Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8391571.1

Orthogroup ID

OG0011698

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1220

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8391571.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 952 bp

caacaaccaatccttctggcaattcagcgaccagcttcgtgtccagacatccaatctcgccaacctttccgtcaacgactcgatctggagcagctcatacggcagcaagaggcctgatgcgaggaggaacttcgacatcaaggtcggcggtgaggtgaattctttgattaatttgaccccaaaagggtctgatttcaatggcttcaatgaaggattggactacaagcagaaagggtccgacccgaatgagggctggaacagcttcaagcccaaggcttctgaattcagcgacaggtttaacaaagcttcagacttcaattctttcaacccaaaagtttcagacttcaattctttcaacccaaaagcttcagacttcaattctttcaacccaaaagtttcagactttaatgggtttaaccagaaagtcccggacttcaatgggtttaatcagaaggtcccggacttcaatggattcaaccagaaggttccggattttaacgggtttaatgaagggtggaaactcggggcttctgctaatggtggcatcaatggaggcttcaacaagggaatttactccaagcctgcaattcacaacaataacattaacctgaacctgaagccgtacaagaaccagggtgaggagtttgatcttggagttaaagctgggaagaagaacaacaatagcaacaagaagaaaaatggtgatgacaataacaaggacgtcaagggtgacaagaaattcaagacacttccaccctctgagtctctccccagaaatgaaaccattggtggttacatcttcgtctgcaacaatgataccatgcaagagaatctcaagaggcagctttttggtttgcctccacgttaccgtgactcagttcgggccattactccagggttgccccttttcctttacaactactccacccaccaactccatggaatttttgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

317

Amino Acids

35.61

Weight (kDa)

9.29

Isoelectric Point (pI)

20.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42050
fragaria_vesca	FvH4_5g04970
malus_domestica	MD06G1110600.v1.1 MD14G1131300.v1.1
prunus_persica	Prupe.5G123200_v2.0.a1 Prupe.5G123200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194091
rosa_laevigata	RLG00000004218
rosa_multiflora	Rmu_co8036242.1_g000001 Rmu_co8391571.1_g000001 Rmu_sc0003468.1_g000005 Rmu_sc0009433.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261560
rosa_rugosa	Rorug07G0013700
rosa_samantha	Rh7AG140800 Rh7BG141500 Rh7CG144900 Rh7DG142300
rosa_wichuraiana	Rw7G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	141
AatII	GACGTC	1 cut(s)	724
AccIII	TCCGGA	1 cut(s)	488
AciI	CCGC	1 cut(s)	148
AcsI	RAATTY	5 cut(s)	158, 282, 568, 738, 943
AcuI	CTGAAG	3 cut(s)	292, 352, 636
AcyI	GRCGYC	1 cut(s)	721
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	4 cut(s)	184, 248, 249, 638
AjnI	CCWGG	2 cut(s)	631, 893
AluBI	AGCT	7 cut(s)	35, 94, 262, 306, 366, 663, 845
AluI	AGCT	7 cut(s)	35, 94, 262, 306, 366, 663, 845
Alw26I	GTCTC	1 cut(s)	769
Ama87I	CYCGRG	1 cut(s)	522
Aor13HI	TCCGGA	1 cut(s)	488
AoxI	GGCC	2 cut(s)	111, 883
ApeKI	GCWGC	3 cut(s)	91, 103, 842
ApoI	RAATTY	5 cut(s)	158, 282, 568, 738, 943
AseI	ATTAAT	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	3 cut(s)	235, 455, 883
AsuC2I	CCSGG	2 cut(s)	429, 459
AsuHPI	GGTGA	5 cut(s)	162, 167, 648, 714, 741
AvaI	CYCGRG	1 cut(s)	522
AvaII	GGWCC	2 cut(s)	235, 455
BbvI	GCAGC	3 cut(s)	103, 115, 854
BceAI	ACGGC	2 cut(s)	116, 605
BciT130I	CCWGG	2 cut(s)	633, 895
BcnI	CCSGG	2 cut(s)	429, 459
BcoDI	GTCTC	1 cut(s)	769
BisI	GCNGC	3 cut(s)	92, 104, 843
BlsI	GCNGC	3 cut(s)	93, 105, 844
Bme1390I	CCNGG	4 cut(s)	429, 459, 633, 895
Bme18I	GGWCC	2 cut(s)	235, 455
BmeT110I	CYCGRG	1 cut(s)	522
BmgT120I	GGNCC	3 cut(s)	235, 455, 883
BmiI	GGNNCC	3 cut(s)	236, 457, 487
BmrFI	CCNGG	4 cut(s)	429, 459, 633, 895
BmsI	GCATC	2 cut(s)	107, 553
BpmI	CTGGAG	2 cut(s)	107, 877
BpuEI	CTTGAG	1 cut(s)	819
BpuMI	CCSGG	2 cut(s)	429, 459
BsaHI	GRCGYC	1 cut(s)	721
BsaJI	CCNNGG	4 cut(s)	271, 632, 894, 938
BsaWI	WCCGGW	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 248, 249, 638
BseAI	TCCGGA	1 cut(s)	488
BseBI	CCWGG	2 cut(s)	633, 895
BseDI	CCNNGG	4 cut(s)	271, 632, 894, 938
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	4 cut(s)	184, 248, 249, 638
BseMII	CTCAG	2 cut(s)	751, 889
BseRI	GAGGAG	2 cut(s)	137, 654
BseXI	GCAGC	3 cut(s)	103, 115, 854
BseYI	CCCAGC	1 cut(s)	663
BshFI	GGCC	2 cut(s)	113, 885
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	3 cut(s)	429, 459, 489
BslFI	GGGAC	2 cut(s)	411, 441
BslI	CCNNNNNNNGG	4 cut(s)	184, 248, 249, 638
BsmAI	GTCTC	1 cut(s)	769
BsmFI	GGGAC	2 cut(s)	411, 441
BsnI	GGCC	2 cut(s)	113, 885
BsoBI	CYCGRG	1 cut(s)	522
Bsp13I	TCCGGA	1 cut(s)	488
Bsp143I	GATC	2 cut(s)	82, 647
Bsp19I	CCATGG	1 cut(s)	938
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	2 cut(s)	113, 885
BspCNI	CTCAG	2 cut(s)	752, 888
BspEI	TCCGGA	1 cut(s)	488
BspLI	GGNNCC	3 cut(s)	236, 457, 487
BssECI	CCNNGG	4 cut(s)	271, 632, 894, 938
BssMI	GATC	2 cut(s)	82, 647
BssNI	GRCGYC	1 cut(s)	721
BssT1I	CCWWGG	2 cut(s)	271, 938
Bst2UI	CCWGG	2 cut(s)	633, 895
Bst4CI	ACNGT	1 cut(s)	870
BstACI	GRCGYC	1 cut(s)	721
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	2 cut(s)	760, 875
BstDSI	CCRYGG	1 cut(s)	938
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	2 cut(s)	85, 650
BstMAI	GTCTC	1 cut(s)	769
BstMBI	GATC	2 cut(s)	82, 647
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 259
BstNI	CCWGG	2 cut(s)	633, 895
BstSCI	CCNGG	4 cut(s)	427, 457, 631, 893
BstV1I	GCAGC	3 cut(s)	103, 115, 854
BstXI	CCANNNNNNTGG	1 cut(s)	939
BsuRI	GGCC	2 cut(s)	113, 885
BtgI	CCRYGG	1 cut(s)	938
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	583
Cfr13I	GGNCC	3 cut(s)	235, 455, 883
Csp6I	GTAC	1 cut(s)	623
CviAII	CATG	2 cut(s)	821, 939
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	2 cut(s)	760, 875
DpnI	GATC	2 cut(s)	84, 649
DpnII	GATC	2 cut(s)	82, 647
DrdI	GACNNNNNNGTC	1 cut(s)	141
DseDI	GACNNNNNNGTC	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	271, 938
Eco147I	AGGCCT	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	235, 455
Eco57I	CTGAAG	3 cut(s)	292, 352, 636
Eco88I	CYCGRG	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	455
EcoRI	GAATTC	2 cut(s)	158, 282
EcoRII	CCWGG	2 cut(s)	631, 893
EcoT14I	CCWWGG	2 cut(s)	271, 938
ErhI	CCWWGG	2 cut(s)	271, 938
FaeI	CATG	2 cut(s)	824, 942
FaiI	YATR	3 cut(s)	98, 822, 940
FaqI	GGGAC	2 cut(s)	411, 441
FatI	CATG	2 cut(s)	820, 938
Fnu4HI	GCNGC	3 cut(s)	92, 104, 843
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	3 cut(s)	92, 104, 843
GluI	GCNGC	3 cut(s)	92, 104, 843
GsaI	CCCAGC	1 cut(s)	667
GsuI	CTGGAG	2 cut(s)	107, 877
HaeIII	GGCC	2 cut(s)	113, 885
HapII	CCGG	3 cut(s)	429, 459, 489
Hin1I	GRCGYC	1 cut(s)	721
Hin1II	CATG	2 cut(s)	824, 942
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HindIII	AAGCTT	2 cut(s)	304, 364
HinfI	GANTC	5 cut(s)	78, 472, 762, 830, 873
HpaII	CCGG	3 cut(s)	429, 459, 489
HphI	GGTGA	5 cut(s)	162, 167, 648, 714, 741
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	9 cut(s)	191, 239, 281, 311, 341, 371, 401, 451, 761
Hpy188III	TCNNGA	5 cut(s)	44, 86, 489, 743, 836
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	5 cut(s)	23, 204, 446, 476, 504
HpyCH4III	ACNGT	1 cut(s)	870
HpyCH4IV	ACGT	2 cut(s)	721, 863
HpyCH4V	TGCA	3 cut(s)	585, 808, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 259
HpyF3I	CTNAG	2 cut(s)	760, 875
HpySE526I	ACGT	2 cut(s)	721, 863
Hsp92I	GRCGYC	1 cut(s)	721
Hsp92II	CATG	2 cut(s)	824, 942
Kpn2I	TCCGGA	1 cut(s)	488
Kzo9I	GATC	2 cut(s)	82, 647
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	3 cut(s)	103, 115, 854
LweI	GCATC	2 cut(s)	107, 553
MaeII	ACGT	2 cut(s)	721, 863
MaeIII	GTNAC	4 cut(s)	729, 792, 864, 870
MalI	GATC	2 cut(s)	84, 649
MboI	GATC	2 cut(s)	82, 647
MboII	GAAGA	4 cut(s)	680, 683, 704, 791
MlyI	GAGTC	3 cut(s)	72, 771, 867
MmeI	TCCRAC	1 cut(s)	262
MroI	TCCGGA	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	9 cut(s)	169, 298, 406, 415, 445, 496, 505, 604, 658
MspI	CCGG	3 cut(s)	429, 459, 489
MspR9I	CCNGG	4 cut(s)	429, 459, 633, 895
MvaI	CCWGG	2 cut(s)	633, 895
MwoI	GCNNNNNNNGC	2 cut(s)	100, 259
NciI	CCSGG	2 cut(s)	429, 459
NcoI	CCATGG	1 cut(s)	938
NdeII	GATC	2 cut(s)	82, 647
NlaIII	CATG	2 cut(s)	824, 942
NlaIV	GGNNCC	3 cut(s)	236, 457, 487
NmuCI	GTSAC	2 cut(s)	729, 870
PceI	AGGCCT	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	472, 830
PfoI	TCCNGGA	2 cut(s)	427, 457
PkrI	GCNGC	3 cut(s)	93, 105, 844
PleI	GAGTC	3 cut(s)	72, 770, 867
PpsI	GAGTC	3 cut(s)	72, 770, 867
PpuMI	RGGWCCY	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	631, 893
PspFI	CCCAGC	1 cut(s)	663
PspGI	CCWGG	2 cut(s)	631, 893
PspN4I	GGNNCC	3 cut(s)	236, 457, 487
PspPI	GGNCC	3 cut(s)	235, 455, 883
PspPPI	RGGWCCY	1 cut(s)	455
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
SaqAI	TTAA	9 cut(s)	169, 298, 406, 415, 445, 496, 505, 604, 658
SatI	GCNGC	3 cut(s)	92, 104, 843
Sau3AI	GATC	2 cut(s)	82, 647
Sau96I	GGNCC	3 cut(s)	235, 455, 883
SchI	GAGTC	3 cut(s)	72, 771, 867
ScrFI	CCNGG	4 cut(s)	429, 459, 633, 895
SfaNI	GCATC	2 cut(s)	107, 553
SinI	GGWCC	2 cut(s)	235, 455
SmlI	CTYRAG	1 cut(s)	834
SmoI	CTYRAG	1 cut(s)	834
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	4 cut(s)	427, 457, 631, 893
StyI	CCWWGG	2 cut(s)	271, 938
TaaI	ACNGT	1 cut(s)	870
TaiI	ACGT	2 cut(s)	724, 866
TaqI	TCGA	2 cut(s)	81, 133
TfiI	GAWTC	2 cut(s)	472, 830
Tru1I	TTAA	9 cut(s)	169, 298, 406, 415, 445, 496, 505, 604, 658
Tru9I	TTAA	9 cut(s)	169, 298, 406, 415, 445, 496, 505, 604, 658
TseFI	GTSAC	2 cut(s)	729, 870
TseI	GCWGC	3 cut(s)	91, 103, 842
Tsp45I	GTSAC	2 cut(s)	729, 870
TspDTI	ATGAA	3 cut(s)	223, 523, 793
TspGWI	ACGGA	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	235, 455
VspI	ATTAAT	1 cut(s)	169
XapI	RAATTY	5 cut(s)	158, 282, 568, 738, 943
XcmI	CCANNNNNNNNNTGG	1 cut(s)	936
XmnI	GAANNNNTTC	1 cut(s)	261
ZraI	GACGTC	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.