pycom05g01120

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
1385075 .. 1386220
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g01120.1

Sequence Viewer

Length: 1146 bp
ATGGAGGGCAGACTCTCAGCCTCTCTGGGCCTCCCCGCACCCAATCAAAACCACCACCTTGAGTCTCCCAATGACTTCCAAAACCTCTTCACCCATTTCATCACTCCAAATTCCCAAACTACCCTCACCCTCACCCCTACCCAAAACCACATCCCTTTCTTTGCCTCCACCTCCTCCACCCCCAATTGGGCCTCCATTACCCGACCCAGTAACCGCCCCAAGACACAAGTCCTGCTCAAGAACCTCACGGTCTTCGAGCGTGCCCTCATCGGCGCAGGCGGCGGTGGTATCGCCGGGGCCTTCACCTACTTCTGCCTCCACCCTCTGGACACCATCAAAACAAAGCTCCAGACCAAAGGCGCCTCAGATATTTACGCAAACACCTTCGATGCAGTCCTCAAGACATTCCAGACCAAGGGCATTTCCGGGTTTTACAGCGGCATCTCCGCCGTCATCGTCGGCTCCAGCGCCTCCTCCGCTGTCTACTTCGGCACCTGCGAACTGGGTAAGTCGGTTCTCTCCAAATTACCCAACTACCCTCCCGTCCTCATCCCTCCCACGGCCGGAGCCATGGGCAACATAGTGTCCTCCGCGATAATGGTGCCCAAGGAGCTCATCACGCAGCGGATGCAGGCCGGGGCCAAGGGGAGGTCGTGGCAGGTGCTGCTGAAGATCCTAGAAAACGACGGCGTTCTGGGTCTGTACGCAGGGTACTCTGCGACATTGCTGAGGAACTTGCCTGCGGGTGTGTTGAGCTATTCTTCGTTCGAGTACCTGAAATCGGCGGTTCTGAGCAAGACGAAGCAGGCCAATTTGGAGCCGATACAGAGCGTGGTGTGCGGGGCGTTGGCCGGTGCAATTTCGGCCTCCATTACGACGCCGCTGGATGTGGTGAAGACGAGGCTGATGACGGGTGCTGCGCAGGGTGGAGTTTCGGGGACGGTGAAGCAGATTATAATGGAGGAAGGGTGGGTGGGGTTCACTAGAGGAGTGGGGCCTAGAGTTCTTCACAGTGCTTGCTTTTCGGCTTTGGGTTACTTTGCTTTCGAGACTGCCAGGCTTGCCATTCTGAATCAGTATATTAGGAGGAAGGAGTTGCAGCAAATACAAGAGTCGGGTGTCGATGTTGGTGTTGCTTCCACCTGA

Protein Analysis

382

Amino Acids

40.48

Weight (kDa)

9.5

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 94 - 174 1.1e-18 Mitochondrial carrier protein
Mito_carr PF00153 187 - 264 8.7e-13 Mitochondrial carrier protein
Mito_carr PF00153 272 - 356 6.1e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AarI CACCTGC 2 cut(s) 503, 649
Acc16I TGCGCA 1 cut(s) 921
Acc36I ACCTGC 2 cut(s) 503, 649
AccB1I GGYRCC 3 cut(s) 359, 491, 601
AccB7I CCANNNNNTGG 1 cut(s) 325
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 593
AclWI GGATC 1 cut(s) 667
AcoI YGGCCR 2 cut(s) 561, 849
AcsI RAATTY 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 689
AcyI GRCGYC 2 cut(s) 360, 878
AfaI GTAC 3 cut(s) 704, 713, 773
AfiI CCNNNNNNNGG 8 cut(s) 186, 187, 325, 415, 559, 563, 648, 781
AjnI CCWGG 1 cut(s) 1055
AluBI AGCT 3 cut(s) 346, 613, 756
AluI AGCT 3 cut(s) 346, 613, 756
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 2 cut(s) 69, 1043
AlwI GGATC 1 cut(s) 667
AlwNI CAGNNNCTG 1 cut(s) 664
ApeKI GCWGC 4 cut(s) 622, 664, 917, 1099
ApoI RAATTY 1 cut(s) 109
AspLEI GCGC 4 cut(s) 275, 362, 470, 922
AspS9I GGNCC 5 cut(s) 28, 189, 297, 639, 995
AsuC2I CCSGG 3 cut(s) 295, 427, 637
AsuHPI GGTGA 6 cut(s) 82, 118, 124, 295, 904, 955
BaeGI GKGCMC 2 cut(s) 265, 606
BanI GGYRCC 3 cut(s) 359, 491, 601
BanII GRGCYC 1 cut(s) 615
BbsI GAAGAC 2 cut(s) 244, 902
Bbv12I GWGCWC 1 cut(s) 615
BbvCI CCTCAGC 1 cut(s) 728
BbvI GCAGC 4 cut(s) 634, 651, 904, 1111
BccI CCATC 1 cut(s) 341
BceAI ACGGC 3 cut(s) 434, 576, 703
BcgI CGANNNNNNTGC 2 cut(s) 583, 617
BciT130I CCWGG 1 cut(s) 1057
BcnI CCSGG 3 cut(s) 295, 427, 637
BcoDI GTCTC 2 cut(s) 69, 1043
BfaI CTAG 3 cut(s) 677, 984, 999
BfoI RGCGCY 2 cut(s) 363, 471
BfuAI ACCTGC 2 cut(s) 503, 649
BisI GCNGC 7 cut(s) 280, 439, 623, 665, 881, 918, 1100
BlsI GCNGC 7 cut(s) 281, 440, 624, 666, 882, 919, 1101
Bme1390I CCNGG 4 cut(s) 295, 427, 637, 1057
BmgT120I GGNCC 5 cut(s) 28, 189, 297, 639, 995
BmiI GGNNCC 9 cut(s) 298, 361, 463, 493, 568, 603, 640, 819, 996
BmrFI CCNGG 4 cut(s) 295, 427, 637, 1057
BmrI ACTGGG 2 cut(s) 201, 512
BmsI GCATC 3 cut(s) 379, 450, 618
BmuI ACTGGG 2 cut(s) 201, 512
BoxI GACNNNNGTC 1 cut(s) 227
BpiI GAAGAC 2 cut(s) 244, 902
BpmI CTGGAG 2 cut(s) 332, 448
Bpu10I CCTNAGC 1 cut(s) 728
BpuEI CTTGAG 3 cut(s) 80, 221, 383
BpuMI CCSGG 3 cut(s) 295, 427, 637
BsaHI GRCGYC 2 cut(s) 360, 878
BsaJI CCNNGG 7 cut(s) 294, 414, 558, 570, 606, 636, 642
BsaXI ACNNNNNCTCC 2 cut(s) 953, 983
Bsc4I CCNNNNNNNGG 8 cut(s) 186, 187, 325, 415, 559, 563, 648, 781
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 2 cut(s) 207, 507
Bse3DI GCAATG 1 cut(s) 722
BseBI CCWGG 1 cut(s) 1057
BseDI CCNNGG 7 cut(s) 294, 414, 558, 570, 606, 636, 642
BseGI GGATG 4 cut(s) 150, 549, 633, 892
BseLI CCNNNNNNNGG 8 cut(s) 186, 187, 325, 415, 559, 563, 648, 781
BseMI GCAATG 1 cut(s) 722
BseMII CTCAG 4 cut(s) 30, 378, 719, 782
BseNI ACTGG 2 cut(s) 207, 507
BseRI GAGGAG 3 cut(s) 163, 463, 1002
BseSI GKGCMC 2 cut(s) 265, 606
BseX3I CGGCCG 1 cut(s) 561
BseXI GCAGC 4 cut(s) 634, 651, 904, 1111
Bsh1236I CGCG 1 cut(s) 593
Bsh1285I CGRYCG 1 cut(s) 564
BshNI GGYRCC 3 cut(s) 359, 491, 601
BsiEI CGRYCG 1 cut(s) 564
BsiHKAI GWGCWC 1 cut(s) 615
BsiSI CCGG 5 cut(s) 294, 426, 564, 636, 852
BslFI GGGAC 1 cut(s) 952
BslI CCNNNNNNNGG 8 cut(s) 186, 187, 325, 415, 559, 563, 648, 781
BsmAI GTCTC 2 cut(s) 69, 1043
BsmFI GGGAC 1 cut(s) 952
Bsp1286I GDGCHC 3 cut(s) 265, 606, 615
Bsp143I GATC 1 cut(s) 672
Bsp19I CCATGG 1 cut(s) 570
BspCNI CTCAG 4 cut(s) 29, 377, 720, 783
BspFNI CGCG 1 cut(s) 593
BspLI GGNNCC 9 cut(s) 298, 361, 463, 493, 568, 603, 640, 819, 996
BspMI ACCTGC 2 cut(s) 503, 649
BspPI GGATC 1 cut(s) 667
BspT107I GGYRCC 3 cut(s) 359, 491, 601
BsrDI GCAATG 1 cut(s) 722
BsrFI RCCGGY 1 cut(s) 851
BsrI ACTGG 2 cut(s) 207, 507
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 7 cut(s) 294, 414, 558, 570, 606, 636, 642
BssMI GATC 1 cut(s) 672
BssNI GRCGYC 2 cut(s) 360, 878
BssT1I CCWWGG 4 cut(s) 414, 570, 606, 642
Bst2UI CCWGG 1 cut(s) 1057
Bst4CI ACNGT 3 cut(s) 250, 943, 1013
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 2 cut(s) 360, 878
BstAPI GCANNNNNTGC 2 cut(s) 628, 664
BstC8I GCNNGC 7 cut(s) 261, 277, 633, 741, 807, 1018, 1062
BstDEI CTNAG 4 cut(s) 16, 364, 728, 791
BstDSI CCRYGG 2 cut(s) 558, 570
BstF5I GGATG 4 cut(s) 150, 549, 633, 892
BstFNI CGCG 1 cut(s) 593
BstH2I RGCGCY 2 cut(s) 363, 471
BstHHI GCGC 4 cut(s) 275, 362, 470, 922
BstKTI GATC 1 cut(s) 675
BstMAI GTCTC 2 cut(s) 69, 1043
BstMBI GATC 1 cut(s) 672
BstMCI CGRYCG 1 cut(s) 564
BstMWI GCNNNNNNNGC 9 cut(s) 279, 476, 610, 619, 628, 664, 837, 863, 1061
BstNI CCWGG 1 cut(s) 1057
BstPAI GACNNNNGTC 1 cut(s) 227
BstSCI CCNGG 4 cut(s) 293, 425, 635, 1055
BstSLI GKGCMC 2 cut(s) 265, 606
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 4 cut(s) 634, 651, 904, 1111
BstV2I GAAGAC 2 cut(s) 244, 902
BstX2I RGATCY 1 cut(s) 672
BstYI RGATCY 1 cut(s) 672
BstZI CGGCCG 1 cut(s) 561
BtgI CCRYGG 2 cut(s) 558, 570
BtsCI GGATG 4 cut(s) 150, 549, 633, 892
BtsIMutI CAGTG 1 cut(s) 1018
BveI ACCTGC 2 cut(s) 503, 649
Cac8I GCNNGC 7 cut(s) 261, 277, 633, 741, 807, 1018, 1062
CaiI CAGNNNCTG 1 cut(s) 664
CfoI GCGC 4 cut(s) 275, 362, 470, 922
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 5 cut(s) 28, 189, 297, 639, 995
CseI GACGC 1 cut(s) 886
Csp6I GTAC 3 cut(s) 703, 712, 772
CviAII CATG 1 cut(s) 571
CviQI GTAC 3 cut(s) 703, 712, 772
DdeI CTNAG 4 cut(s) 16, 364, 728, 791
DinI GGCGCC 1 cut(s) 361
DpnI GATC 1 cut(s) 674
DpnII GATC 1 cut(s) 672
EaeI YGGCCR 2 cut(s) 561, 849
EagI CGGCCG 1 cut(s) 561
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 1 cut(s) 436
Ecl136II GAGCTC 1 cut(s) 613
EclXI CGGCCG 1 cut(s) 561
Eco130I CCWWGG 4 cut(s) 414, 570, 606, 642
Eco24I GRGCYC 1 cut(s) 615
Eco52I CGGCCG 1 cut(s) 561
Eco53kI GAGCTC 1 cut(s) 613
Eco57I CTGAAG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 613
EcoO109I RGGNCCY 2 cut(s) 297, 995
EcoRII CCWGG 1 cut(s) 1055
EcoT14I CCWWGG 4 cut(s) 414, 570, 606, 642
EcoT38I GRGCYC 1 cut(s) 615
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
ErhI CCWWGG 4 cut(s) 414, 570, 606, 642
FaeI CATG 1 cut(s) 574
FaiI YATR 4 cut(s) 572, 581, 956, 1080
FaqI GGGAC 1 cut(s) 952
FatI CATG 1 cut(s) 570
FauI CCCGC 3 cut(s) 43, 736, 833
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 7 cut(s) 280, 439, 623, 665, 881, 918, 1100
FokI GGATG 4 cut(s) 137, 536, 640, 899
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 7 cut(s) 280, 439, 623, 665, 881, 918, 1100
FspBI CTAG 3 cut(s) 677, 984, 999
FspI TGCGCA 1 cut(s) 921
GlaI GCGC 4 cut(s) 274, 361, 469, 921
GluI GCNGC 7 cut(s) 280, 439, 623, 665, 881, 918, 1100
GsuI CTGGAG 2 cut(s) 332, 448
HaeII RGCGCY 2 cut(s) 363, 471
HapII CCGG 5 cut(s) 294, 426, 564, 636, 852
HgaI GACGC 1 cut(s) 886
HhaI GCGC 4 cut(s) 275, 362, 470, 922
Hin1I GRCGYC 2 cut(s) 360, 878
Hin1II CATG 1 cut(s) 574
Hin6I GCGC 4 cut(s) 273, 360, 468, 920
HinP1I GCGC 4 cut(s) 273, 360, 468, 920
HinfI GANTC 4 cut(s) 12, 62, 1072, 1112
HpaII CCGG 5 cut(s) 294, 426, 564, 636, 852
HphI GGTGA 6 cut(s) 82, 118, 124, 295, 904, 955
Hpy166II GTNNAC 2 cut(s) 484, 981
Hpy188I TCNGA 3 cut(s) 367, 792, 1071
Hpy188III TCNNGA 6 cut(s) 238, 326, 349, 400, 409, 1048
Hpy8I GTNNAC 2 cut(s) 484, 981
Hpy99I CGWCG 3 cut(s) 461, 689, 880
HpyAV CCTTC 4 cut(s) 310, 394, 959, 1084
HpyCH4III ACNGT 3 cut(s) 250, 943, 1013
HpyCH4V TGCA 4 cut(s) 392, 631, 857, 1099
HpyF10VI GCNNNNNNNGC 9 cut(s) 279, 476, 610, 619, 628, 664, 837, 863, 1061
HpyF3I CTNAG 4 cut(s) 16, 364, 728, 791
Hsp92I GRCGYC 2 cut(s) 360, 878
Hsp92II CATG 1 cut(s) 574
HspAI GCGC 4 cut(s) 273, 360, 468, 920
KasI GGCGCC 1 cut(s) 359
Kzo9I GATC 1 cut(s) 672
LmnI GCTCC 5 cut(s) 351, 467, 566, 610, 817
Lsp1109I GCAGC 4 cut(s) 634, 651, 904, 1111
LweI GCATC 3 cut(s) 379, 450, 618
MaeI CTAG 3 cut(s) 677, 984, 999
MaeIII GTNAC 2 cut(s) 209, 1034
MalI GATC 1 cut(s) 674
MboI GATC 1 cut(s) 672
MboII GAAGA 6 cut(s) 79, 244, 682, 753, 907, 998
MfeI CAATTG 1 cut(s) 184
MflI RGATCY 1 cut(s) 672
MhlI GDGCHC 3 cut(s) 265, 606, 615
MluCI AATT 5 cut(s) 109, 184, 524, 811, 858
Mly113I GGCGCC 1 cut(s) 360
MlyI GAGTC 3 cut(s) 6, 71, 1121
MspA1I CMGCKG 4 cut(s) 438, 479, 625, 883
MspI CCGG 5 cut(s) 294, 426, 564, 636, 852
MspR9I CCNGG 4 cut(s) 295, 427, 637, 1057
MunI CAATTG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 1057
MvnI CGCG 1 cut(s) 593
MwoI GCNNNNNNNGC 9 cut(s) 279, 476, 610, 619, 628, 664, 837, 863, 1061
NarI GGCGCC 1 cut(s) 360
NciI CCSGG 3 cut(s) 295, 427, 637
NcoI CCATGG 1 cut(s) 570
NdeII GATC 1 cut(s) 672
NlaIII CATG 1 cut(s) 574
NlaIV GGNNCC 9 cut(s) 298, 361, 463, 493, 568, 603, 640, 819, 996
NsbI TGCGCA 1 cut(s) 921
PaqCI CACCTGC 2 cut(s) 503, 649
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PfeI GAWTC 1 cut(s) 1072
PflMI CCANNNNNTGG 1 cut(s) 325
PkrI GCNGC 7 cut(s) 281, 440, 624, 666, 882, 919, 1101
PleI GAGTC 3 cut(s) 6, 70, 1120
PluTI GGCGCC 1 cut(s) 363
PpsI GAGTC 3 cut(s) 6, 70, 1120
PshAI GACNNNNGTC 1 cut(s) 227
PsiI TTATAA 1 cut(s) 956
Psp124BI GAGCTC 1 cut(s) 615
Psp6I CCWGG 1 cut(s) 1055
PspGI CCWGG 1 cut(s) 1055
PspN4I GGNNCC 9 cut(s) 298, 361, 463, 493, 568, 603, 640, 819, 996
PspPI GGNCC 5 cut(s) 28, 189, 297, 639, 995
PstNI CAGNNNCTG 1 cut(s) 664
PsuI RGATCY 1 cut(s) 672
RsaI GTAC 3 cut(s) 704, 713, 773
RsaNI GTAC 3 cut(s) 703, 712, 772
SacI GAGCTC 1 cut(s) 615
SatI GCNGC 7 cut(s) 280, 439, 623, 665, 881, 918, 1100
Sau3AI GATC 1 cut(s) 672
Sau96I GGNCC 5 cut(s) 28, 189, 297, 639, 995
SchI GAGTC 3 cut(s) 6, 71, 1121
ScrFI CCNGG 4 cut(s) 295, 427, 637, 1057
SduI GDGCHC 3 cut(s) 265, 606, 615
SfaNI GCATC 3 cut(s) 379, 450, 618
SfoI GGCGCC 1 cut(s) 361
SmlI CTYRAG 3 cut(s) 59, 236, 398
SmoI CTYRAG 3 cut(s) 59, 236, 398
Sse9I AATT 5 cut(s) 109, 184, 524, 811, 858
SspDI GGCGCC 1 cut(s) 359
SspMI CTAG 3 cut(s) 677, 984, 999
SstI GAGCTC 1 cut(s) 615
StyD4I CCNGG 4 cut(s) 293, 425, 635, 1055
StyI CCWWGG 4 cut(s) 414, 570, 606, 642
TaaI ACNGT 3 cut(s) 250, 943, 1013
TaqI TCGA 5 cut(s) 255, 387, 768, 1047, 1122
TasI AATT 5 cut(s) 109, 184, 524, 811, 858
TauI GCSGC 3 cut(s) 282, 441, 883
TfiI GAWTC 1 cut(s) 1072
TscAI CASTG 1 cut(s) 1018
TseI GCWGC 4 cut(s) 622, 664, 917, 1099
TspDTI ATGAA 1 cut(s) 88
TspRI CASTG 1 cut(s) 1018
Van91I CCANNNNNTGG 1 cut(s) 325
XapI RAATTY 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 3 cut(s) 677, 984, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.