Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003468.1

Orthogroup ID

OG0011698

Physical Location & Seq

Genomic Coordinates Reverse (-)

17207 .. 18931

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003468.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atggagaacagcaacaaccaatccttctggcaattcagcgaccagcttcgtgtccagacatccaatctcgccaacctttccgtcaacgactcgatctggagcagctcatacggcagcaagaggcctgatgcgaggaggaacttcgacatcaaggtcggcggtgaggtgaattctttgattaatttgaccccaaaagggtctgatttcaatggcttcaatgaaggattggactacaagcagaaagggtccgacccgaatgagggctggaacagcttcaagcccaaggcttctgaattcagcgacaggtttaacaaagcttcagacttcaattctttcaacccaaaagtttcagactttaatgggtttaaccagaaagtcccggacttcaatgggtttaatcagaaggtcccggacttcaatggattcaaccagaaggttccggattttaacgggtttaatgaagggtggaaactcggggcttctgctaatggtggcatcaatggaggcttcaacaagggaatttactccaagcctgcaattcacaacaataacattaacctgaacctgaagccgtacaagaaccagggtgaggagtttgatcttggagttaaagctgggaagaagaacaacaatagcaacaagaagaaaaatggtgatgacaataacaaggacgtcaagggtgacaagaaattcaagacacttccaccctctgagtctctccccagaaatgaaaccattggtggttacatcttcgtctgcaacaatgataccatgcaagagaatctcaagaggcagctttttggtttgcctccacgttaccgtgactcagttcgggccattactccagggttgccccttttcctttacaactactccacccaccaactccatggaatttttgaggctgcaagctttggaggaaccaactttgatccatctgcttgggaagacaagaaatgccctggtgaatcgcgcttccctgctcaggtgaaagttctaactaggaaagtctgtgaaccactggaagaggattccttcaggccaattcttcatcactacgatggccctaaattccgtcttgaactcagcgtgccagaggccctctctctgttggatatatttgcagaccaagatgatatatttgtaactgaaaccccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

386

Amino Acids

43.38

Weight (kDa)

6.97

Isoelectric Point (pI)

27.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42050
fragaria_vesca	FvH4_5g04970
malus_domestica	MD06G1110600.v1.1 MD14G1131300.v1.1
prunus_persica	Prupe.5G123200_v2.0.a1 Prupe.5G123200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194091
rosa_laevigata	RLG00000004218
rosa_multiflora	Rmu_co8036242.1_g000001 Rmu_co8391571.1_g000001 Rmu_sc0003468.1_g000005 Rmu_sc0009433.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261560
rosa_rugosa	Rorug07G0013700
rosa_samantha	Rh7AG140800 Rh7BG141500 Rh7CG144900 Rh7DG142300
rosa_wichuraiana	Rw7G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AatII	GACGTC	1 cut(s)	675
AccII	CGCG	1 cut(s)	973
AccIII	TCCGGA	1 cut(s)	439
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	1 cut(s)	926
AcsI	RAATTY	6 cut(s)	169, 293, 519, 689, 894, 1070
AcuI	CTGAAG	3 cut(s)	303, 587, 1021
AcyI	GRCGYC	1 cut(s)	672
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	5 cut(s)	195, 259, 260, 589, 985
AjnI	CCWGG	3 cut(s)	582, 844, 961
AluBI	AGCT	7 cut(s)	46, 105, 273, 317, 614, 796, 912
AluI	AGCT	7 cut(s)	46, 105, 273, 317, 614, 796, 912
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	1 cut(s)	926
Ama87I	CYCGRG	1 cut(s)	473
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	5 cut(s)	122, 834, 1040, 1063, 1098
ApeKI	GCWGC	4 cut(s)	102, 114, 793, 905
ApoI	RAATTY	6 cut(s)	169, 293, 519, 689, 894, 1070
AseI	ATTAAT	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	975
AspS9I	GGNCC	5 cut(s)	246, 406, 834, 1064, 1099
AsuC2I	CCSGG	2 cut(s)	380, 410
AsuHPI	GGTGA	7 cut(s)	173, 178, 599, 665, 692, 977, 1000
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	2 cut(s)	246, 406
BbsI	GAAGAC	1 cut(s)	954
BbvI	GCAGC	4 cut(s)	114, 126, 805, 892
BccI	CCATC	2 cut(s)	943, 1055
BceAI	ACGGC	2 cut(s)	127, 556
BciT130I	CCWGG	3 cut(s)	584, 846, 963
BcnI	CCSGG	2 cut(s)	380, 410
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	1 cut(s)	1002
BisI	GCNGC	4 cut(s)	103, 115, 794, 906
BlsI	GCNGC	4 cut(s)	104, 116, 795, 907
Bme1390I	CCNGG	5 cut(s)	380, 410, 584, 846, 963
Bme18I	GGWCC	2 cut(s)	246, 406
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	5 cut(s)	246, 406, 834, 1064, 1099
BmiI	GGNNCC	4 cut(s)	247, 408, 438, 922
BmrFI	CCNGG	5 cut(s)	380, 410, 584, 846, 963
BmsI	GCATC	2 cut(s)	118, 504
BpiI	GAAGAC	1 cut(s)	954
BplI	GAGNNNNNCTC	2 cut(s)	1088, 1120
BpmI	CTGGAG	2 cut(s)	118, 828
Bpu10I	CCTNAGC	1 cut(s)	984
BpuEI	CTTGAG	1 cut(s)	770
BpuMI	CCSGG	2 cut(s)	380, 410
BsaHI	GRCGYC	1 cut(s)	672
BsaJI	CCNNGG	5 cut(s)	282, 583, 845, 889, 961
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bsc4I	CCNNNNNNNGG	5 cut(s)	195, 259, 260, 589, 985
Bse1I	ACTGG	1 cut(s)	1026
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	3 cut(s)	584, 846, 963
BseDI	CCNNGG	5 cut(s)	282, 583, 845, 889, 961
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	5 cut(s)	195, 259, 260, 589, 985
BseMII	CTCAG	4 cut(s)	702, 840, 998, 1099
BseNI	ACTGG	1 cut(s)	1026
BseRI	GAGGAG	2 cut(s)	148, 605
BseXI	GCAGC	4 cut(s)	114, 126, 805, 892
BseYI	CCCAGC	1 cut(s)	614
Bsh1236I	CGCG	1 cut(s)	973
BshFI	GGCC	5 cut(s)	124, 836, 1042, 1065, 1100
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	3 cut(s)	380, 410, 440
BslFI	GGGAC	2 cut(s)	362, 392
BslI	CCNNNNNNNGG	5 cut(s)	195, 259, 260, 589, 985
BsmAI	GTCTC	1 cut(s)	720
BsmFI	GGGAC	2 cut(s)	362, 392
BsnI	GGCC	5 cut(s)	124, 836, 1042, 1065, 1100
BsoBI	CYCGRG	1 cut(s)	473
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	93, 598, 931
Bsp19I	CCATGG	1 cut(s)	889
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	5 cut(s)	124, 836, 1042, 1065, 1100
BspCNI	CTCAG	4 cut(s)	703, 839, 997, 1098
BspEI	TCCGGA	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	973
BspLI	GGNNCC	4 cut(s)	247, 408, 438, 922
BspPI	GGATC	1 cut(s)	926
BsrI	ACTGG	1 cut(s)	1026
BssECI	CCNNGG	5 cut(s)	282, 583, 845, 889, 961
BssMI	GATC	3 cut(s)	93, 598, 931
BssNI	GRCGYC	1 cut(s)	672
BssT1I	CCWWGG	2 cut(s)	282, 889
Bst2UI	CCWGG	3 cut(s)	584, 846, 963
Bst4CI	ACNGT	1 cut(s)	821
Bst6I	CTCTTC	1 cut(s)	1020
BstACI	GRCGYC	1 cut(s)	672
BstC8I	GCNNGC	3 cut(s)	534, 910, 1091
BstDEI	CTNAG	4 cut(s)	711, 826, 984, 1085
BstDSI	CCRYGG	1 cut(s)	889
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	973
BstHHI	GCGC	1 cut(s)	975
BstKTI	GATC	3 cut(s)	96, 601, 934
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	3 cut(s)	93, 598, 931
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 270
BstNI	CCWGG	3 cut(s)	584, 846, 963
BstSCI	CCNGG	5 cut(s)	378, 408, 582, 844, 961
BstUI	CGCG	1 cut(s)	973
BstV1I	GCAGC	4 cut(s)	114, 126, 805, 892
BstV2I	GAAGAC	1 cut(s)	954
BstXI	CCANNNNNNTGG	2 cut(s)	890, 942
BsuRI	GGCC	5 cut(s)	124, 836, 1042, 1065, 1100
BtgI	CCRYGG	1 cut(s)	889
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	1019
Cac8I	GCNNGC	3 cut(s)	534, 910, 1091
CfoI	GCGC	1 cut(s)	975
Cfr13I	GGNCC	5 cut(s)	246, 406, 834, 1064, 1099
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	2 cut(s)	772, 890
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	4 cut(s)	711, 826, 984, 1085
DpnI	GATC	3 cut(s)	95, 600, 933
DpnII	GATC	3 cut(s)	93, 598, 931
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	1020
EarI	CTCTTC	1 cut(s)	1020
Eco130I	CCWWGG	2 cut(s)	282, 889
Eco147I	AGGCCT	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	246, 406
Eco57I	CTGAAG	3 cut(s)	303, 587, 1021
Eco88I	CYCGRG	1 cut(s)	473
EcoO109I	RGGNCCY	2 cut(s)	406, 1099
EcoRI	GAATTC	2 cut(s)	169, 293
EcoRII	CCWGG	3 cut(s)	582, 844, 961
EcoT14I	CCWWGG	2 cut(s)	282, 889
ErhI	CCWWGG	2 cut(s)	282, 889
FaeI	CATG	2 cut(s)	775, 893
FaiI	YATR	5 cut(s)	109, 773, 891, 1118, 1139
FaqI	GGGAC	2 cut(s)	362, 392
FatI	CATG	2 cut(s)	771, 889
Fnu4HI	GCNGC	4 cut(s)	103, 115, 794, 906
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	103, 115, 794, 906
FspBI	CTAG	1 cut(s)	1002
GlaI	GCGC	1 cut(s)	974
GluI	GCNGC	4 cut(s)	103, 115, 794, 906
GsaI	CCCAGC	1 cut(s)	618
GsuI	CTGGAG	2 cut(s)	118, 828
HaeIII	GGCC	5 cut(s)	124, 836, 1042, 1065, 1100
HapII	CCGG	3 cut(s)	380, 410, 440
HhaI	GCGC	1 cut(s)	975
Hin1I	GRCGYC	1 cut(s)	672
Hin1II	CATG	2 cut(s)	775, 893
Hin6I	GCGC	1 cut(s)	973
HinP1I	GCGC	1 cut(s)	973
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	2 cut(s)	315, 910
HinfI	GANTC	7 cut(s)	89, 423, 713, 781, 824, 968, 1031
HpaII	CCGG	3 cut(s)	380, 410, 440
HphI	GGTGA	7 cut(s)	173, 178, 599, 665, 692, 977, 1000
Hpy166II	GTNNAC	2 cut(s)	85, 1016
Hpy188I	TCNGA	7 cut(s)	202, 250, 292, 322, 352, 402, 712
Hpy188III	TCNNGA	6 cut(s)	55, 97, 440, 694, 787, 1079
Hpy8I	GTNNAC	2 cut(s)	85, 1016
HpyAV	CCTTC	6 cut(s)	34, 215, 397, 427, 455, 1045
HpyCH4III	ACNGT	1 cut(s)	821
HpyCH4IV	ACGT	2 cut(s)	672, 814
HpyCH4V	TGCA	5 cut(s)	536, 759, 775, 908, 1124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 270
HpyF3I	CTNAG	4 cut(s)	711, 826, 984, 1085
HpySE526I	ACGT	2 cut(s)	672, 814
Hsp92I	GRCGYC	1 cut(s)	672
Hsp92II	CATG	2 cut(s)	775, 893
HspAI	GCGC	1 cut(s)	973
Kpn2I	TCCGGA	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	93, 598, 931
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	4 cut(s)	114, 126, 805, 892
LweI	GCATC	2 cut(s)	118, 504
MaeI	CTAG	1 cut(s)	1002
MaeII	ACGT	2 cut(s)	672, 814
MaeIII	GTNAC	5 cut(s)	680, 743, 815, 821, 1144
MalI	GATC	3 cut(s)	95, 600, 933
MboI	GATC	3 cut(s)	93, 598, 931
MboII	GAAGA	7 cut(s)	631, 634, 655, 742, 959, 1037, 1040
MlyI	GAGTC	3 cut(s)	83, 722, 818
MmeI	TCCRAC	2 cut(s)	273, 1092
MroI	TCCGGA	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	9 cut(s)	180, 309, 357, 366, 396, 447, 456, 555, 609
MslI	CAYNNNNRTG	1 cut(s)	1059
MspI	CCGG	3 cut(s)	380, 410, 440
MspR9I	CCNGG	5 cut(s)	380, 410, 584, 846, 963
MvaI	CCWGG	3 cut(s)	584, 846, 963
MvnI	CGCG	1 cut(s)	973
MwoI	GCNNNNNNNGC	2 cut(s)	111, 270
NciI	CCSGG	2 cut(s)	380, 410
NcoI	CCATGG	1 cut(s)	889
NdeII	GATC	3 cut(s)	93, 598, 931
NlaIII	CATG	2 cut(s)	775, 893
NlaIV	GGNNCC	4 cut(s)	247, 408, 438, 922
NmuCI	GTSAC	2 cut(s)	680, 821
PceI	AGGCCT	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	4 cut(s)	423, 781, 968, 1031
PfoI	TCCNGGA	2 cut(s)	378, 408
PkrI	GCNGC	4 cut(s)	104, 116, 795, 907
PleI	GAGTC	3 cut(s)	83, 721, 818
PpsI	GAGTC	3 cut(s)	83, 721, 818
PpuMI	RGGWCCY	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	3 cut(s)	582, 844, 961
PspFI	CCCAGC	1 cut(s)	614
PspGI	CCWGG	3 cut(s)	582, 844, 961
PspN4I	GGNNCC	4 cut(s)	247, 408, 438, 922
PspPI	GGNCC	5 cut(s)	246, 406, 834, 1064, 1099
PspPPI	RGGWCCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
RseI	CAYNNNNRTG	1 cut(s)	1059
SaqAI	TTAA	9 cut(s)	180, 309, 357, 366, 396, 447, 456, 555, 609
SatI	GCNGC	4 cut(s)	103, 115, 794, 906
Sau3AI	GATC	3 cut(s)	93, 598, 931
Sau96I	GGNCC	5 cut(s)	246, 406, 834, 1064, 1099
SchI	GAGTC	3 cut(s)	83, 722, 818
ScrFI	CCNGG	5 cut(s)	380, 410, 584, 846, 963
SfaNI	GCATC	2 cut(s)	118, 504
SinI	GGWCC	2 cut(s)	246, 406
SmiMI	CAYNNNNRTG	1 cut(s)	1059
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	1 cut(s)	1002
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	5 cut(s)	378, 408, 582, 844, 961
StyI	CCWWGG	2 cut(s)	282, 889
TaaI	ACNGT	1 cut(s)	821
TaiI	ACGT	2 cut(s)	675, 817
TaqI	TCGA	2 cut(s)	92, 144
TfiI	GAWTC	4 cut(s)	423, 781, 968, 1031
Tru1I	TTAA	9 cut(s)	180, 309, 357, 366, 396, 447, 456, 555, 609
Tru9I	TTAA	9 cut(s)	180, 309, 357, 366, 396, 447, 456, 555, 609
TscAI	CASTG	1 cut(s)	1026
TseFI	GTSAC	2 cut(s)	680, 821
TseI	GCWGC	4 cut(s)	102, 114, 793, 905
Tsp45I	GTSAC	2 cut(s)	680, 821
TspDTI	ATGAA	4 cut(s)	234, 474, 744, 1040
TspGWI	ACGGA	2 cut(s)	70, 1064
TspRI	CASTG	1 cut(s)	1026
VpaK11BI	GGWCC	2 cut(s)	246, 406
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	6 cut(s)	169, 293, 519, 689, 894, 1070
XcmI	CCANNNNNNNNNTGG	1 cut(s)	887
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	1 cut(s)	1002
ZraI	GACGTC	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.