AT5G42050

cell death domain (InterPro IPR013989), Kelch related (InterPro IPR013089)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011698
Physical Location & Seq
Forward (+)
16815310 .. 16817346
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42050.1

Sequence Viewer

Length: 1050 bp
ATGGAGTATAATAACAACAATCAGCAATCTTTTTGGCAGTTCAGCGACCAGCTGAGAGTTCAGACACCGAATCTAGCGAATCTGTCTCTCAACGACTCGATCTGGAGCACAAACTCTGTCTTCAAAGAGCGTCGAAACTTAGACATAGCCGCCACCACCGACAAGAACAACAACCAGATCGACTATTATCAGAAGAAGACAACTTCCGACAACATCAATTCCAACTGGAACTGGAAGTCTTCTGGTTCAAACAACGACATGGGTTTAGGATTCGGACCTGTGGGTTCAAAATCCACCGTCGATTTAAACCCAATCGACAAATTCAACTCACCGTTCAACGACACGTGGAAATTCAACTCAGTCAACGTTAACGTTAACGGTTACTCACCGTCAAGCGCCGTTAACGGAGATTTCAACAAAGGGGTTTACACGTCGATGAAGAAGTATGGGTACAACGTCAATCTAAAGAACAACAACAAGAACAAAGGAATCGATGAAGATCATCAGATTCAGAAAGGTGGGAAGAAGAACAGAAAGAATCAGCAGAACAATAATAACCAGAGGAACGAAGACGACAAGAACAATGGTTTGGACAAGAGGTTTAAGACTCTTCCTCCAGCAGAAGCTTTGCCAAGAAACGAAACCATTGGTGGTTACATCTTTGTCTGCAACAACGATACCATGGAAGAGAATCTCAAACGCCAGCTTTTCGGATTGCCACCAAGATACAGGGACTCGGTTAGAGCGATAACTCCAGGACTTCCTCTGTTTCTTTACAACTACTCCACTCACCAACTTCATGGAATCTACGAGGCAGCTAGCTTCGGAGGAACAAACATTGAGTTGAATGCTTTTGAAGACAAGAAATGTCCTGGCGAATCTCGTTTCCCTGCTCAGGTGAGGGCCATAACGAGGAAAGTATGTTTGCCACTGGAAGAAGATTCTTTCCGACCCATTTTGCACCACTACGACGGTCCTAAGTTCCGACTCGAACTCAGTGTCCCTGAGGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dev_Cell_Death

Protein Analysis

349

Amino Acids

39.78

Weight (kDa)

8.53

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dev_Cell_Death PF10539 217 - 344 5.9e-40 Development and cell death domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AclI AACGTT 2 cut(s) 366, 372
AcsI RAATTY 2 cut(s) 320, 350
AcvI CACGTG 1 cut(s) 345
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 2 cut(s) 895, 912
AflIII ACRYGT 2 cut(s) 342, 429
AgsI TTSAA 9 cut(s) 124, 249, 288, 325, 337, 355, 415, 847, 857
AjiI CACGTC 1 cut(s) 432
AjnI CCWGG 2 cut(s) 754, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AloI GAACNNNNNNTCC 2 cut(s) 984, 1016
AluBI AGCT 5 cut(s) 52, 626, 706, 818, 822
AluI AGCT 5 cut(s) 52, 626, 706, 818, 822
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 90
AoxI GGCC 1 cut(s) 903
ApeKI GCWGC 1 cut(s) 815
ApoI RAATTY 2 cut(s) 320, 350
ArsI GACNNNNNNTTYG 2 cut(s) 984, 1016
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 3 cut(s) 275, 903, 974
AsuHPI GGTGA 4 cut(s) 321, 378, 782, 910
AsuNHI GCTAGC 1 cut(s) 818
AvaII GGWCC 2 cut(s) 275, 974
AxyI CCTNAGG 1 cut(s) 1005
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
BbrPI CACGTG 1 cut(s) 345
BbsI GAAGAC 5 cut(s) 112, 203, 231, 576, 864
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 827
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 2 cut(s) 756, 873
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 2 cut(s) 74, 819
BfoI RGCGCY 1 cut(s) 399
BisI GCNGC 2 cut(s) 150, 816
BlsI GCNGC 2 cut(s) 151, 817
Bme1390I CCNGG 2 cut(s) 756, 873
Bme18I GGWCC 2 cut(s) 275, 974
BmgBI CACGTC 1 cut(s) 432
BmgT120I GGNCC 3 cut(s) 275, 903, 974
BmrFI CCNGG 2 cut(s) 756, 873
BmtI GCTAGC 1 cut(s) 822
BpiI GAAGAC 5 cut(s) 112, 203, 231, 576, 864
BpmI CTGGAG 3 cut(s) 124, 600, 738
Bpu10I CCTNAGC 1 cut(s) 894
Bsa29I ATCGAT 1 cut(s) 492
BsaAI YACGTR 1 cut(s) 345
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 681
BsaXI ACNNNNNCTCC 4 cut(s) 598, 628, 767, 797
Bsc4I CCNNNNNNNGG 2 cut(s) 895, 912
Bse1I ACTGG 3 cut(s) 230, 236, 936
Bse21I CCTNAGG 1 cut(s) 1005
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 2 cut(s) 756, 873
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 681
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 2 cut(s) 895, 912
BseMII CTCAG 5 cut(s) 44, 372, 908, 996, 1009
BseNI ACTGG 3 cut(s) 230, 236, 936
BseXI GCAGC 1 cut(s) 827
BshFI GGCC 1 cut(s) 905
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 1 cut(s) 110
BslFI GGGAC 2 cut(s) 746, 986
BslI CCNNNNNNNGG 2 cut(s) 895, 912
BsmAI GTCTC 1 cut(s) 90
BsmFI GGGAC 2 cut(s) 746, 986
BsmI GAATGC 1 cut(s) 853
BsnI GGCC 1 cut(s) 905
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 99, 177, 499
Bsp19I CCATGG 1 cut(s) 681
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 905
BspCNI CTCAG 5 cut(s) 45, 371, 907, 997, 1008
BspDI ATCGAT 1 cut(s) 492
BspOI GCTAGC 1 cut(s) 822
BsrI ACTGG 3 cut(s) 230, 236, 936
BssECI CCNNGG 1 cut(s) 681
BssMI GATC 3 cut(s) 99, 177, 499
BssT1I CCWWGG 1 cut(s) 681
Bst2UI CCWGG 2 cut(s) 756, 873
Bst4CI ACNGT 5 cut(s) 298, 333, 380, 390, 974
Bst6I CTCTTC 2 cut(s) 615, 681
BstBAI YACGTR 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 704, 820
BstDEI CTNAG 7 cut(s) 53, 139, 358, 894, 978, 995, 1005
BstDSI CCRYGG 1 cut(s) 681
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 3 cut(s) 102, 180, 502
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 3 cut(s) 99, 177, 499
BstNI CCWGG 2 cut(s) 756, 873
BstSCI CCNGG 2 cut(s) 754, 871
BstV1I GCAGC 1 cut(s) 827
BstV2I GAAGAC 5 cut(s) 112, 203, 231, 576, 864
BstXI CCANNNNNNTGG 1 cut(s) 800
Bsu15I ATCGAT 1 cut(s) 492
Bsu36I CCTNAGG 1 cut(s) 1005
BsuRI GGCC 1 cut(s) 905
BsuTUI ATCGAT 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 681
BtrI CACGTC 1 cut(s) 432
BtsIMutI CAGTG 2 cut(s) 929, 1003
Cac8I GCNNGC 2 cut(s) 704, 820
CfoI GCGC 1 cut(s) 398
Cfr13I GGNCC 3 cut(s) 275, 903, 974
ClaI ATCGAT 1 cut(s) 492
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 451
CviAII CATG 3 cut(s) 259, 682, 800
CviJI RGCY 7 cut(s) 52, 149, 626, 706, 818, 822, 905
CviKI_1 RGCY 7 cut(s) 52, 149, 626, 706, 818, 822, 905
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 7 cut(s) 53, 139, 358, 894, 978, 995, 1005
DpnI GATC 3 cut(s) 101, 179, 501
DpnII GATC 3 cut(s) 99, 177, 499
DraI TTTAAA 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 615, 681
EarI CTCTTC 2 cut(s) 615, 681
Eco130I CCWWGG 1 cut(s) 681
Eco47I GGWCC 2 cut(s) 275, 974
Eco72I CACGTG 1 cut(s) 345
Eco81I CCTNAGG 1 cut(s) 1005
EcoRII CCWGG 2 cut(s) 754, 871
EcoT14I CCWWGG 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 681
FaeI CATG 3 cut(s) 262, 685, 803
FaiI YATR 8 cut(s) 9, 146, 260, 447, 683, 801, 908, 922
FaqI GGGAC 2 cut(s) 746, 986
FatI CATG 3 cut(s) 258, 681, 799
Fnu4HI GCNGC 2 cut(s) 150, 816
Fsp4HI GCNGC 2 cut(s) 150, 816
FspBI CTAG 2 cut(s) 74, 819
GlaI GCGC 1 cut(s) 397
GluI GCNGC 2 cut(s) 150, 816
GsuI CTGGAG 3 cut(s) 124, 600, 738
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 1 cut(s) 905
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 398
Hin1II CATG 3 cut(s) 262, 685, 803
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 4 cut(s) 364, 370, 376, 403
HindII GTYRAC 4 cut(s) 364, 370, 376, 403
HindIII AAGCTT 1 cut(s) 624
HpaI GTTAAC 3 cut(s) 370, 376, 403
HphI GGTGA 4 cut(s) 321, 378, 782, 910
Hpy166II GTNNAC 5 cut(s) 364, 370, 376, 403, 427
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 5 cut(s) 364, 370, 376, 403, 427
Hpy99I CGWCG 4 cut(s) 135, 302, 436, 974
HpyCH4III ACNGT 5 cut(s) 298, 333, 380, 390, 974
HpyCH4IV ACGT 5 cut(s) 344, 366, 372, 431, 456
HpyCH4V TGCA 2 cut(s) 669, 961
HpyF3I CTNAG 7 cut(s) 53, 139, 358, 894, 978, 995, 1005
HpySE526I ACGT 5 cut(s) 344, 366, 372, 431, 456
Hsp92II CATG 3 cut(s) 262, 685, 803
HspAI GCGC 1 cut(s) 396
KspAI GTTAAC 3 cut(s) 370, 376, 403
Kzo9I GATC 3 cut(s) 99, 177, 499
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 1 cut(s) 827
MaeI CTAG 2 cut(s) 74, 819
MaeII ACGT 5 cut(s) 344, 366, 372, 431, 456
MaeIII GTNAC 2 cut(s) 380, 653
MalI GATC 3 cut(s) 101, 179, 501
MboI GATC 3 cut(s) 99, 177, 499
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 3 cut(s) 217, 320, 350
MlyI GAGTC 4 cut(s) 89, 601, 728, 981
MmeI TCCRAC 4 cut(s) 231, 246, 973, 1009
MnlI CCTC 9 cut(s) 555, 591, 624, 774, 805, 821, 894, 906, 1000
MseI TTAA 5 cut(s) 305, 369, 375, 402, 603
MslI CAYNNNNRTG 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 52
MspR9I CCNGG 2 cut(s) 756, 873
Mva1269I GAATGC 1 cut(s) 853
MvaI CCWGG 2 cut(s) 756, 873
NcoI CCATGG 1 cut(s) 681
NdeII GATC 3 cut(s) 99, 177, 499
NheI GCTAGC 1 cut(s) 818
NlaIII CATG 3 cut(s) 262, 685, 803
PcsI WCGNNNNNNNCGW 1 cut(s) 743
PctI GAATGC 1 cut(s) 853
PfoI TCCNGGA 1 cut(s) 754
PkrI GCNGC 2 cut(s) 151, 817
PleI GAGTC 4 cut(s) 89, 601, 728, 981
PmaCI CACGTG 1 cut(s) 345
PmlI CACGTG 1 cut(s) 345
PpsI GAGTC 4 cut(s) 89, 601, 728, 981
Ppu21I YACGTR 1 cut(s) 345
Psp1406I AACGTT 2 cut(s) 366, 372
Psp6I CCWGG 2 cut(s) 754, 871
PspCI CACGTG 1 cut(s) 345
PspGI CCWGG 2 cut(s) 754, 871
PspPI GGNCC 3 cut(s) 275, 903, 974
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 5 cut(s) 305, 369, 375, 402, 603
SatI GCNGC 2 cut(s) 150, 816
Sau3AI GATC 3 cut(s) 99, 177, 499
Sau96I GGNCC 3 cut(s) 275, 903, 974
SchI GAGTC 4 cut(s) 89, 601, 728, 981
ScrFI CCNGG 2 cut(s) 756, 873
SduI GDGCHC 1 cut(s) 110
SinI GGWCC 2 cut(s) 275, 974
SmiMI CAYNNNNRTG 1 cut(s) 434
Sse9I AATT 3 cut(s) 217, 320, 350
SsiI CCGC 1 cut(s) 150
SspMI CTAG 2 cut(s) 74, 819
StyD4I CCNGG 2 cut(s) 754, 871
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 5 cut(s) 298, 333, 380, 390, 974
TaiI ACGT 5 cut(s) 347, 369, 375, 434, 459
TaqI TCGA 8 cut(s) 98, 133, 180, 300, 315, 434, 492, 990
TasI AATT 3 cut(s) 217, 320, 350
TauI GCSGC 1 cut(s) 152
Tru1I TTAA 5 cut(s) 305, 369, 375, 402, 603
Tru9I TTAA 5 cut(s) 305, 369, 375, 402, 603
TscAI CASTG 2 cut(s) 936, 1003
TseI GCWGC 1 cut(s) 815
TspDTI ATGAA 3 cut(s) 452, 510, 788
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 2 cut(s) 936, 1003
VpaK11BI GGWCC 2 cut(s) 275, 974
XapI RAATTY 2 cut(s) 320, 350
XspI CTAG 2 cut(s) 74, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.