
PspPI	GGNCC	4 cut(s)	611, 653, 654, 704
PsuI	RGATCY	1 cut(s)	672
RruI	TCGCGA	1 cut(s)	321
RsaI	GTAC	3 cut(s)	139, 426, 453
RsaNI	GTAC	3 cut(s)	138, 425, 452
RseI	CAYNNNNRTG	1 cut(s)	432
SapI	GCTCTTC	1 cut(s)	779
SaqAI	TTAA	4 cut(s)	233, 285, 362, 678
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	5 cut(s)	7, 249, 461, 672, 801
Sau96I	GGNCC	4 cut(s)	611, 653, 654, 704
SchI	GAGTC	1 cut(s)	678
ScrFI	CCNGG	4 cut(s)	160, 210, 773, 835
SduI	GDGCHC	1 cut(s)	657
SfcI	CTRYAG	1 cut(s)	573
SfoI	GGCGCC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	5 cut(s)	15, 120, 355, 567, 742
SsiI	CCGC	4 cut(s)	237, 291, 609, 657
SspDI	GGCGCC	1 cut(s)	275
SspI	AATATT	1 cut(s)	723
StyD4I	CCNGG	4 cut(s)	158, 208, 771, 833
TaaI	ACNGT	3 cut(s)	424, 451, 854
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	4 cut(s)	170, 594, 629, 800
TasI	AATT	5 cut(s)	15, 120, 355, 567, 742
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	4 cut(s)	233, 285, 362, 678
Tru9I	TTAA	4 cut(s)	233, 285, 362, 678
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	75, 647
Van91I	CCANNNNNTGG	1 cut(s)	713
VpaK11BI	GGWCC	1 cut(s)	704
XagI	CCTNNNNNAGG	1 cut(s)	618
XapI	RAATTY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.