Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011698

Physical Location & Seq

Genomic Coordinates Reverse (-)

12183820 .. 12186249

Gene Structure 2430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G123200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGAACAACAACAACCAGTCGTTTTGGCAATTCAGCGATCAGCTTCGTGTTCAAGGCACCAACTTTGCAAATCTCACAGTTAATGATTCGATTTGGAGCAATTCGTACAGCAAGAGGCCTGATGAAAGGAGAAATTTCGATATAAAGGTAGGCGGCGATGTCAGTCCTCTGATCAATTTGACCCCAAAAGGGTCTGATTTCAATGGCTTCAACGACTCTTGGGTCGACAATCTGAAGCCAAAAGGGTCCTCTGACTCCAACGGCTCCAACGATGGCTGGAACAGCTTCAAGCCAAAAGCTTCAGAGCTCAACAACGGCTTCAACGACAGATGGAACAATTTCAAGCCAAAAGCTTCAGAATTTAACGCTTTTAACGAGGGCTGGAAGCTTGGTGCTGCTGCTGCTGCTGGGCCGGTTCTTGGCGGCGGCTCGCAGCTCAATGGCGGCTTCAACAAGGGGATTTACTCCAAGCCTGCAATTTACAACAACAACAACAACAACATGGTCAATTTGAAGCCCTACAAGAACAAGGCTCATGAGGAAGATCTTGTTCATGGCGGCAAAGTTGGGAAGAAGAACAACAACAATTCTAGCAAGAAGAAAGCTGGTGGAGATGACAACAACAAGGACAGCAAGGGCGCTGTGGACAAAAGGTTCAAGACTCTGCCACCAGCTGAGTCTTTGCCTAGAAATGAAACCATTGGTGGATATATCTTTGTCTGCAACAATGATACCATGCAAGAAAATCTCAAGAGGCAGCTTTTTGGTTTGCCTCCACGTTATCGTGATTCAGTGAGGGCGATAACTCCGGGGTTGCCCCTCTTCCTCTACAACTACTCCACCCACCAACTCCATGGAATTTTTGAGGCTGCAAGTTTTGGAGGCACCAACTTTGATCCAACGGCCTGGGAGGACAAGAAGTGCCCTGGCGAGTCACGTTTCCCAGCTCAGGTTCGAGTTTTTACCAGGAAAGTTTGTGAACCACTTGAGGAAGACTCATTCAGGCCAATTCTTCACCACTACGATGGCCCTAAATTCAGGCTTGAACTTAGTGTACCAGAGGCGCTGTCTCTGTTGGATATATTTGCAGACCAGAACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

369

Amino Acids

41.04

Weight (kDa)

8.73

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42050
fragaria_vesca	FvH4_5g04970
malus_domestica	MD06G1110600.v1.1 MD14G1131300.v1.1
prunus_persica	Prupe.5G123200_v2.0.a1 Prupe.5G123200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194091
rosa_laevigata	RLG00000004218
rosa_multiflora	Rmu_co8036242.1_g000001 Rmu_co8391571.1_g000001 Rmu_sc0003468.1_g000005 Rmu_sc0009433.1_g000003
rosa_roxburghii	Rroxscaffold_3G00261560
rosa_rugosa	Rorug07G0013700
rosa_samantha	Rh7AG140800 Rh7BG141500 Rh7CG144900 Rh7DG142300
rosa_wichuraiana	Rw7G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB1I	GGYRCC	2 cut(s)	59, 887
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	5 cut(s)	156, 426, 429, 447, 561
AclWI	GGATC	1 cut(s)	893
AcsI	RAATTY	4 cut(s)	136, 362, 861, 1037
AcuI	CTGAAG	3 cut(s)	257, 288, 342
AfaI	GTAC	2 cut(s)	110, 1059
AfiI	CCNNNNNNNGG	3 cut(s)	192, 422, 952
AjnI	CCWGG	3 cut(s)	908, 928, 968
AloI	GAACNNNNNNTCC	2 cut(s)	641, 673
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	1077
AlwI	GGATC	1 cut(s)	893
AoxI	GGCC	5 cut(s)	119, 413, 906, 1007, 1030
ApeKI	GCWGC	7 cut(s)	398, 401, 404, 407, 436, 760, 872
ApoI	RAATTY	4 cut(s)	136, 362, 861, 1037
Asp700I	GAANNNNTTC	2 cut(s)	287, 341
AspLEI	GCGC	2 cut(s)	644, 1069
AspS9I	GGNCC	3 cut(s)	249, 413, 1031
AsuC2I	CCSGG	1 cut(s)	813
AsuHPI	GGTGA	1 cut(s)	1010
AvaII	GGWCC	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	929
BanI	GGYRCC	2 cut(s)	59, 887
BanII	GRGCYC	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	1002
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	7 cut(s)	385, 388, 391, 394, 448, 772, 859
BccI	CCATC	3 cut(s)	269, 327, 1022
BceAI	ACGGC	3 cut(s)	280, 334, 921
BciT130I	CCWGG	3 cut(s)	910, 930, 970
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	813
BcoDI	GTCTC	1 cut(s)	1077
BfaI	CTAG	2 cut(s)	594, 690
BfoI	RGCGCY	2 cut(s)	645, 1070
BglII	AGATCT	1 cut(s)	547
Bme1390I	CCNGG	4 cut(s)	813, 910, 930, 970
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	3 cut(s)	249, 413, 1031
BmiI	GGNNCC	4 cut(s)	61, 250, 268, 889
BmrFI	CCNGG	4 cut(s)	813, 910, 930, 970
BpiI	GAAGAC	1 cut(s)	1002
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
Bpu10I	CCTNAGC	1 cut(s)	951
BpuEI	CTTGAG	2 cut(s)	737, 1010
BpuMI	CCSGG	1 cut(s)	813
BsaJI	CCNNGG	4 cut(s)	812, 856, 909, 928
BsaXI	ACNNNNNCTCC	2 cut(s)	824, 854
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 422, 952
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	19
BseBI	CCWGG	3 cut(s)	910, 930, 970
BseDI	CCNNGG	4 cut(s)	812, 856, 909, 928
BseLI	CCNNNNNNNGG	3 cut(s)	192, 422, 952
BseMII	CTCAG	2 cut(s)	669, 965
BseNI	ACTGG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	929
BseXI	GCAGC	7 cut(s)	385, 388, 391, 394, 448, 772, 859
BseYI	CCCAGC	2 cut(s)	410, 946
BshFI	GGCC	5 cut(s)	121, 415, 908, 1009, 1032
BshNI	GGYRCC	2 cut(s)	59, 887
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	2 cut(s)	416, 812
BslI	CCNNNNNNNGG	3 cut(s)	192, 422, 952
BsmAI	GTCTC	1 cut(s)	1077
BsnI	GGCC	5 cut(s)	121, 415, 908, 1009, 1032
Bsp1286I	GDGCHC	2 cut(s)	312, 929
Bsp143I	GATC	4 cut(s)	40, 174, 547, 898
Bsp19I	CCATGG	1 cut(s)	856
BspACI	CCGC	5 cut(s)	156, 426, 429, 447, 561
BspANI	GGCC	5 cut(s)	121, 415, 908, 1009, 1032
BspCNI	CTCAG	2 cut(s)	670, 964
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	4 cut(s)	61, 250, 268, 889
BspPI	GGATC	1 cut(s)	893
BspT107I	GGYRCC	2 cut(s)	59, 887
BsrFI	RCCGGY	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	4 cut(s)	812, 856, 909, 928
BssMI	GATC	4 cut(s)	40, 174, 547, 898
BssT1I	CCWWGG	1 cut(s)	856
Bst2UI	CCWGG	3 cut(s)	910, 930, 970
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	830
BstC8I	GCNNGC	2 cut(s)	434, 477
BstDEI	CTNAG	3 cut(s)	678, 951, 1052
BstDSI	CCRYGG	1 cut(s)	856
BstH2I	RGCGCY	2 cut(s)	645, 1070
BstHHI	GCGC	2 cut(s)	644, 1069
BstKTI	GATC	4 cut(s)	43, 177, 550, 901
BstMAI	GTCTC	1 cut(s)	1077
BstMBI	GATC	4 cut(s)	40, 174, 547, 898
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 404, 407
BstNI	CCWGG	3 cut(s)	910, 930, 970
BstSCI	CCNGG	4 cut(s)	811, 908, 928, 968
BstSLI	GKGCMC	1 cut(s)	929
BstV1I	GCAGC	7 cut(s)	385, 388, 391, 394, 448, 772, 859
BstV2I	GAAGAC	1 cut(s)	1002
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	3 cut(s)	857, 909, 1028
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	5 cut(s)	121, 415, 908, 1009, 1032
BtgI	CCRYGG	1 cut(s)	856
BtgZI	GCGATG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	801
Cac8I	GCNNGC	2 cut(s)	434, 477
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	2 cut(s)	644, 1069
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	249, 413, 1031
Csp6I	GTAC	2 cut(s)	109, 1058
CviAII	CATG	5 cut(s)	505, 539, 557, 739, 857
CviQI	GTAC	2 cut(s)	109, 1058
DdeI	CTNAG	3 cut(s)	678, 951, 1052
DpnI	GATC	4 cut(s)	42, 176, 549, 900
DpnII	GATC	4 cut(s)	40, 174, 547, 898
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	1 cut(s)	830
EarI	CTCTTC	1 cut(s)	830
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	856
Eco147I	AGGCCT	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	3 cut(s)	257, 288, 342
EcoICRI	GAGCTC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRII	CCWGG	3 cut(s)	908, 928, 968
EcoT14I	CCWWGG	1 cut(s)	856
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	856
FaeI	CATG	5 cut(s)	508, 542, 560, 742, 860
FaiI	YATR	8 cut(s)	146, 506, 540, 558, 714, 740, 858, 1085
FatI	CATG	5 cut(s)	504, 538, 556, 738, 856
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	312
FspBI	CTAG	2 cut(s)	594, 690
GlaI	GCGC	2 cut(s)	643, 1068
GsaI	CCCAGC	2 cut(s)	414, 950
HaeII	RGCGCY	2 cut(s)	645, 1070
HaeIII	GGCC	5 cut(s)	121, 415, 908, 1009, 1032
HapII	CCGG	2 cut(s)	416, 812
HhaI	GCGC	2 cut(s)	644, 1069
Hin1II	CATG	5 cut(s)	508, 542, 560, 742, 860
Hin6I	GCGC	2 cut(s)	642, 1067
HinP1I	GCGC	2 cut(s)	642, 1067
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	3 cut(s)	300, 354, 389
HinfI	GANTC	8 cut(s)	89, 218, 257, 664, 680, 791, 935, 998
HpaII	CCGG	2 cut(s)	416, 812
HphI	GGTGA	1 cut(s)	1010
Hpy166II	GTNNAC	4 cut(s)	229, 649, 983, 1058
Hpy188I	TCNGA	6 cut(s)	174, 199, 237, 256, 307, 361
Hpy188III	TCNNGA	4 cut(s)	539, 661, 754, 788
Hpy8I	GTNNAC	4 cut(s)	229, 649, 983, 1058
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	2 cut(s)	781, 940
HpyCH4V	TGCA	6 cut(s)	71, 479, 726, 742, 875, 1091
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 404, 407
HpyF3I	CTNAG	3 cut(s)	678, 951, 1052
HpySE526I	ACGT	2 cut(s)	781, 940
Hsp92II	CATG	5 cut(s)	508, 542, 560, 742, 860
HspAI	GCGC	2 cut(s)	642, 1067
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	40, 174, 547, 898
LmnI	GCTCC	2 cut(s)	99, 272
Lsp1109I	GCAGC	7 cut(s)	385, 388, 391, 394, 448, 772, 859
MaeI	CTAG	2 cut(s)	594, 690
MaeII	ACGT	2 cut(s)	781, 940
MaeIII	GTNAC	1 cut(s)	936
MalI	GATC	4 cut(s)	42, 176, 549, 900
MboI	GATC	4 cut(s)	40, 174, 547, 898
MboII	GAAGA	7 cut(s)	557, 586, 589, 613, 817, 1007, 1007
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	2 cut(s)	312, 929
MlyI	GAGTC	6 cut(s)	212, 251, 658, 689, 944, 992
MmeI	TCCRAC	4 cut(s)	285, 294, 926, 1059
MroXI	GAANNNNTTC	2 cut(s)	287, 341
MseI	TTAA	3 cut(s)	84, 366, 375
MslI	CAYNNNNRTG	1 cut(s)	1026
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	2 cut(s)	416, 812
MspR9I	CCNGG	4 cut(s)	813, 910, 930, 970
MvaI	CCWGG	3 cut(s)	910, 930, 970
MwoI	GCNNNNNNNGC	3 cut(s)	285, 404, 407
NciI	CCSGG	1 cut(s)	813
NcoI	CCATGG	1 cut(s)	856
NdeII	GATC	4 cut(s)	40, 174, 547, 898
NlaIII	CATG	5 cut(s)	508, 542, 560, 742, 860
NlaIV	GGNNCC	4 cut(s)	61, 250, 268, 889
NmuCI	GTSAC	1 cut(s)	936
PagI	TCATGA	1 cut(s)	538
PceI	AGGCCT	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	3 cut(s)	270, 324, 375
PdmI	GAANNNNTTC	2 cut(s)	287, 341
PfeI	GAWTC	2 cut(s)	89, 791
PleI	GAGTC	6 cut(s)	212, 251, 658, 688, 943, 992
PpsI	GAGTC	6 cut(s)	212, 251, 658, 688, 943, 992
PpuMI	RGGWCCY	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	908, 928, 968
PspFI	CCCAGC	2 cut(s)	410, 946
PspGI	CCWGG	3 cut(s)	908, 928, 968
PspN4I	GGNNCC	4 cut(s)	61, 250, 268, 889
PspPI	GGNCC	3 cut(s)	249, 413, 1031
PspPPI	RGGWCCY	1 cut(s)	249
PsrI	GAACNNNNNNTAC	2 cut(s)	1041, 1073
PsuI	RGATCY	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	2 cut(s)	110, 1059
RsaNI	GTAC	2 cut(s)	109, 1058
RseI	CAYNNNNRTG	1 cut(s)	1026
SacI	GAGCTC	1 cut(s)	312
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	84, 366, 375
Sau3AI	GATC	4 cut(s)	40, 174, 547, 898
Sau96I	GGNCC	3 cut(s)	249, 413, 1031
SchI	GAGTC	6 cut(s)	212, 251, 658, 689, 944, 992
ScrFI	CCNGG	4 cut(s)	813, 910, 930, 970
SduI	GDGCHC	2 cut(s)	312, 929
SinI	GGWCC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	1026
SmlI	CTYRAG	2 cut(s)	752, 989
SmoI	CTYRAG	2 cut(s)	752, 989
SseBI	AGGCCT	1 cut(s)	121
SsiI	CCGC	5 cut(s)	156, 426, 429, 447, 561
SspMI	CTAG	2 cut(s)	594, 690
SstI	GAGCTC	1 cut(s)	312
StuI	AGGCCT	1 cut(s)	121
StyD4I	CCNGG	4 cut(s)	811, 908, 928, 968
StyI	CCWWGG	1 cut(s)	856
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	2 cut(s)	784, 943
TaqI	TCGA	4 cut(s)	92, 141, 228, 958
TauI	GCSGC	5 cut(s)	159, 429, 432, 450, 564
TfiI	GAWTC	2 cut(s)	89, 791
Tru1I	TTAA	3 cut(s)	84, 366, 375
Tru9I	TTAA	3 cut(s)	84, 366, 375
TscAI	CASTG	1 cut(s)	801
TseFI	GTSAC	1 cut(s)	936
TseI	GCWGC	7 cut(s)	398, 401, 404, 407, 436, 760, 872
Tsp45I	GTSAC	1 cut(s)	936
TspDTI	ATGAA	3 cut(s)	141, 545, 711
TspRI	CASTG	1 cut(s)	801
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	4 cut(s)	136, 362, 861, 1037
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmiI	GTMKAC	1 cut(s)	228
XmnI	GAANNNNTTC	2 cut(s)	287, 341
XspI	CTAG	2 cut(s)	594, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.