Rh6BG217700

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
41051131 .. 41055910
4780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG217700.1

Sequence Viewer

Length: 1119 bp
ATGGAGAGCAGACTCTCCGCCTCTCTTGGCCTCCCCTCTCCAAACCCAGACCACCACCGCCACCACTCTCAAACCTCCGATGACTTCCACAACCTCTTCACCCACTTCGCCTCCCCAACCACATCTCACATCCCATTCTTCGCCTCCACCACCACCGCCACCACCAAATGGGCCTCCAACACCCGCCCGCCCAAGGCCAAGTCCATAATGAAGAACCTCTCCGTCTTCGAGCGGGCCCTCATCGGCGCCGGCGGCGGCGGCATCGCCGGAGCCTTCACCTACTTCTGCCTCCACCCCCTCGACACCATCAAGACCAAGCTCCAGACCAAAGGCGCCTCCGAAGTCTACGCCAACGCCTTCGACGCCGTCGTCAAGACCTTCCAGACCAAGGGCGTTCTGGGGTTTTACAGCGGCATCTCCGCCGTCATCGTCGGCTCCACCGCTTCCTCCGCCGTCTACTTCGGCACCTGCGAGATGGGGAAGTCGTTTCTCTCCAAATTACCCAACTACCCCCCGATCCTCATCCCTCCCACCGCCGGCGCCATGGGCAACATCGTCTCTTCGGCCATAATGGTGCCCAAGGAGCTGATCACGCAGCGGATGCAGGCCGGGGCCAGAGGCAGGTCCTGGCAGGTGTTGCTGAAGATCCTCGAAAACGACGGCGTTTTGGGCCTCTACGCAGGCTACTCCGCAACCTTGCTCAGAAACTTGCCCGCCGGGGTCTTGAGCTACTCTTCCTTCGAGTACTTGAAAGCCGCGGTTCTGAGCAAGACCAACCAGGCCCAAATGGAGCCCATTCAGAGCGTGATTTGCGGCGCCTTGGCCGGAGCTATCTCGGCCTCCATTACGACGCCGCTGGATGTTGTGAAGACGAGGCTGATGACTCAGAATGTGAATAAGGTGGCTGCTTTTGTGCAGAGTGGGGTTTCGGAGACGGTGAAGCAGATTCTGAAAGAAGAAGGGCTGGTGGGATTCACAAGAGGAATGGGGCCGAGGGTTCTTCACAGTGCCTGCTTTTCCGCATTGGGGTACTTTGCTTTCGAGACCGCTAGGCTTGTGATTTTGAATGAGTATATCAAGAGGAAGGAGTTGCAAGAAATTGGTCATGCTCCGGCTTGA

Protein Analysis

372

Amino Acids

39.81

Weight (kDa)

9.52

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 85 - 166 4.5e-19 Mitochondrial carrier protein
Mito_carr PF00153 178 - 255 1.7e-12 Mitochondrial carrier protein
Mito_carr PF00153 263 - 355 3.3e-21 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 476, 622
AasI GACNNNNNNGTC 1 cut(s) 368
Acc36I ACCTGC 3 cut(s) 476, 612, 622
AccB1I GGYRCC 6 cut(s) 245, 332, 464, 539, 574, 815
AccB7I CCANNNNNTGG 1 cut(s) 168
AccBSI CCGCTC 1 cut(s) 232
AccI GTMKAC 2 cut(s) 345, 456
AccII CGCG 1 cut(s) 758
AclWI GGATC 2 cut(s) 511, 640
AcoI YGGCCR 2 cut(s) 564, 822
AcuI CTGAAG 1 cut(s) 662
AcyI GRCGYC 6 cut(s) 246, 333, 363, 540, 816, 851
AfaI GTAC 2 cut(s) 746, 1031
AfiI CCNNNNNNNGG 6 cut(s) 168, 193, 388, 536, 621, 1026
AgsI TTSAA 2 cut(s) 751, 1066
AjnI CCWGG 2 cut(s) 626, 777
AluBI AGCT 4 cut(s) 319, 586, 729, 830
AluI AGCT 4 cut(s) 319, 586, 729, 830
Alw26I GTCTC 3 cut(s) 562, 926, 1037
AlwI GGATC 2 cut(s) 511, 640
AlwNI CAGNNNCTG 3 cut(s) 627, 949, 1011
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 595, 905
AspLEI GCGC 4 cut(s) 248, 335, 542, 818
AspS9I GGNCC 8 cut(s) 171, 234, 235, 612, 624, 670, 781, 989
AsuC2I CCSGG 2 cut(s) 610, 718
AsuHPI GGTGA 3 cut(s) 91, 268, 949
AvaII GGWCC 1 cut(s) 624
BaeGI GKGCMC 2 cut(s) 238, 579
BanI GGYRCC 6 cut(s) 245, 332, 464, 539, 574, 815
BanII GRGCYC 2 cut(s) 238, 795
BbsI GAAGAC 2 cut(s) 217, 875
BbvI GCAGC 2 cut(s) 607, 892
BccI CCATC 2 cut(s) 314, 469
BceAI ACGGC 4 cut(s) 350, 407, 437, 676
BciT130I CCWGG 2 cut(s) 628, 779
BclI TGATCA 1 cut(s) 588
BcnI CCSGG 2 cut(s) 610, 718
BcoDI GTCTC 3 cut(s) 562, 926, 1037
BfaI CTAG 1 cut(s) 1050
BfoI RGCGCY 4 cut(s) 249, 336, 543, 819
BfuAI ACCTGC 3 cut(s) 476, 612, 622
BisI GCNGC 9 cut(s) 253, 256, 259, 412, 596, 756, 814, 854, 906
BlsI GCNGC 9 cut(s) 254, 257, 260, 413, 597, 757, 815, 855, 907
BmcAI AGTACT 1 cut(s) 746
Bme1390I CCNGG 4 cut(s) 610, 628, 718, 779
Bme18I GGWCC 1 cut(s) 624
BmgT120I GGNCC 8 cut(s) 171, 234, 235, 612, 624, 670, 781, 989
BmrFI CCNGG 4 cut(s) 610, 628, 718, 779
BmsI GCATC 3 cut(s) 270, 423, 591
BpiI GAAGAC 2 cut(s) 217, 875
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 745
BpuMI CCSGG 2 cut(s) 610, 718
BsaBI GATNNNNATC 1 cut(s) 521
BsaHI GRCGYC 6 cut(s) 246, 333, 363, 540, 816, 851
BsaI GGTCTC 1 cut(s) 1037
BsaJI CCNNGG 9 cut(s) 192, 387, 543, 579, 609, 717, 756, 819, 992
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 6 cut(s) 168, 193, 388, 536, 621, 1026
Bse118I RCCGGY 2 cut(s) 248, 536
Bse8I GATNNNNATC 1 cut(s) 521
BseBI CCWGG 2 cut(s) 628, 779
BseDI CCNNGG 9 cut(s) 192, 387, 543, 579, 609, 717, 756, 819, 992
BseGI GGATG 4 cut(s) 129, 522, 606, 865
BseJI GATNNNNATC 1 cut(s) 521
BseLI CCNNNNNNNGG 6 cut(s) 168, 193, 388, 536, 621, 1026
BseMII CTCAG 3 cut(s) 715, 755, 899
BseSI GKGCMC 2 cut(s) 238, 579
BseXI GCAGC 2 cut(s) 607, 892
BsgI GTGCAG 1 cut(s) 935
Bsh1236I CGCG 1 cut(s) 758
BshNI GGYRCC 6 cut(s) 245, 332, 464, 539, 574, 815
BsiSI CCGG 7 cut(s) 249, 267, 537, 609, 717, 825, 1112
BslI CCNNNNNNNGG 6 cut(s) 168, 193, 388, 536, 621, 1026
BsmAI GTCTC 3 cut(s) 562, 926, 1037
BsmBI CGTCTC 2 cut(s) 562, 926
Bso31I GGTCTC 1 cut(s) 1037
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 3 cut(s) 238, 579, 795
Bsp143I GATC 3 cut(s) 516, 588, 645
Bsp19I CCATGG 1 cut(s) 543
BspCNI CTCAG 3 cut(s) 714, 756, 898
BspFNI CGCG 1 cut(s) 758
BspMI ACCTGC 3 cut(s) 476, 612, 622
BspPI GGATC 2 cut(s) 511, 640
BspT107I GGYRCC 6 cut(s) 245, 332, 464, 539, 574, 815
BspTNI GGTCTC 1 cut(s) 1037
BsrBI CCGCTC 1 cut(s) 232
BsrFI RCCGGY 2 cut(s) 248, 536
BssAI RCCGGY 2 cut(s) 248, 536
BssECI CCNNGG 9 cut(s) 192, 387, 543, 579, 609, 717, 756, 819, 992
BssMI GATC 3 cut(s) 516, 588, 645
BssNI GRCGYC 6 cut(s) 246, 333, 363, 540, 816, 851
BssT1I CCWWGG 5 cut(s) 192, 387, 543, 579, 819
Bst2UI CCWGG 2 cut(s) 628, 779
Bst4CI ACNGT 2 cut(s) 937, 1007
Bst6I CTCTTC 3 cut(s) 101, 565, 739
BstACI GRCGYC 6 cut(s) 246, 333, 363, 540, 816, 851
BstAPI GCANNNNNTGC 2 cut(s) 601, 637
BstC8I GCNNGC 8 cut(s) 188, 234, 250, 538, 606, 682, 714, 1012
BstDEI CTNAG 3 cut(s) 701, 764, 885
BstDSI CCRYGG 2 cut(s) 543, 756
BstF5I GGATG 4 cut(s) 129, 522, 606, 865
BstFNI CGCG 1 cut(s) 758
BstH2I RGCGCY 4 cut(s) 249, 336, 543, 819
BstHHI GCGC 4 cut(s) 248, 335, 542, 818
BstKTI GATC 3 cut(s) 519, 591, 648
BstMAI GTCTC 3 cut(s) 562, 926, 1037
BstMBI GATC 3 cut(s) 516, 588, 645
BstNI CCWGG 2 cut(s) 628, 779
BstSCI CCNGG 4 cut(s) 608, 626, 716, 777
BstSLI GKGCMC 2 cut(s) 238, 579
BstUI CGCG 1 cut(s) 758
BstV1I GCAGC 2 cut(s) 607, 892
BstV2I GAAGAC 2 cut(s) 217, 875
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BtgI CCRYGG 2 cut(s) 543, 756
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 4 cut(s) 129, 522, 606, 865
BtsIMutI CAGTG 1 cut(s) 1012
BveI ACCTGC 3 cut(s) 476, 612, 622
Cac8I GCNNGC 8 cut(s) 188, 234, 250, 538, 606, 682, 714, 1012
CaiI CAGNNNCTG 3 cut(s) 627, 949, 1011
CfoI GCGC 4 cut(s) 248, 335, 542, 818
Cfr10I RCCGGY 2 cut(s) 248, 536
Cfr13I GGNCC 8 cut(s) 171, 234, 235, 612, 624, 670, 781, 989
Cfr42I CCGCGG 1 cut(s) 759
CseI GACGC 2 cut(s) 371, 859
Csp6I GTAC 2 cut(s) 745, 1030
CviAII CATG 2 cut(s) 544, 1106
CviQI GTAC 2 cut(s) 745, 1030
DdeI CTNAG 3 cut(s) 701, 764, 885
DinI GGCGCC 4 cut(s) 247, 334, 541, 817
DpnI GATC 3 cut(s) 518, 590, 647
DpnII GATC 3 cut(s) 516, 588, 645
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
EaeI YGGCCR 2 cut(s) 564, 822
Eam1104I CTCTTC 3 cut(s) 101, 565, 739
EarI CTCTTC 3 cut(s) 101, 565, 739
EciI GGCGGA 3 cut(s) 7, 409, 439
Eco130I CCWWGG 5 cut(s) 192, 387, 543, 579, 819
Eco24I GRGCYC 2 cut(s) 238, 795
Eco31I GGTCTC 1 cut(s) 1037
Eco47I GGWCC 1 cut(s) 624
Eco57I CTGAAG 1 cut(s) 662
EcoO109I RGGNCCY 2 cut(s) 235, 624
EcoRII CCWGG 2 cut(s) 626, 777
EcoT14I CCWWGG 5 cut(s) 192, 387, 543, 579, 819
EcoT38I GRGCYC 2 cut(s) 238, 795
EgeI GGCGCC 4 cut(s) 247, 334, 541, 817
EheI GGCGCC 4 cut(s) 247, 334, 541, 817
ErhI CCWWGG 5 cut(s) 192, 387, 543, 579, 819
Esp3I CGTCTC 2 cut(s) 562, 926
FaeI CATG 2 cut(s) 547, 1109
FaiI YATR 5 cut(s) 206, 545, 569, 1074, 1107
FatI CATG 2 cut(s) 543, 1105
FauI CCCGC 4 cut(s) 191, 195, 225, 721
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 2 cut(s) 345, 456
Fnu4HI GCNGC 9 cut(s) 253, 256, 259, 412, 596, 756, 814, 854, 906
FokI GGATG 4 cut(s) 116, 509, 613, 872
FriOI GRGCYC 2 cut(s) 238, 795
Fsp4HI GCNGC 9 cut(s) 253, 256, 259, 412, 596, 756, 814, 854, 906
FspBI CTAG 1 cut(s) 1050
GlaI GCGC 4 cut(s) 247, 334, 541, 817
GluI GCNGC 9 cut(s) 253, 256, 259, 412, 596, 756, 814, 854, 906
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 4 cut(s) 249, 336, 543, 819
HapII CCGG 7 cut(s) 249, 267, 537, 609, 717, 825, 1112
HgaI GACGC 2 cut(s) 371, 859
HhaI GCGC 4 cut(s) 248, 335, 542, 818
Hin1I GRCGYC 6 cut(s) 246, 333, 363, 540, 816, 851
Hin1II CATG 2 cut(s) 547, 1109
Hin6I GCGC 4 cut(s) 246, 333, 540, 816
HinP1I GCGC 4 cut(s) 246, 333, 540, 816
HinfI GANTC 4 cut(s) 12, 883, 946, 972
HpaII CCGG 7 cut(s) 249, 267, 537, 609, 717, 825, 1112
HphI GGTGA 3 cut(s) 91, 268, 949
Hpy166II GTNNAC 2 cut(s) 346, 457
Hpy188I TCNGA 8 cut(s) 79, 340, 704, 765, 801, 888, 931, 951
Hpy188III TCNNGA 7 cut(s) 310, 322, 373, 382, 724, 1042, 1078
Hpy8I GTNNAC 2 cut(s) 346, 457
Hpy99I CGWCG 5 cut(s) 365, 371, 434, 662, 853
HpyAV CCTTC 6 cut(s) 283, 367, 388, 748, 953, 1078
HpyCH4III ACNGT 2 cut(s) 937, 1007
HpyCH4V TGCA 3 cut(s) 604, 916, 1093
HpyF3I CTNAG 3 cut(s) 701, 764, 885
Hsp92I GRCGYC 6 cut(s) 246, 333, 363, 540, 816, 851
Hsp92II CATG 2 cut(s) 547, 1109
HspAI GCGC 4 cut(s) 246, 333, 540, 816
KasI GGCGCC 4 cut(s) 245, 332, 539, 815
KroI GCCGGC 2 cut(s) 248, 536
KroNI GCCGGC 2 cut(s) 250, 538
Ksp22I TGATCA 1 cut(s) 588
KspI CCGCGG 1 cut(s) 759
Kzo9I GATC 3 cut(s) 516, 588, 645
LmnI GCTCC 7 cut(s) 269, 324, 440, 583, 790, 827, 1114
Lsp1109I GCAGC 2 cut(s) 607, 892
LweI GCATC 3 cut(s) 270, 423, 591
MaeI CTAG 1 cut(s) 1050
MalI GATC 3 cut(s) 518, 590, 647
MbiI CCGCTC 1 cut(s) 232
MboI GATC 3 cut(s) 516, 588, 645
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 3 cut(s) 238, 579, 795
MluCI AATT 2 cut(s) 497, 1098
Mly113I GGCGCC 4 cut(s) 246, 333, 540, 816
MlyI GAGTC 2 cut(s) 6, 877
MmeI TCCRAC 1 cut(s) 201
MreI CGCCGGCG 2 cut(s) 248, 536
MroNI GCCGGC 2 cut(s) 248, 536
MslI CAYNNNNRTG 1 cut(s) 572
MspA1I CMGCKG 4 cut(s) 411, 598, 758, 856
MspI CCGG 7 cut(s) 249, 267, 537, 609, 717, 825, 1112
MspR9I CCNGG 4 cut(s) 610, 628, 718, 779
MvaI CCWGG 2 cut(s) 628, 779
MvnI CGCG 1 cut(s) 758
NaeI GCCGGC 2 cut(s) 250, 538
NarI GGCGCC 4 cut(s) 246, 333, 540, 816
NciI CCSGG 2 cut(s) 610, 718
NcoI CCATGG 1 cut(s) 543
NdeII GATC 3 cut(s) 516, 588, 645
NgoMIV GCCGGC 2 cut(s) 248, 536
NlaIII CATG 2 cut(s) 547, 1109
NmeAIII GCCGAG 2 cut(s) 815, 1017
PaqCI CACCTGC 2 cut(s) 476, 622
PcsI WCGNNNNNNNCGW 2 cut(s) 366, 468
PdiI GCCGGC 2 cut(s) 250, 538
PfeI GAWTC 2 cut(s) 946, 972
PflFI GACNNNGTC 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 168
PkrI GCNGC 9 cut(s) 254, 257, 260, 413, 597, 757, 815, 855, 907
PleI GAGTC 2 cut(s) 6, 877
PluTI GGCGCC 4 cut(s) 249, 336, 543, 819
PpsI GAGTC 2 cut(s) 6, 877
PpuMI RGGWCCY 1 cut(s) 624
Psp5II RGGWCCY 1 cut(s) 624
Psp6I CCWGG 2 cut(s) 626, 777
PspGI CCWGG 2 cut(s) 626, 777
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 8 cut(s) 171, 234, 235, 612, 624, 670, 781, 989
PspPPI RGGWCCY 1 cut(s) 624
PstNI CAGNNNCTG 3 cut(s) 627, 949, 1011
PsuI RGATCY 1 cut(s) 645
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 2 cut(s) 746, 1031
RsaNI GTAC 2 cut(s) 745, 1030
RseI CAYNNNNRTG 1 cut(s) 572
SacII CCGCGG 1 cut(s) 759
SatI GCNGC 9 cut(s) 253, 256, 259, 412, 596, 756, 814, 854, 906
Sau3AI GATC 3 cut(s) 516, 588, 645
Sau96I GGNCC 8 cut(s) 171, 234, 235, 612, 624, 670, 781, 989
ScaI AGTACT 1 cut(s) 746
SchI GAGTC 2 cut(s) 6, 877
ScrFI CCNGG 4 cut(s) 610, 628, 718, 779
SduI GDGCHC 3 cut(s) 238, 579, 795
SfaNI GCATC 3 cut(s) 270, 423, 591
SfoI GGCGCC 4 cut(s) 247, 334, 541, 817
Sfr303I CCGCGG 1 cut(s) 759
SgrAI CRCCGGYG 2 cut(s) 248, 536
SgrBI CCGCGG 1 cut(s) 759
SinI GGWCC 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 572
SmlI CTYRAG 1 cut(s) 724
SmoI CTYRAG 1 cut(s) 724
Sse9I AATT 2 cut(s) 497, 1098
SspDI GGCGCC 4 cut(s) 245, 332, 539, 815
SspMI CTAG 1 cut(s) 1050
StyD4I CCNGG 4 cut(s) 608, 626, 716, 777
StyI CCWWGG 5 cut(s) 192, 387, 543, 579, 819
TaaI ACNGT 2 cut(s) 937, 1007
TaqI TCGA 6 cut(s) 228, 300, 360, 651, 741, 1041
TasI AATT 2 cut(s) 497, 1098
TatI WGTACW 1 cut(s) 744
TauI GCSGC 7 cut(s) 255, 258, 261, 414, 758, 816, 856
TfiI GAWTC 2 cut(s) 946, 972
TscAI CASTG 1 cut(s) 1012
TseI GCWGC 2 cut(s) 595, 905
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 1 cut(s) 1012
Tth111I GACNNNGTC 1 cut(s) 365
Van91I CCANNNNNTGG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 624
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XmiI GTMKAC 2 cut(s) 345, 456
XspI CTAG 1 cut(s) 1050
ZrmI AGTACT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.