Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009433.1

Orthogroup ID

OG0011698

Physical Location & Seq

Genomic Coordinates Forward (+)

17446 .. 19710

Gene Structure 2265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009433.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

atggagaacaacaacaaccaatccttctggcaattcagcgaccagcttcgtgtccagacatccaatctcgccaacctttccgtcaacgactcgatctggagcagctcatacggcagcaagaggcctgatgcgaggaggaacttcgacatcaaggtcggcggtgaggtgaattctttgattaatttgaccccaaaagggtctgatttcaatggcttcaatgaaggattggactacaagcagaaagggtccgacccgaatgagggctggaacagcttcaagcccaaggcttctgaattcagcgacaggtttaacaaagcttcagacttcaattctttcaacccaaaagtttcagacttcaattctttcaacccaaaagcttcagacttcaattctttcaacccaaaagtttcagacttcaattctttcaacccaaaagcttcagacttcaattctttcaacccaaaagtttcagacttcaattctttcaacccaaaagcttcagacttcaattctttcaacccaaaagtttcagacttcaattctttcaacccaaaagcttcagacttcaattctttcaacccaaaagtttcagacttcaattctttcaacccaaaagcttcagacttcaattctttcaacccaaaagtttcagacttcaattctttcaacccaaaagcttcagacttcaattctttcaacccaaaagtttcagacttcaattctttcaacccaaaagcttcagacttcaattctttcaacccaaaagtttcagacttcaattctttcaacccaaaagcttcagacttcaattctttcaacccaaaagtttcagacttcaattctttcaacccaaaagcttcagacttcaattctttcaacccaaaagtttcagactttaatgggtttaaccagaaagtcccggacttcaatgggtttaatcagaaggtcccggacttcaatggattcaaccagaaggttccggattttaacgggtttaatgaagggtggaaactcggggcttctgctaatggtggcatcaatggaggcttcaacaagggaatttactccaagcctgcaattcacaacaataacattaacctgaacctgaagccgtacaagaaccagggtgaggagtttgatcttggagttaaagctgggaagaagaacaacaatagcaacaagaagaaaaatggtgatgacaataacaaggacgtcaagggtgacaagaaattcaagacacttccaccctctgagtctctccccagaaatgaaaccattggtggttacatcttcgtctgcaacaatgataccatgcaagagaatctcaagaggcagctttttggtttgcctccacgttaccgtgactcagttcgggccattactccagggttgccccttttcctttacaactactccacccaccaactccatggaatttttgaggctgcaagctttggaggaaccaactttgatccatctgcttgggaagacaagaaatgccctggtgaatcgcgcttccctgctcaggtgaaagttctaactaggaaagtctgtgaaccactggaagaggattccttcaggccaattcttcatcactacgatggccctaaattccgtcttgaactcagcgtgccagaggccctctctctgttggatatatttgcagaccaagatgatatatttgtaactgaaaccccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

566

Amino Acids

63.6

Weight (kDa)

6.98

Isoelectric Point (pI)

17.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42050
fragaria_vesca	FvH4_5g04970
malus_domestica	MD06G1110600.v1.1 MD14G1131300.v1.1
prunus_persica	Prupe.5G123200_v2.0.a1 Prupe.5G123200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194091
rosa_laevigata	RLG00000004218
rosa_multiflora	Rmu_co8036242.1_g000001 Rmu_co8391571.1_g000001 Rmu_sc0003468.1_g000005 Rmu_sc0009433.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261560
rosa_rugosa	Rorug07G0013700
rosa_samantha	Rh7AG140800 Rh7BG141500 Rh7CG144900 Rh7DG142300
rosa_wichuraiana	Rw7G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AatII	GACGTC	1 cut(s)	1215
AccII	CGCG	1 cut(s)	1513
AccIII	TCCGGA	1 cut(s)	979
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	1 cut(s)	1466
AcsI	RAATTY	6 cut(s)	169, 293, 1059, 1229, 1434, 1610
AcyI	GRCGYC	1 cut(s)	1212
AfaI	GTAC	1 cut(s)	1115
AfiI	CCNNNNNNNGG	5 cut(s)	195, 259, 260, 1129, 1525
AjnI	CCWGG	3 cut(s)	1122, 1384, 1501
Alw26I	GTCTC	1 cut(s)	1260
AlwI	GGATC	1 cut(s)	1466
Ama87I	CYCGRG	1 cut(s)	1013
Aor13HI	TCCGGA	1 cut(s)	979
AoxI	GGCC	5 cut(s)	122, 1374, 1580, 1603, 1638
ApeKI	GCWGC	4 cut(s)	102, 114, 1333, 1445
ApoI	RAATTY	6 cut(s)	169, 293, 1059, 1229, 1434, 1610
AseI	ATTAAT	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	1515
AspS9I	GGNCC	5 cut(s)	246, 946, 1374, 1604, 1639
AsuC2I	CCSGG	2 cut(s)	920, 950
AsuHPI	GGTGA	7 cut(s)	173, 178, 1139, 1205, 1232, 1517, 1540
AvaI	CYCGRG	1 cut(s)	1013
AvaII	GGWCC	2 cut(s)	246, 946
BbsI	GAAGAC	1 cut(s)	1494
BbvI	GCAGC	4 cut(s)	114, 126, 1345, 1432
BccI	CCATC	2 cut(s)	1483, 1595
BceAI	ACGGC	2 cut(s)	127, 1096
BciT130I	CCWGG	3 cut(s)	1124, 1386, 1503
BcnI	CCSGG	2 cut(s)	920, 950
BcoDI	GTCTC	1 cut(s)	1260
BfaI	CTAG	1 cut(s)	1542
BisI	GCNGC	4 cut(s)	103, 115, 1334, 1446
BlsI	GCNGC	4 cut(s)	104, 116, 1335, 1447
Bme1390I	CCNGG	5 cut(s)	920, 950, 1124, 1386, 1503
Bme18I	GGWCC	2 cut(s)	246, 946
BmeT110I	CYCGRG	1 cut(s)	1013
BmgT120I	GGNCC	5 cut(s)	246, 946, 1374, 1604, 1639
BmiI	GGNNCC	4 cut(s)	247, 948, 978, 1462
BmrFI	CCNGG	5 cut(s)	920, 950, 1124, 1386, 1503
BmsI	GCATC	2 cut(s)	118, 1044
BpiI	GAAGAC	1 cut(s)	1494
BplI	GAGNNNNNCTC	2 cut(s)	1628, 1660
BpmI	CTGGAG	2 cut(s)	118, 1368
Bpu10I	CCTNAGC	1 cut(s)	1524
BpuEI	CTTGAG	1 cut(s)	1310
BpuMI	CCSGG	2 cut(s)	920, 950
BsaHI	GRCGYC	1 cut(s)	1212
BsaJI	CCNNGG	5 cut(s)	282, 1123, 1385, 1429, 1501
BsaWI	WCCGGW	1 cut(s)	979
BsaXI	ACNNNNNCTCC	2 cut(s)	1397, 1427
Bsc4I	CCNNNNNNNGG	5 cut(s)	195, 259, 260, 1129, 1525
Bse1I	ACTGG	1 cut(s)	1566
BseAI	TCCGGA	1 cut(s)	979
BseBI	CCWGG	3 cut(s)	1124, 1386, 1503
BseDI	CCNNGG	5 cut(s)	282, 1123, 1385, 1429, 1501
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	5 cut(s)	195, 259, 260, 1129, 1525
BseMII	CTCAG	4 cut(s)	1242, 1380, 1538, 1639
BseNI	ACTGG	1 cut(s)	1566
BseRI	GAGGAG	2 cut(s)	148, 1145
BseXI	GCAGC	4 cut(s)	114, 126, 1345, 1432
BseYI	CCCAGC	1 cut(s)	1154
Bsh1236I	CGCG	1 cut(s)	1513
BshFI	GGCC	5 cut(s)	124, 1376, 1582, 1605, 1640
BsiHKCI	CYCGRG	1 cut(s)	1013
BsiSI	CCGG	3 cut(s)	920, 950, 980
BslFI	GGGAC	2 cut(s)	902, 932
BslI	CCNNNNNNNGG	5 cut(s)	195, 259, 260, 1129, 1525
BsmAI	GTCTC	1 cut(s)	1260
BsmFI	GGGAC	2 cut(s)	902, 932
BsnI	GGCC	5 cut(s)	124, 1376, 1582, 1605, 1640
BsoBI	CYCGRG	1 cut(s)	1013
Bsp13I	TCCGGA	1 cut(s)	979
Bsp143I	GATC	3 cut(s)	93, 1138, 1471
Bsp19I	CCATGG	1 cut(s)	1429
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	5 cut(s)	124, 1376, 1582, 1605, 1640
BspCNI	CTCAG	4 cut(s)	1243, 1379, 1537, 1638
BspEI	TCCGGA	1 cut(s)	979
BspFNI	CGCG	1 cut(s)	1513
BspLI	GGNNCC	4 cut(s)	247, 948, 978, 1462
BspPI	GGATC	1 cut(s)	1466
BsrI	ACTGG	1 cut(s)	1566
BssECI	CCNNGG	5 cut(s)	282, 1123, 1385, 1429, 1501
BssMI	GATC	3 cut(s)	93, 1138, 1471
BssNI	GRCGYC	1 cut(s)	1212
BssT1I	CCWWGG	2 cut(s)	282, 1429
Bst2UI	CCWGG	3 cut(s)	1124, 1386, 1503
Bst4CI	ACNGT	1 cut(s)	1361
Bst6I	CTCTTC	1 cut(s)	1560
BstACI	GRCGYC	1 cut(s)	1212
BstC8I	GCNNGC	3 cut(s)	1074, 1450, 1631
BstDEI	CTNAG	4 cut(s)	1251, 1366, 1524, 1625
BstDSI	CCRYGG	1 cut(s)	1429
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	1513
BstHHI	GCGC	1 cut(s)	1515
BstKTI	GATC	3 cut(s)	96, 1141, 1474
BstMAI	GTCTC	1 cut(s)	1260
BstMBI	GATC	3 cut(s)	93, 1138, 1471
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 270
BstNI	CCWGG	3 cut(s)	1124, 1386, 1503
BstSCI	CCNGG	5 cut(s)	918, 948, 1122, 1384, 1501
BstUI	CGCG	1 cut(s)	1513
BstV1I	GCAGC	4 cut(s)	114, 126, 1345, 1432
BstV2I	GAAGAC	1 cut(s)	1494
BstXI	CCANNNNNNTGG	2 cut(s)	1430, 1482
BsuRI	GGCC	5 cut(s)	124, 1376, 1582, 1605, 1640
BtgI	CCRYGG	1 cut(s)	1429
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	1559
Cac8I	GCNNGC	3 cut(s)	1074, 1450, 1631
CfoI	GCGC	1 cut(s)	1515
Cfr13I	GGNCC	5 cut(s)	246, 946, 1374, 1604, 1639
Csp6I	GTAC	1 cut(s)	1114
CviAII	CATG	2 cut(s)	1312, 1430
CviQI	GTAC	1 cut(s)	1114
DdeI	CTNAG	4 cut(s)	1251, 1366, 1524, 1625
DpnI	GATC	3 cut(s)	95, 1140, 1473
DpnII	GATC	3 cut(s)	93, 1138, 1471
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	1560
EarI	CTCTTC	1 cut(s)	1560
Eco130I	CCWWGG	2 cut(s)	282, 1429
Eco147I	AGGCCT	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	246, 946
Eco88I	CYCGRG	1 cut(s)	1013
EcoO109I	RGGNCCY	2 cut(s)	946, 1639
EcoRI	GAATTC	2 cut(s)	169, 293
EcoRII	CCWGG	3 cut(s)	1122, 1384, 1501
EcoT14I	CCWWGG	2 cut(s)	282, 1429
ErhI	CCWWGG	2 cut(s)	282, 1429
FaeI	CATG	2 cut(s)	1315, 1433
FaiI	YATR	5 cut(s)	109, 1313, 1431, 1658, 1679
FaqI	GGGAC	2 cut(s)	902, 932
FatI	CATG	2 cut(s)	1311, 1429
Fnu4HI	GCNGC	4 cut(s)	103, 115, 1334, 1446
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	103, 115, 1334, 1446
FspBI	CTAG	1 cut(s)	1542
GlaI	GCGC	1 cut(s)	1514
GluI	GCNGC	4 cut(s)	103, 115, 1334, 1446
GsaI	CCCAGC	1 cut(s)	1158
GsuI	CTGGAG	2 cut(s)	118, 1368
HaeIII	GGCC	5 cut(s)	124, 1376, 1582, 1605, 1640
HapII	CCGG	3 cut(s)	920, 950, 980
HhaI	GCGC	1 cut(s)	1515
Hin1I	GRCGYC	1 cut(s)	1212
Hin1II	CATG	2 cut(s)	1315, 1433
Hin6I	GCGC	1 cut(s)	1513
HinP1I	GCGC	1 cut(s)	1513
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	7 cut(s)	89, 963, 1253, 1321, 1364, 1508, 1571
HpaII	CCGG	3 cut(s)	920, 950, 980
HphI	GGTGA	7 cut(s)	173, 178, 1139, 1205, 1232, 1517, 1540
Hpy166II	GTNNAC	2 cut(s)	85, 1556
Hpy188III	TCNNGA	6 cut(s)	55, 97, 980, 1234, 1327, 1619
Hpy8I	GTNNAC	2 cut(s)	85, 1556
HpyAV	CCTTC	6 cut(s)	34, 215, 937, 967, 995, 1585
HpyCH4III	ACNGT	1 cut(s)	1361
HpyCH4IV	ACGT	2 cut(s)	1212, 1354
HpyCH4V	TGCA	5 cut(s)	1076, 1299, 1315, 1448, 1664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 270
HpyF3I	CTNAG	4 cut(s)	1251, 1366, 1524, 1625
HpySE526I	ACGT	2 cut(s)	1212, 1354
Hsp92I	GRCGYC	1 cut(s)	1212
Hsp92II	CATG	2 cut(s)	1315, 1433
HspAI	GCGC	1 cut(s)	1513
Kpn2I	TCCGGA	1 cut(s)	979
Kzo9I	GATC	3 cut(s)	93, 1138, 1471
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	4 cut(s)	114, 126, 1345, 1432
LweI	GCATC	2 cut(s)	118, 1044
MaeI	CTAG	1 cut(s)	1542
MaeII	ACGT	2 cut(s)	1212, 1354
MaeIII	GTNAC	5 cut(s)	1220, 1283, 1355, 1361, 1684
MalI	GATC	3 cut(s)	95, 1140, 1473
MboI	GATC	3 cut(s)	93, 1138, 1471
MboII	GAAGA	7 cut(s)	1171, 1174, 1195, 1282, 1499, 1577, 1580
MlyI	GAGTC	3 cut(s)	83, 1262, 1358
MmeI	TCCRAC	2 cut(s)	273, 1632
MroI	TCCGGA	1 cut(s)	979
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	9 cut(s)	180, 309, 897, 906, 936, 987, 996, 1095, 1149
MslI	CAYNNNNRTG	1 cut(s)	1599
MspI	CCGG	3 cut(s)	920, 950, 980
MspR9I	CCNGG	5 cut(s)	920, 950, 1124, 1386, 1503
MvaI	CCWGG	3 cut(s)	1124, 1386, 1503
MvnI	CGCG	1 cut(s)	1513
MwoI	GCNNNNNNNGC	2 cut(s)	111, 270
NciI	CCSGG	2 cut(s)	920, 950
NcoI	CCATGG	1 cut(s)	1429
NdeII	GATC	3 cut(s)	93, 1138, 1471
NlaIII	CATG	2 cut(s)	1315, 1433
NlaIV	GGNNCC	4 cut(s)	247, 948, 978, 1462
NmuCI	GTSAC	2 cut(s)	1220, 1361
PceI	AGGCCT	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	4 cut(s)	963, 1321, 1508, 1571
PfoI	TCCNGGA	2 cut(s)	918, 948
PkrI	GCNGC	4 cut(s)	104, 116, 1335, 1447
PleI	GAGTC	3 cut(s)	83, 1261, 1358
PpsI	GAGTC	3 cut(s)	83, 1261, 1358
PpuMI	RGGWCCY	1 cut(s)	946
PshBI	ATTAAT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	946
Psp6I	CCWGG	3 cut(s)	1122, 1384, 1501
PspFI	CCCAGC	1 cut(s)	1154
PspGI	CCWGG	3 cut(s)	1122, 1384, 1501
PspN4I	GGNNCC	4 cut(s)	247, 948, 978, 1462
PspPI	GGNCC	5 cut(s)	246, 946, 1374, 1604, 1639
PspPPI	RGGWCCY	1 cut(s)	946
RsaI	GTAC	1 cut(s)	1115
RsaNI	GTAC	1 cut(s)	1114
RseI	CAYNNNNRTG	1 cut(s)	1599
SaqAI	TTAA	9 cut(s)	180, 309, 897, 906, 936, 987, 996, 1095, 1149
SatI	GCNGC	4 cut(s)	103, 115, 1334, 1446
Sau3AI	GATC	3 cut(s)	93, 1138, 1471
Sau96I	GGNCC	5 cut(s)	246, 946, 1374, 1604, 1639
SchI	GAGTC	3 cut(s)	83, 1262, 1358
ScrFI	CCNGG	5 cut(s)	920, 950, 1124, 1386, 1503
SfaNI	GCATC	2 cut(s)	118, 1044
SinI	GGWCC	2 cut(s)	246, 946
SmiMI	CAYNNNNRTG	1 cut(s)	1599
SmlI	CTYRAG	1 cut(s)	1325
SmoI	CTYRAG	1 cut(s)	1325
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	1 cut(s)	1542
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	5 cut(s)	918, 948, 1122, 1384, 1501
StyI	CCWWGG	2 cut(s)	282, 1429
TaaI	ACNGT	1 cut(s)	1361
TaiI	ACGT	2 cut(s)	1215, 1357
TaqI	TCGA	2 cut(s)	92, 144
TfiI	GAWTC	4 cut(s)	963, 1321, 1508, 1571
Tru1I	TTAA	9 cut(s)	180, 309, 897, 906, 936, 987, 996, 1095, 1149
Tru9I	TTAA	9 cut(s)	180, 309, 897, 906, 936, 987, 996, 1095, 1149
TscAI	CASTG	1 cut(s)	1566
TseFI	GTSAC	2 cut(s)	1220, 1361
TseI	GCWGC	4 cut(s)	102, 114, 1333, 1445
Tsp45I	GTSAC	2 cut(s)	1220, 1361
TspDTI	ATGAA	4 cut(s)	234, 1014, 1284, 1580
TspGWI	ACGGA	2 cut(s)	70, 1604
TspRI	CASTG	1 cut(s)	1566
VpaK11BI	GGWCC	2 cut(s)	246, 946
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	6 cut(s)	169, 293, 1059, 1229, 1434, 1610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1427
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	1 cut(s)	1542
ZraI	GACGTC	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.