Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011698

Physical Location & Seq

Genomic Coordinates Forward (+)

11804529 .. 11807116

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG144900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAGAACAACAACAACCAATCCTTCTGGCAATTCAGCGACCAGCTTCGTGTCCAGACATCCAATCTCGCCAACCTTTCCGTCAACGACTCGATCTGGAGCAGCTCATACGGCAGCAAGAGGCCTGATGCGAGGAGGAACTTCGACATCAAGGTCGGCGGTGAGGTGAATTCTTTGATTAATTTGACCCCAAAAGGGTCTGATTTCAATGGCTTCAATGATGGATTGGACTACAAGCAGAAAGGGTCCGACCCGAATGAGGGCTGGAACAGCTTCAAGCCCAAGGCTTCTGAATTCAGCGACAGGTTTAACAAAGCTTCAGACTTCAATTCTTTCAACCCAAAAGTTTCAGACTTCAATTCTTTCAACCCAAAAGCTTCAGACTTCAATTCTTTCAACCCAAAAGTTTCAGACTTTAATGGGTTTAATCAGAAGGTCCCGGACTTCAATGGGTTTAATCAGAAGGTCCCGGACTTCAATGGATTCAACCAGAAGGTTCCGGATTTTAATGGGTTTAATGAAGGGTGGAAACTCGGGGCTTCTGCTAATGGTGGCATCAATGGAGGCTTCAACAAGGGAATTTACTCCAAGCCTGCAATTCACAACAATAACATTAACCTGAACCTGAAGCCGTACAAGAACCAGGGTGAGGAGTTTGATCTTGGAGTTAAAGCTGGGAAGAAGAACAACAATAGCAACAAGAAGAAAAATGGTGATGACAATAACAAGGACGTCAAGGGTGACAAGAAATTCAAGACACTTCCACCCTCTGAGTCTCTCCCCAGAAATGAAACCATTGGTGGTTACATCTTCGTCTGCAACAATGATACCATGCAAGAGAATCTCAAGAGGCAGCTTTTTGGTATGTTCCTAATTCTTTTCCTTAATTGTGTTTGTATTCCATTATATTTCTCTTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

307

Amino Acids

34.48

Weight (kDa)

9.02

Isoelectric Point (pI)

20.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42050
fragaria_vesca	FvH4_5g04970
malus_domestica	MD06G1110600.v1.1 MD14G1131300.v1.1
prunus_persica	Prupe.5G123200_v2.0.a1 Prupe.5G123200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194091
rosa_laevigata	RLG00000004218
rosa_multiflora	Rmu_co8036242.1_g000001 Rmu_co8391571.1_g000001 Rmu_sc0003468.1_g000005 Rmu_sc0009433.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261560
rosa_rugosa	Rorug07G0013700
rosa_samantha	Rh7AG140800 Rh7BG141500 Rh7CG144900 Rh7DG142300
rosa_wichuraiana	Rw7G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AatII	GACGTC	1 cut(s)	735
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	1 cut(s)	159
AcsI	RAATTY	4 cut(s)	169, 293, 579, 749
AcuI	CTGAAG	3 cut(s)	303, 363, 647
AcyI	GRCGYC	1 cut(s)	732
AfaI	GTAC	1 cut(s)	635
AfiI	CCNNNNNNNGG	4 cut(s)	195, 259, 260, 649
AjnI	CCWGG	1 cut(s)	642
AluBI	AGCT	7 cut(s)	46, 105, 273, 317, 377, 674, 856
AluI	AGCT	7 cut(s)	46, 105, 273, 317, 377, 674, 856
Alw26I	GTCTC	1 cut(s)	780
Ama87I	CYCGRG	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	102, 114, 853
ApoI	RAATTY	4 cut(s)	169, 293, 579, 749
AseI	ATTAAT	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	272
AspS9I	GGNCC	3 cut(s)	246, 436, 466
AsuC2I	CCSGG	2 cut(s)	440, 470
AsuHPI	GGTGA	5 cut(s)	173, 178, 659, 725, 752
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	3 cut(s)	246, 436, 466
BbvI	GCAGC	3 cut(s)	114, 126, 865
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	2 cut(s)	127, 616
BciT130I	CCWGG	1 cut(s)	644
BcnI	CCSGG	2 cut(s)	440, 470
BcoDI	GTCTC	1 cut(s)	780
BisI	GCNGC	3 cut(s)	103, 115, 854
BlsI	GCNGC	3 cut(s)	104, 116, 855
Bme1390I	CCNGG	3 cut(s)	440, 470, 644
Bme18I	GGWCC	3 cut(s)	246, 436, 466
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	3 cut(s)	246, 436, 466
BmiI	GGNNCC	4 cut(s)	247, 438, 468, 498
BmrFI	CCNGG	3 cut(s)	440, 470, 644
BmsI	GCATC	2 cut(s)	118, 564
BpmI	CTGGAG	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	830
BpuMI	CCSGG	2 cut(s)	440, 470
BsaHI	GRCGYC	1 cut(s)	732
BsaJI	CCNNGG	2 cut(s)	282, 643
BsaWI	WCCGGW	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 259, 260, 649
BseAI	TCCGGA	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	644
BseDI	CCNNGG	2 cut(s)	282, 643
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	4 cut(s)	195, 259, 260, 649
BseMII	CTCAG	1 cut(s)	762
BseRI	GAGGAG	2 cut(s)	148, 665
BseXI	GCAGC	3 cut(s)	114, 126, 865
BseYI	CCCAGC	1 cut(s)	674
BshFI	GGCC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	3 cut(s)	440, 470, 500
BslFI	GGGAC	2 cut(s)	422, 452
BslI	CCNNNNNNNGG	4 cut(s)	195, 259, 260, 649
BsmAI	GTCTC	1 cut(s)	780
BsmFI	GGGAC	2 cut(s)	422, 452
BsnI	GGCC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	533
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	2 cut(s)	93, 658
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	763
BspEI	TCCGGA	1 cut(s)	499
BspLI	GGNNCC	4 cut(s)	247, 438, 468, 498
BssECI	CCNNGG	2 cut(s)	282, 643
BssMI	GATC	2 cut(s)	93, 658
BssNI	GRCGYC	1 cut(s)	732
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	644
BstACI	GRCGYC	1 cut(s)	732
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	1 cut(s)	771
BstF5I	GGATG	1 cut(s)	59
BstKTI	GATC	2 cut(s)	96, 661
BstMAI	GTCTC	1 cut(s)	780
BstMBI	GATC	2 cut(s)	93, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 270
BstNI	CCWGG	1 cut(s)	644
BstSCI	CCNGG	3 cut(s)	438, 468, 642
BstV1I	GCAGC	3 cut(s)	114, 126, 865
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	594
Cfr13I	GGNCC	3 cut(s)	246, 436, 466
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	1 cut(s)	832
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	2 cut(s)	95, 660
DpnII	GATC	2 cut(s)	93, 658
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	124
Eco47I	GGWCC	3 cut(s)	246, 436, 466
Eco57I	CTGAAG	3 cut(s)	303, 363, 647
Eco88I	CYCGRG	1 cut(s)	533
EcoO109I	RGGNCCY	2 cut(s)	436, 466
EcoRI	GAATTC	2 cut(s)	169, 293
EcoRII	CCWGG	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	835
FaiI	YATR	4 cut(s)	109, 833, 866, 907
FaqI	GGGAC	2 cut(s)	422, 452
FatI	CATG	1 cut(s)	831
Fnu4HI	GCNGC	3 cut(s)	103, 115, 854
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	103, 115, 854
GluI	GCNGC	3 cut(s)	103, 115, 854
GsaI	CCCAGC	1 cut(s)	678
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	3 cut(s)	440, 470, 500
Hin1I	GRCGYC	1 cut(s)	732
Hin1II	CATG	1 cut(s)	835
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	2 cut(s)	315, 375
HinfI	GANTC	4 cut(s)	89, 483, 773, 841
HpaII	CCGG	3 cut(s)	440, 470, 500
HphI	GGTGA	5 cut(s)	173, 178, 659, 725, 752
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	5 cut(s)	55, 97, 500, 754, 847
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	5 cut(s)	34, 427, 457, 487, 515
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	3 cut(s)	596, 819, 835
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 270
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	1 cut(s)	732
Hsp92I	GRCGYC	1 cut(s)	732
Hsp92II	CATG	1 cut(s)	835
Kpn2I	TCCGGA	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	93, 658
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	3 cut(s)	114, 126, 865
LweI	GCATC	2 cut(s)	118, 564
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	2 cut(s)	740, 803
MalI	GATC	2 cut(s)	95, 660
MboI	GATC	2 cut(s)	93, 658
MboII	GAAGA	4 cut(s)	691, 694, 715, 802
MlyI	GAGTC	2 cut(s)	83, 782
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	9 cut(s)	114, 126, 129, 157, 253, 557, 643, 778, 843
MroI	TCCGGA	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	272
MspI	CCGG	3 cut(s)	440, 470, 500
MspR9I	CCNGG	3 cut(s)	440, 470, 644
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	2 cut(s)	111, 270
NciI	CCSGG	2 cut(s)	440, 470
NdeII	GATC	2 cut(s)	93, 658
NlaIII	CATG	1 cut(s)	835
NlaIV	GGNNCC	4 cut(s)	247, 438, 468, 498
NmuCI	GTSAC	1 cut(s)	740
PceI	AGGCCT	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	483, 841
PfoI	TCCNGGA	2 cut(s)	438, 468
PkrI	GCNGC	3 cut(s)	104, 116, 855
PleI	GAGTC	2 cut(s)	83, 781
PpsI	GAGTC	2 cut(s)	83, 781
PpuMI	RGGWCCY	2 cut(s)	436, 466
PshBI	ATTAAT	1 cut(s)	180
Psp5II	RGGWCCY	2 cut(s)	436, 466
Psp6I	CCWGG	1 cut(s)	642
PspFI	CCCAGC	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	4 cut(s)	247, 438, 468, 498
PspPI	GGNCC	3 cut(s)	246, 436, 466
PspPPI	RGGWCCY	2 cut(s)	436, 466
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
SatI	GCNGC	3 cut(s)	103, 115, 854
Sau3AI	GATC	2 cut(s)	93, 658
Sau96I	GGNCC	3 cut(s)	246, 436, 466
SchI	GAGTC	2 cut(s)	83, 782
ScrFI	CCNGG	3 cut(s)	440, 470, 644
SfaNI	GCATC	2 cut(s)	118, 564
SinI	GGWCC	3 cut(s)	246, 436, 466
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	3 cut(s)	438, 468, 642
StyI	CCWWGG	1 cut(s)	282
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	2 cut(s)	92, 144
TfiI	GAWTC	2 cut(s)	483, 841
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	3 cut(s)	102, 114, 853
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	2 cut(s)	534, 804
TspGWI	ACGGA	1 cut(s)	70
VpaK11BI	GGWCC	3 cut(s)	246, 436, 466
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	4 cut(s)	169, 293, 579, 749
XmnI	GAANNNNTTC	1 cut(s)	272
ZraI	GACGTC	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.