Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009209

Physical Location & Seq

Genomic Coordinates Reverse (-)

16835233 .. 16836895

Gene Structure 1663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAAGCTAGACTCTCCGAAACTCTTGGCCTCCCATCTCCAAATCTTAATCACTGCCATTTTCCCAACGAGTTCAATTCTCTCTTCACTCATTTCTCCGATCTCACCTCCGTCCAAAGCCCTATCGTCAGAAACCCTAAACTCAAAACCAAATCCTCTCAAAAACCCCCAAAATTTTCAGCAAATTTCAGAAGATCCGACCCACCATTTGCATCAACATCAATCTCGGATCCAACCCACGAAAAACCCGGACCCGAATTCCTGAAATGGATCAAACCCGCATCACGAAGCAGTCCAAGAATTCAAACACTCATCAAACAACTCTCCGTCTGGGAACGTGCCATCATCGGTGCAGGAGCCGGTGGACTCGCCGGAGCTTTCACATACGTTACTCTTCTCCCACTTGACGCAATCAAAACCAAGCTTCAAACCAAAGGCGCTTCTCAGGTTTATAGTAACACATTTGATGCTATAGTGAAAACCTTTCAAGCTAAAGGTATATTAGGTTTCTATAGTGGTGTCTCCGCCGTGATTGTTGGCTCTACGTTTTCCTCCGCCGTGTATTTCGGTACTTGTGAGTTTGGTAAGTCTCTGCTCTCTAAGTTCCCTGATTTTCCGACGGTTTTAATCCCGCCTACTGCTGGTGCTATGGGAAACATAATCTCTTCAGCTATAATGGTTCCTAAAGAGCTCATTACACAGAGAATGCAAGCTGGAGCTAGTGGGAGATCTTATCAAGTTTTACTTAAGATACTTGAGAAAGATGGAATCTTGGGGCTTTACGCCGGTTATTCGGCTACATTGTTGAGGAATTTACCCGCTGGTGTACTCAGTTATTCGTCGTTTGAGTATCTGAAAGCCGCGGTTTTGGAGAAAACGAAGCAGAGCCATCTTGAGCCTTTGCAGAGTGTTTGTTGCGGTGCGTTGGCTGGTGCGATATCGGCTTCGATAACTACGCCGTTAGATGTTGTGAAGACTAGGCTGATGACACAGATTCATGTGGAGGCTGTGGATAAACTCGGTGGTGCTATGTATACTGGTGTTGCTGGGACAGTGAAGCAGATATTGACAGAGGAAGGTTGGGTTGGTTTTACCCGCGGCATGGGACCTCGAGTTGTTCACAGCGCTTGTTTCTCTGCGATCGGTTATTTTGCCTTTGAGACTGCTAGGCTTACAATCTTGAATGAATATTTGAAAAGGAAAGAAGAGTCTGAAGCTAACGTTGCTGCTGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

412

Amino Acids

44.36

Weight (kDa)

9.37

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	118 - 201	6.3e-18	Mitochondrial carrier protein
Mito_carr	PF00153	213 - 291	2.6e-12	Mitochondrial carrier protein
Mito_carr	PF00153	297 - 394	1e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42130
fragaria_vesca	FvH4_2g14300 FvH4_2g14300
malus_domestica	MD05G1019200.v1.1 MD10G1020700.v1.1
prunus_persica	Prupe.8G024200_v2.0.a1 Prupe.8G024200_v2.0.a1
pyrus_communis	pycom05g01120 pycom10g01330
rosa_chinensis	RchiOBHm_Chr6g0276601
rosa_laevigata	RLG00000013387
rosa_multiflora	Rmu_sc0000969.1_g000001 Rmu_sc0028629.1_g000001 Rmu_sc0042856.1_g000001 Rmu_ssc0000059.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192160
rosa_rugosa	Rorug06G0102000
rosa_samantha	Rh6AG212700 Rh6BG217700 Rh6CG220000 Rh6DG209800
rosa_wichuraiana	Rw6G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1034
AccII	CGCG	2 cut(s)	863, 1098
AclI	AACGTT	1 cut(s)	1221
AclWI	GGATC	4 cut(s)	189, 224, 237, 278
AcsI	RAATTY	5 cut(s)	173, 184, 257, 300, 811
AcuI	CTGAAG	2 cut(s)	651, 1233
AfaI	GTAC	2 cut(s)	571, 828
AfeI	AGCGCT	1 cut(s)	1126
AfiI	CCNNNNNNNGG	2 cut(s)	641, 1102
AflII	CTTAAG	1 cut(s)	746
AgsI	TTSAA	6 cut(s)	76, 305, 428, 488, 1183, 1195
AjuI	GAANNNNNNNTTGG	2 cut(s)	1068, 1100
AluBI	AGCT	9 cut(s)	8, 377, 424, 491, 671, 691, 713, 719, 1217
AluI	AGCT	9 cut(s)	8, 377, 424, 491, 671, 691, 713, 719, 1217
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	3 cut(s)	526, 594, 1154
AlwI	GGATC	4 cut(s)	189, 224, 237, 278
Ama87I	CYCGRG	1 cut(s)	1110
Aor51HI	AGCGCT	1 cut(s)	1126
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	1226
ApoI	RAATTY	5 cut(s)	173, 184, 257, 300, 811
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspLEI	GCGC	2 cut(s)	440, 1127
AspS9I	GGNCC	2 cut(s)	251, 1106
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	1110
AvaII	GGWCC	2 cut(s)	251, 1106
BamHI	GGATCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	1 cut(s)	1213
BccI	CCATC	4 cut(s)	43, 350, 758, 897
BceAI	ACGGC	3 cut(s)	512, 542, 943
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	3 cut(s)	526, 594, 1154
BfaI	CTAG	4 cut(s)	9, 720, 978, 1167
BfmI	CTRYAG	2 cut(s)	471, 511
BfoI	RGCGCY	2 cut(s)	441, 1128
BfrI	CTTAAG	1 cut(s)	746
BglII	AGATCT	1 cut(s)	728
BisI	GCNGC	3 cut(s)	861, 1099, 1227
BlsI	GCNGC	3 cut(s)	862, 1100, 1228
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	2 cut(s)	251, 1106
BmeT110I	CYCGRG	1 cut(s)	1110
BmgT120I	GGNCC	2 cut(s)	251, 1106
BmiI	GGNNCC	5 cut(s)	231, 253, 358, 681, 1107
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	221, 290, 457
BpiI	GAAGAC	1 cut(s)	980
BpmI	CTGGAG	1 cut(s)	735
BpuEI	CTTGAG	2 cut(s)	776, 914
BpuMI	CCSGG	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	861, 1096
Bsc4I	CCNNNNNNNGG	2 cut(s)	641, 1102
Bse118I	RCCGGY	2 cut(s)	359, 785
Bse1I	ACTGG	1 cut(s)	1042
BseDI	CCNNGG	2 cut(s)	861, 1096
BseLI	CCNNNNNNNGG	2 cut(s)	641, 1102
BseMII	CTCAG	2 cut(s)	458, 844
BseNI	ACTGG	1 cut(s)	1042
BseXI	GCAGC	1 cut(s)	1213
BseYI	CCCAGC	1 cut(s)	1046
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	2 cut(s)	863, 1098
Bsh1285I	CGRYCG	1 cut(s)	1143
BshFI	GGCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	1143
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	1110
BsiSI	CCGG	4 cut(s)	249, 360, 372, 786
BslFI	GGGAC	2 cut(s)	1063, 1119
BslI	CCNNNNNNNGG	2 cut(s)	641, 1102
BsmAI	GTCTC	3 cut(s)	526, 594, 1154
BsmFI	GGGAC	2 cut(s)	1063, 1119
BsmI	GAATGC	1 cut(s)	711
BsnI	GGCC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	1110
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	6 cut(s)	100, 194, 229, 270, 728, 1140
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	2 cut(s)	457, 843
BspFNI	CGCG	2 cut(s)	863, 1098
BspLI	GGNNCC	5 cut(s)	231, 253, 358, 681, 1107
BspPI	GGATC	4 cut(s)	189, 224, 237, 278
BspTI	CTTAAG	1 cut(s)	746
BsrFI	RCCGGY	2 cut(s)	359, 785
BsrI	ACTGG	1 cut(s)	1042
BssAI	RCCGGY	2 cut(s)	359, 785
BssECI	CCNNGG	2 cut(s)	861, 1096
BssMI	GATC	6 cut(s)	100, 194, 229, 270, 728, 1140
BssNAI	GTATAC	1 cut(s)	1035
Bst1107I	GTATAC	1 cut(s)	1035
Bst4CI	ACNGT	2 cut(s)	622, 1054
Bst6I	CTCTTC	4 cut(s)	89, 399, 670, 1200
BstAFI	CTTAAG	1 cut(s)	746
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	3 cut(s)	444, 600, 830
BstDSI	CCRYGG	2 cut(s)	861, 1096
BstFNI	CGCG	2 cut(s)	863, 1098
BstH2I	RGCGCY	2 cut(s)	441, 1128
BstHHI	GCGC	2 cut(s)	440, 1127
BstKTI	GATC	6 cut(s)	103, 197, 232, 273, 731, 1143
BstMAI	GTCTC	3 cut(s)	526, 594, 1154
BstMBI	GATC	6 cut(s)	100, 194, 229, 270, 728, 1140
BstMCI	CGRYCG	1 cut(s)	1143
BstMWI	GCNNNNNNNGC	2 cut(s)	941, 1223
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	2 cut(s)	471, 511
BstUI	CGCG	2 cut(s)	863, 1098
BstV1I	GCAGC	1 cut(s)	1213
BstV2I	GAAGAC	1 cut(s)	980
BstX2I	RGATCY	3 cut(s)	194, 229, 728
BstYI	RGATCY	3 cut(s)	194, 229, 728
BstZ17I	GTATAC	1 cut(s)	1035
BsuRI	GGCC	1 cut(s)	30
BtgI	CCRYGG	2 cut(s)	861, 1096
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 1059
Cac8I	GCNNGC	1 cut(s)	711
CfoI	GCGC	2 cut(s)	440, 1127
Cfr10I	RCCGGY	2 cut(s)	359, 785
Cfr13I	GGNCC	2 cut(s)	251, 1106
Cfr42I	CCGCGG	2 cut(s)	864, 1099
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	570, 827
CviAII	CATG	2 cut(s)	998, 1102
CviQI	GTAC	2 cut(s)	570, 827
DdeI	CTNAG	3 cut(s)	444, 600, 830
DpnI	GATC	6 cut(s)	102, 196, 231, 272, 730, 1142
DpnII	GATC	6 cut(s)	100, 194, 229, 270, 728, 1140
Eam1104I	CTCTTC	4 cut(s)	89, 399, 670, 1200
EarI	CTCTTC	4 cut(s)	89, 399, 670, 1200
EciI	GGCGGA	2 cut(s)	514, 544
Ecl136II	GAGCTC	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	939
Eco47I	GGWCC	2 cut(s)	251, 1106
Eco47III	AGCGCT	1 cut(s)	1126
Eco53kI	GAGCTC	1 cut(s)	691
Eco57I	CTGAAG	2 cut(s)	651, 1233
Eco88I	CYCGRG	1 cut(s)	1110
EcoICRI	GAGCTC	1 cut(s)	691
EcoO109I	RGGNCCY	1 cut(s)	1106
EcoRI	GAATTC	2 cut(s)	257, 300
EcoRV	GATATC	1 cut(s)	939
EcoT38I	GRGCYC	1 cut(s)	693
FaeI	CATG	2 cut(s)	1001, 1105
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	2 cut(s)	1063, 1119
FatI	CATG	2 cut(s)	997, 1101
FauI	CCCGC	4 cut(s)	286, 639, 826, 1103
FblI	GTMKAC	1 cut(s)	1034
Fnu4HI	GCNGC	3 cut(s)	861, 1099, 1227
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	3 cut(s)	861, 1099, 1227
FspBI	CTAG	4 cut(s)	9, 720, 978, 1167
GlaI	GCGC	2 cut(s)	439, 1126
GluI	GCNGC	3 cut(s)	861, 1099, 1227
GsaI	CCCAGC	1 cut(s)	1050
GsuI	CTGGAG	1 cut(s)	735
HaeII	RGCGCY	2 cut(s)	441, 1128
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	4 cut(s)	249, 360, 372, 786
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	2 cut(s)	440, 1127
Hin1II	CATG	2 cut(s)	1001, 1105
Hin6I	GCGC	2 cut(s)	438, 1125
HinP1I	GCGC	2 cut(s)	438, 1125
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	6 cut(s)	12, 366, 768, 994, 1208, 1232
HpaII	CCGG	4 cut(s)	249, 360, 372, 786
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	4 cut(s)	365, 827, 1035, 1120
Hpy188I	TCNGA	9 cut(s)	19, 100, 131, 191, 199, 229, 618, 855, 1213
Hpy188III	TCNNGA	5 cut(s)	262, 285, 893, 1180, 1236
Hpy8I	GTNNAC	4 cut(s)	365, 827, 1035, 1120
Hpy99I	CGWCG	2 cut(s)	622, 844
HpyAV	CCTTC	1 cut(s)	1070
HpyCH4III	ACNGT	2 cut(s)	622, 1054
HpyCH4IV	ACGT	4 cut(s)	337, 387, 545, 1221
HpyCH4V	TGCA	4 cut(s)	212, 353, 709, 904
HpyF10VI	GCNNNNNNNGC	2 cut(s)	941, 1223
HpyF3I	CTNAG	3 cut(s)	444, 600, 830
HpySE526I	ACGT	4 cut(s)	337, 387, 545, 1221
Hsp92II	CATG	2 cut(s)	1001, 1105
HspAI	GCGC	2 cut(s)	438, 1125
KspI	CCGCGG	2 cut(s)	864, 1099
Kzo9I	GATC	6 cut(s)	100, 194, 229, 270, 728, 1140
LmnI	GCTCC	3 cut(s)	356, 374, 716
Lsp1109I	GCAGC	1 cut(s)	1213
LweI	GCATC	3 cut(s)	221, 290, 457
MaeI	CTAG	4 cut(s)	9, 720, 978, 1167
MaeII	ACGT	4 cut(s)	337, 387, 545, 1221
MaeIII	GTNAC	2 cut(s)	388, 455
MalI	GATC	6 cut(s)	102, 196, 231, 272, 730, 1142
MboI	GATC	6 cut(s)	100, 194, 229, 270, 728, 1140
MboII	GAAGA	6 cut(s)	76, 204, 386, 657, 985, 1217
MflI	RGATCY	3 cut(s)	194, 229, 728
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	6 cut(s)	76, 173, 184, 257, 300, 811
MlyI	GAGTC	3 cut(s)	6, 360, 1217
MmeI	TCCRAC	3 cut(s)	222, 257, 641
MnlI	CCTC	8 cut(s)	41, 118, 166, 562, 801, 997, 1066, 1119
MseI	TTAA	3 cut(s)	48, 626, 747
MspA1I	CMGCKG	3 cut(s)	821, 863, 1098
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	4 cut(s)	249, 360, 372, 786
MspR9I	CCNGG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	711
MvnI	CGCG	2 cut(s)	863, 1098
MwoI	GCNNNNNNNGC	2 cut(s)	941, 1223
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	6 cut(s)	100, 194, 229, 270, 728, 1140
NlaIII	CATG	2 cut(s)	1001, 1105
NlaIV	GGNNCC	5 cut(s)	231, 253, 358, 681, 1107
PaeR7I	CTCGAG	1 cut(s)	1110
PctI	GAATGC	1 cut(s)	711
PfeI	GAWTC	3 cut(s)	768, 994, 1232
PkrI	GCNGC	3 cut(s)	862, 1100, 1228
Ple19I	CGATCG	1 cut(s)	1143
PleI	GAGTC	3 cut(s)	6, 360, 1216
PpsI	GAGTC	3 cut(s)	6, 360, 1216
PpuMI	RGGWCCY	1 cut(s)	1106
Psp124BI	GAGCTC	1 cut(s)	693
Psp1406I	AACGTT	1 cut(s)	1221
Psp5II	RGGWCCY	1 cut(s)	1106
PspFI	CCCAGC	1 cut(s)	1046
PspN4I	GGNNCC	5 cut(s)	231, 253, 358, 681, 1107
PspPI	GGNCC	2 cut(s)	251, 1106
PspPPI	RGGWCCY	1 cut(s)	1106
PspXI	VCTCGAGB	1 cut(s)	1110
PsuI	RGATCY	3 cut(s)	194, 229, 728
PvuI	CGATCG	1 cut(s)	1143
RsaI	GTAC	2 cut(s)	571, 828
RsaNI	GTAC	2 cut(s)	570, 827
SacI	GAGCTC	1 cut(s)	693
SacII	CCGCGG	2 cut(s)	864, 1099
SaqAI	TTAA	3 cut(s)	48, 626, 747
SatI	GCNGC	3 cut(s)	861, 1099, 1227
Sau3AI	GATC	6 cut(s)	100, 194, 229, 270, 728, 1140
Sau96I	GGNCC	2 cut(s)	251, 1106
SchI	GAGTC	3 cut(s)	6, 360, 1217
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	693
SfaNI	GCATC	3 cut(s)	221, 290, 457
SfcI	CTRYAG	2 cut(s)	471, 511
Sfr274I	CTCGAG	1 cut(s)	1110
Sfr303I	CCGCGG	2 cut(s)	864, 1099
SgrBI	CCGCGG	2 cut(s)	864, 1099
SinI	GGWCC	2 cut(s)	251, 1106
SlaI	CTCGAG	1 cut(s)	1110
SmlI	CTYRAG	4 cut(s)	746, 755, 893, 1110
SmoI	CTYRAG	4 cut(s)	746, 755, 893, 1110
Sse9I	AATT	6 cut(s)	76, 173, 184, 257, 300, 811
SspI	AATATT	1 cut(s)	1190
SspMI	CTAG	4 cut(s)	9, 720, 978, 1167
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	622, 1054
TaiI	ACGT	4 cut(s)	340, 390, 548, 1224
TaqI	TCGA	2 cut(s)	947, 1111
TasI	AATT	6 cut(s)	76, 173, 184, 257, 300, 811
TatI	WGTACW	1 cut(s)	826
TauI	GCSGC	2 cut(s)	863, 1101
TfiI	GAWTC	3 cut(s)	768, 994, 1232
Tru1I	TTAA	3 cut(s)	48, 626, 747
Tru9I	TTAA	3 cut(s)	48, 626, 747
TscAI	CASTG	2 cut(s)	59, 1059
TseI	GCWGC	1 cut(s)	1226
TspDTI	ATGAA	2 cut(s)	986, 1200
TspGWI	ACGGA	2 cut(s)	100, 316
TspRI	CASTG	2 cut(s)	59, 1059
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	2 cut(s)	251, 1106
XapI	RAATTY	5 cut(s)	173, 184, 257, 300, 811
XhoI	CTCGAG	1 cut(s)	1110
XmiI	GTMKAC	1 cut(s)	1034
XspI	CTAG	4 cut(s)	9, 720, 978, 1167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.