Rh7AG140800

DCD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011698
Physical Location & Seq
Forward (+)
11375351 .. 11377932
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG140800.1

Sequence Viewer

Length: 1029 bp
ATGGAGAACAACAACAACCAATCCTTCTGGCAATTCAGCGACCAGCTTCGTGTCCAGACGTCCAATCTCGCCAACCTTTCCGTCAACGACTCGATCTGGAGCAGCTCATACGGCAGCAAGAGGCCTGATGCGAGGAGGAACTTCGACATCAAGGTCGGCGGTGAGGTGAATTCTTTGATTAATTTGACCCCAAAAGGGTCTGATTTCAATGGCTTCAATGAAGGATTGGACTACAAGCAGAAAGGGTCCGACCCGAATGAGGGCTGGAACAGCTTCAAGCCCAAGGCTTCTGAATTCGGCGACAGGTTTAACAAAGCTTCAGACTTCAATTCTTTCAACCCAAAAGTTTCAGACTTCAATTCTTTCAACCCAAAAGCTTCAGACTTCAATTCTTTCAACCCAAAAGTTTCAGACTTTAATGGGTTTAACCAGAAAGTCCCGGACTTCAATGGGTTTAATCAGAAGGTTCCGGACTTCAATGGATTCAACCAGAAGGTTCCGGATTTTAACGGGTTTAATGAAGGGTGGAAACTCGGGGCTTCTGCTAATGGTGGCATCAATGGAGGCTTCAACAAGGGAATTTACTCCAAGCCTGCAATTCACAACAATAACATTAACCTGAACCTGAAGCCGTACAAGAACCAGGGTGAGGAGTTTGATCTTGGAGTTAAAGCTGGGAAGAAGAACAACAACAGCAACAAGAAGAAAAATGGTGATGACAATAACAAGGACGTCAAGGGTGACAAGAAATTCAAGACACTTCCACCCTCTGAGTCTCTCCCCAGAAATGAAACCATTGGTGGTTACATCTTCGTCTGCAACAATGATACCATGCAAGAGAATCTCAAGAGGCAGCTTTTTGGTTTGCCTCCACGTTACCGTGACTCAGTTCGGGCCATTACTCCAGGGCTGCCCCTTTTCCTTTACAACTACTCCACTCACCAACTCCATGGAATTTTTGAGGTTTGTGACTTTTACTTTAGCATGATCTTATCTAATGTTGTGAAGAAGTTGGAATTTGCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dev_Cell_Death

Protein Analysis

342

Amino Acids

38.52

Weight (kDa)

9.12

Isoelectric Point (pI)

21.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dev_Cell_Death PF10539 267 - 322 5.6e-19 Development and cell death domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AatII GACGTC 2 cut(s) 62, 735
AccIII TCCGGA 2 cut(s) 469, 499
AciI CCGC 1 cut(s) 159
AcsI RAATTY 6 cut(s) 169, 293, 579, 749, 954, 1016
AcuI CTGAAG 3 cut(s) 303, 363, 647
AcyI GRCGYC 2 cut(s) 59, 732
AfaI GTAC 1 cut(s) 635
AfiI CCNNNNNNNGG 4 cut(s) 195, 259, 260, 649
AjnI CCWGG 2 cut(s) 642, 904
AluBI AGCT 7 cut(s) 46, 105, 273, 317, 377, 674, 856
AluI AGCT 7 cut(s) 46, 105, 273, 317, 377, 674, 856
Alw26I GTCTC 1 cut(s) 780
Ama87I CYCGRG 1 cut(s) 533
Aor13HI TCCGGA 2 cut(s) 469, 499
AoxI GGCC 2 cut(s) 122, 894
ApeKI GCWGC 4 cut(s) 102, 114, 853, 910
ApoI RAATTY 6 cut(s) 169, 293, 579, 749, 954, 1016
AseI ATTAAT 1 cut(s) 180
Asp700I GAANNNNTTC 1 cut(s) 272
AspS9I GGNCC 2 cut(s) 246, 894
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 6 cut(s) 173, 178, 659, 725, 752, 932
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 1 cut(s) 246
BbvI GCAGC 4 cut(s) 114, 126, 865, 897
BceAI ACGGC 2 cut(s) 127, 616
BciT130I CCWGG 2 cut(s) 644, 906
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 1 cut(s) 780
BisI GCNGC 4 cut(s) 103, 115, 854, 911
BlsI GCNGC 4 cut(s) 104, 116, 855, 912
Bme1390I CCNGG 3 cut(s) 440, 644, 906
Bme18I GGWCC 1 cut(s) 246
BmeT110I CYCGRG 1 cut(s) 533
BmgT120I GGNCC 2 cut(s) 246, 894
BmiI GGNNCC 3 cut(s) 247, 468, 498
BmrFI CCNGG 3 cut(s) 440, 644, 906
BmsI GCATC 2 cut(s) 118, 564
BpmI CTGGAG 2 cut(s) 118, 888
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 440
BsaHI GRCGYC 2 cut(s) 59, 732
BsaJI CCNNGG 4 cut(s) 282, 643, 905, 949
BsaWI WCCGGW 2 cut(s) 469, 499
BsaXI ACNNNNNCTCC 2 cut(s) 917, 947
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 259, 260, 649
BseAI TCCGGA 2 cut(s) 469, 499
BseBI CCWGG 2 cut(s) 644, 906
BseDI CCNNGG 4 cut(s) 282, 643, 905, 949
BseLI CCNNNNNNNGG 4 cut(s) 195, 259, 260, 649
BseMII CTCAG 2 cut(s) 762, 900
BseRI GAGGAG 2 cut(s) 148, 665
BseXI GCAGC 4 cut(s) 114, 126, 865, 897
BseYI CCCAGC 1 cut(s) 674
BshFI GGCC 2 cut(s) 124, 896
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 3 cut(s) 440, 470, 500
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 4 cut(s) 195, 259, 260, 649
BsmAI GTCTC 1 cut(s) 780
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 2 cut(s) 124, 896
BsoBI CYCGRG 1 cut(s) 533
Bsp13I TCCGGA 2 cut(s) 469, 499
Bsp143I GATC 3 cut(s) 93, 658, 987
Bsp19I CCATGG 1 cut(s) 949
BspACI CCGC 1 cut(s) 159
BspANI GGCC 2 cut(s) 124, 896
BspCNI CTCAG 2 cut(s) 763, 899
BspEI TCCGGA 2 cut(s) 469, 499
BspLI GGNNCC 3 cut(s) 247, 468, 498
BssECI CCNNGG 4 cut(s) 282, 643, 905, 949
BssMI GATC 3 cut(s) 93, 658, 987
BssNI GRCGYC 2 cut(s) 59, 732
BssT1I CCWWGG 2 cut(s) 282, 949
Bst2UI CCWGG 2 cut(s) 644, 906
Bst4CI ACNGT 1 cut(s) 881
BstACI GRCGYC 2 cut(s) 59, 732
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 2 cut(s) 771, 886
BstDSI CCRYGG 1 cut(s) 949
BstKTI GATC 3 cut(s) 96, 661, 990
BstMAI GTCTC 1 cut(s) 780
BstMBI GATC 3 cut(s) 93, 658, 987
BstMWI GCNNNNNNNGC 2 cut(s) 111, 270
BstNI CCWGG 2 cut(s) 644, 906
BstSCI CCNGG 3 cut(s) 438, 642, 904
BstV1I GCAGC 4 cut(s) 114, 126, 865, 897
BstXI CCANNNNNNTGG 1 cut(s) 950
BsuRI GGCC 2 cut(s) 124, 896
BtgI CCRYGG 1 cut(s) 949
Cac8I GCNNGC 1 cut(s) 594
Cfr13I GGNCC 2 cut(s) 246, 894
Csp6I GTAC 1 cut(s) 634
CviAII CATG 3 cut(s) 832, 950, 985
CviQI GTAC 1 cut(s) 634
DdeI CTNAG 2 cut(s) 771, 886
DpnI GATC 3 cut(s) 95, 660, 989
DpnII GATC 3 cut(s) 93, 658, 987
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 282, 949
Eco147I AGGCCT 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 246
Eco57I CTGAAG 3 cut(s) 303, 363, 647
Eco88I CYCGRG 1 cut(s) 533
EcoRI GAATTC 2 cut(s) 169, 293
EcoRII CCWGG 2 cut(s) 642, 904
EcoT14I CCWWGG 2 cut(s) 282, 949
ErhI CCWWGG 2 cut(s) 282, 949
FaeI CATG 3 cut(s) 835, 953, 988
FaiI YATR 4 cut(s) 109, 833, 951, 986
FaqI GGGAC 1 cut(s) 422
FatI CATG 3 cut(s) 831, 949, 984
Fnu4HI GCNGC 4 cut(s) 103, 115, 854, 911
Fsp4HI GCNGC 4 cut(s) 103, 115, 854, 911
GluI GCNGC 4 cut(s) 103, 115, 854, 911
GsaI CCCAGC 1 cut(s) 678
GsuI CTGGAG 2 cut(s) 118, 888
HaeIII GGCC 2 cut(s) 124, 896
HapII CCGG 3 cut(s) 440, 470, 500
Hin1I GRCGYC 2 cut(s) 59, 732
Hin1II CATG 3 cut(s) 835, 953, 988
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 2 cut(s) 315, 375
HinfI GANTC 5 cut(s) 89, 483, 773, 841, 884
HpaII CCGG 3 cut(s) 440, 470, 500
HphI GGTGA 6 cut(s) 173, 178, 659, 725, 752, 932
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 9 cut(s) 202, 250, 292, 322, 352, 382, 412, 462, 772
Hpy188III TCNNGA 6 cut(s) 55, 97, 470, 500, 754, 847
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 5 cut(s) 34, 215, 457, 487, 515
HpyCH4III ACNGT 1 cut(s) 881
HpyCH4IV ACGT 3 cut(s) 59, 732, 874
HpyCH4V TGCA 3 cut(s) 596, 819, 835
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 270
HpyF3I CTNAG 2 cut(s) 771, 886
HpySE526I ACGT 3 cut(s) 59, 732, 874
Hsp92I GRCGYC 2 cut(s) 59, 732
Hsp92II CATG 3 cut(s) 835, 953, 988
Kpn2I TCCGGA 2 cut(s) 469, 499
Kzo9I GATC 3 cut(s) 93, 658, 987
LmnI GCTCC 1 cut(s) 99
Lsp1109I GCAGC 4 cut(s) 114, 126, 865, 897
LweI GCATC 2 cut(s) 118, 564
MaeII ACGT 3 cut(s) 59, 732, 874
MaeIII GTNAC 5 cut(s) 740, 803, 875, 881, 968
MalI GATC 3 cut(s) 95, 660, 989
MboI GATC 3 cut(s) 93, 658, 987
MboII GAAGA 5 cut(s) 691, 694, 715, 802, 1018
MlyI GAGTC 3 cut(s) 83, 782, 878
MmeI TCCRAC 2 cut(s) 273, 993
MroI TCCGGA 2 cut(s) 469, 499
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 9 cut(s) 180, 309, 417, 426, 456, 507, 516, 615, 669
MspI CCGG 3 cut(s) 440, 470, 500
MspR9I CCNGG 3 cut(s) 440, 644, 906
MvaI CCWGG 2 cut(s) 644, 906
MwoI GCNNNNNNNGC 2 cut(s) 111, 270
NciI CCSGG 1 cut(s) 440
NcoI CCATGG 1 cut(s) 949
NdeII GATC 3 cut(s) 93, 658, 987
NlaIII CATG 3 cut(s) 835, 953, 988
NlaIV GGNNCC 3 cut(s) 247, 468, 498
NmuCI GTSAC 3 cut(s) 740, 881, 968
PceI AGGCCT 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 483, 841
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 4 cut(s) 104, 116, 855, 912
PleI GAGTC 3 cut(s) 83, 781, 878
PpsI GAGTC 3 cut(s) 83, 781, 878
PshBI ATTAAT 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 642, 904
PspFI CCCAGC 1 cut(s) 674
PspGI CCWGG 2 cut(s) 642, 904
PspN4I GGNNCC 3 cut(s) 247, 468, 498
PspPI GGNCC 2 cut(s) 246, 894
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
SaqAI TTAA 9 cut(s) 180, 309, 417, 426, 456, 507, 516, 615, 669
SatI GCNGC 4 cut(s) 103, 115, 854, 911
Sau3AI GATC 3 cut(s) 93, 658, 987
Sau96I GGNCC 2 cut(s) 246, 894
SchI GAGTC 3 cut(s) 83, 782, 878
ScrFI CCNGG 3 cut(s) 440, 644, 906
SfaNI GCATC 2 cut(s) 118, 564
SinI GGWCC 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 1 cut(s) 159
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 438, 642, 904
StyI CCWWGG 2 cut(s) 282, 949
TaaI ACNGT 1 cut(s) 881
TaiI ACGT 3 cut(s) 62, 735, 877
TaqI TCGA 2 cut(s) 92, 144
TfiI GAWTC 2 cut(s) 483, 841
Tru1I TTAA 9 cut(s) 180, 309, 417, 426, 456, 507, 516, 615, 669
Tru9I TTAA 9 cut(s) 180, 309, 417, 426, 456, 507, 516, 615, 669
TseFI GTSAC 3 cut(s) 740, 881, 968
TseI GCWGC 4 cut(s) 102, 114, 853, 910
Tsp45I GTSAC 3 cut(s) 740, 881, 968
TspDTI ATGAA 3 cut(s) 234, 534, 804
TspGWI ACGGA 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 246
VspI ATTAAT 1 cut(s) 180
XapI RAATTY 6 cut(s) 169, 293, 579, 749, 954, 1016
XmnI GAANNNNTTC 1 cut(s) 272
ZraI GACGTC 2 cut(s) 60, 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.