Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006453

Physical Location & Seq

Genomic Coordinates Forward (+)

64322241 .. 64324607

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGCATAGCAATGTTGGGCAGAGTCTCTAGTTGCCATTTGAATCCTGCTGCTTCTATTGCCTTGGCTGCCGATCGCAAATTTCCATACAAACATATGACAGCTGCAACACTAGCAAGCTCGACTCTGAGGCTGTTGTTTCAAGACAATATTAACGTGACAGTGACTCTCTACTCTGATTCAACAACTCACCTACAAGCCCTCGTCTGGGAATTCATAGCCACTTTTATACTGATGTTCACCATTTGTGGTGTAGCCACTGATCACAAAGCGACTATTCAAAAGGAGATCTGTGAGGATTCGACCGTTGGATCGTCGTATAATTTTGTGAGGATGATTCTAAAGACGATCTGGGACGATCCAACCGTTGGATCTTCATATAATTGTGTAAAGATGATTCAAAAGGTGATCCATGAGGATCCGACCGTTGGATCGTCATATAATTTTGTGAGAATGATTCTAAGGGCGATCCGGGACAATCCAACCGTTGGATCTTCGTATAATTTTGAGAGGATGAACCTAAGGGCGATTCGTGAGGAACTGACCGTTGGATCATCGTATAAATCGCTCCTATTCTCGGGGCGCTTGCTGCTACTGCATTGTATAGTGTTTTTCGGGTCTGAGCCAGTGAAATCTGATCCAAATGACAAAACACTTCCACCAGTATGGAGTTCAGTCAGAGACTTTTTTTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012506 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

232

Amino Acids

26.01

Weight (kDa)

8.26

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	1 - 96	2.5e-10	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37810 AT5G37820 AT5G37820
fragaria_vesca	FvH4_4g32440 FvH4_4g32440 FvH4_5g37280
malus_domestica	MD00G1201500.v1.1 MD08G1183500.v1.1 MD13G1025400.v1.1
prunus_persica	Prupe.1G324800_v2.0.a1
pyrus_communis	pycom08g15720
rosa_chinensis	RchiOBHm_Chr4g0441301 RchiOBHm_Chr7g0238841
rosa_laevigata	RLG00000000801 RLG00000006104
rosa_multiflora	Rmu_sc0012909.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382180
rosa_rugosa	Rorug04G0332300 Rorug07G0323800
rosa_samantha	Rh4AG384100 Rh4BG398200 Rh4CG413300 Rh4DG390800 Rh7BG450700
rosa_wichuraiana	Rw4G033150 Rw7G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	368, 488
AcsI	RAATTY	2 cut(s)	80, 212
AfiI	CCNNNNNNNGG	6 cut(s)	207, 208, 368, 428, 488, 577
AgsI	TTSAA	5 cut(s)	43, 143, 183, 281, 401
AjuI	GAANNNNNNNTTGG	2 cut(s)	531, 563
AluBI	AGCT	2 cut(s)	104, 120
AluI	AGCT	2 cut(s)	104, 120
Alw26I	GTCTC	2 cut(s)	31, 675
Ama87I	CYCGRG	1 cut(s)	577
ApeKI	GCWGC	4 cut(s)	50, 68, 104, 589
ApoI	RAATTY	2 cut(s)	80, 212
AspLEI	GCGC	1 cut(s)	585
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	3 cut(s)	182, 232, 418
AvaI	CYCGRG	1 cut(s)	577
AxyI	CCTNAGG	1 cut(s)	521
BamHI	GGATCC	1 cut(s)	418
BbvI	GCAGC	4 cut(s)	37, 55, 91, 576
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	2 cut(s)	31, 675
BfaI	CTAG	2 cut(s)	30, 113
BfoI	RGCGCY	1 cut(s)	586
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	4 cut(s)	51, 69, 105, 590
BlsI	GCNGC	4 cut(s)	52, 70, 106, 591
Bme1390I	CCNGG	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	577
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	6 cut(s)	207, 208, 368, 428, 488, 577
Bse1I	ACTGG	2 cut(s)	626, 662
Bse21I	CCTNAGG	1 cut(s)	521
Bse3DI	GCAATG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	339, 519
BseLI	CCNNNNNNNGG	6 cut(s)	207, 208, 368, 428, 488, 577
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	119, 612
BseNI	ACTGG	2 cut(s)	626, 662
BseXI	GCAGC	4 cut(s)	37, 55, 91, 576
Bsh1285I	CGRYCG	3 cut(s)	76, 306, 426
BsiEI	CGRYCG	3 cut(s)	76, 306, 426
BsiHKCI	CYCGRG	1 cut(s)	577
BsiSI	CCGG	1 cut(s)	472
BslFI	GGGAC	2 cut(s)	368, 488
BslI	CCNNNNNNNGG	6 cut(s)	207, 208, 368, 428, 488, 577
BsmAI	GTCTC	2 cut(s)	31, 675
BsmFI	GGGAC	2 cut(s)	368, 488
BsoBI	CYCGRG	1 cut(s)	577
BspCNI	CTCAG	2 cut(s)	120, 613
BspLI	GGNNCC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	626, 662
BssECI	CCNNGG	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	6 cut(s)	163, 307, 367, 427, 487, 547
BstC8I	GCNNGC	2 cut(s)	118, 587
BstDEI	CTNAG	4 cut(s)	128, 461, 521, 621
BstF5I	GGATG	2 cut(s)	339, 519
BstH2I	RGCGCY	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	585
BstMAI	GTCTC	2 cut(s)	31, 675
BstMCI	CGRYCG	3 cut(s)	76, 306, 426
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 68, 113, 589, 595
BstSCI	CCNGG	1 cut(s)	471
BstV1I	GCAGC	4 cut(s)	37, 55, 91, 576
BstX2I	RGATCY	4 cut(s)	288, 371, 418, 491
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	4 cut(s)	288, 371, 418, 491
Bsu36I	CCTNAGG	1 cut(s)	521
BtsCI	GGATG	2 cut(s)	339, 519
BtsIMutI	CAGTG	3 cut(s)	168, 258, 633
Cac8I	GCNNGC	2 cut(s)	118, 587
CfoI	GCGC	1 cut(s)	585
CviAII	CATG	1 cut(s)	413
CviJI	RGCY	8 cut(s)	68, 104, 120, 133, 200, 221, 257, 625
CviKI_1	RGCY	8 cut(s)	68, 104, 120, 133, 200, 221, 257, 625
DdeI	CTNAG	4 cut(s)	128, 461, 521, 621
Eco130I	CCWWGG	1 cut(s)	63
Eco81I	CCTNAGG	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	577
EcoRI	GAATTC	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	416
FaqI	GGGAC	2 cut(s)	368, 488
FatI	CATG	1 cut(s)	412
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	51, 69, 105, 590
FokI	GGATG	2 cut(s)	346, 526
Fsp4HI	GCNGC	4 cut(s)	51, 69, 105, 590
FspBI	CTAG	2 cut(s)	30, 113
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	4 cut(s)	51, 69, 105, 590
HaeII	RGCGCY	1 cut(s)	586
HapII	CCGG	1 cut(s)	472
HhaI	GCGC	1 cut(s)	585
Hin1II	CATG	1 cut(s)	416
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	3 cut(s)	182, 232, 418
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	6 cut(s)	129, 178, 423, 622, 637, 680
Hpy188III	TCNNGA	2 cut(s)	143, 533
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	1 cut(s)	319
HpyCH4III	ACNGT	6 cut(s)	163, 307, 367, 427, 487, 547
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	107, 598
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 68, 113, 589, 595
HpyF3I	CTNAG	4 cut(s)	128, 461, 521, 621
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	416
HspAI	GCGC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	573
LpnPI	CCDG	6 cut(s)	60, 193, 337, 485, 639, 675
Lsp1109I	GCAGC	4 cut(s)	37, 55, 91, 576
MaeI	CTAG	2 cut(s)	30, 113
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	157, 163
MboII	GAAGA	2 cut(s)	366, 486
MflI	RGATCY	4 cut(s)	288, 371, 418, 491
MluCI	AATT	6 cut(s)	80, 212, 322, 382, 442, 502
MlyI	GAGTC	3 cut(s)	33, 118, 160
MmeI	TCCRAC	8 cut(s)	289, 349, 386, 409, 446, 469, 506, 529
MnlI	CCTC	7 cut(s)	123, 212, 289, 324, 409, 504, 529
MseI	TTAA	2 cut(s)	153, 697
MslI	CAYNNNNRTG	2 cut(s)	11, 664
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	5 cut(s)	59, 68, 113, 589, 595
NciI	CCSGG	1 cut(s)	473
NdeI	CATATG	1 cut(s)	96
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	2 cut(s)	157, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	7 cut(s)	43, 179, 299, 337, 397, 457, 529
PflMI	CCANNNNNTGG	2 cut(s)	368, 488
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	4 cut(s)	52, 70, 106, 591
Ple19I	CGATCG	1 cut(s)	76
PleI	GAGTC	3 cut(s)	32, 118, 160
PpsI	GAGTC	3 cut(s)	32, 118, 160
PspN4I	GGNNCC	1 cut(s)	420
PsuI	RGATCY	4 cut(s)	288, 371, 418, 491
PvuI	CGATCG	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	104
RseI	CAYNNNNRTG	2 cut(s)	11, 664
SaqAI	TTAA	2 cut(s)	153, 697
SatI	GCNGC	4 cut(s)	51, 69, 105, 590
SchI	GAGTC	3 cut(s)	33, 118, 160
ScrFI	CCNGG	1 cut(s)	473
SetI	ASST	6 cut(s)	106, 122, 159, 195, 408, 522
SmiMI	CAYNNNNRTG	2 cut(s)	11, 664
Sse9I	AATT	6 cut(s)	80, 212, 322, 382, 442, 502
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	2 cut(s)	30, 113
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	6 cut(s)	163, 307, 367, 427, 487, 547
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	122, 302
TasI	AATT	6 cut(s)	80, 212, 322, 382, 442, 502
TfiI	GAWTC	7 cut(s)	43, 179, 299, 337, 397, 457, 529
Tru1I	TTAA	2 cut(s)	153, 697
Tru9I	TTAA	2 cut(s)	153, 697
TscAI	CASTG	3 cut(s)	168, 265, 633
TseFI	GTSAC	2 cut(s)	157, 163
TseI	GCWGC	4 cut(s)	50, 68, 104, 589
Tsp45I	GTSAC	2 cut(s)	157, 163
TspDTI	ATGAA	3 cut(s)	205, 366, 530
TspRI	CASTG	3 cut(s)	168, 265, 633
Van91I	CCANNNNNTGG	2 cut(s)	368, 488
XapI	RAATTY	2 cut(s)	80, 212
XspI	CTAG	2 cut(s)	30, 113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.