FvH4_2g14300

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
12575133 .. 12578513
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14300.t2

Sequence Viewer

Length: 1119 bp
ATGGAGAGCAGACTCTCAGCCTCTCTAGGCCTCCCCTCCCCAAACCCCGACCACCACCACCACCGCCACCGCTCCCAATCCTCCGATGACTTCCACAACCTCTTCACCCTCTTCACCCCACCCACCACCACATCCCACATCCCCTTCTTCGCCTCCACCACCACTAAATGGGCCTCCAAGACCCGCCCGCCCAAGGCCCAAACCATCATGAAAAACCTCTCCGTCCTCGAACGCGCCCTCATCGGCGCCGGCGCCGGCGGTATCGCCGGAGCCTTCACCTACTTCTGCCTCCACCCCCTCGACACCATAAAAACCAAGCTCCAGACCAAAGGCGCCTCCGACGTCTACGCCAACGCCTTCGACGCCGTCCTCAAGACCTTCCAGACCAACGGCCTCCTCGGCTTCTACAGCGGCATCTCCGCCGTCATCGTCGGCTCCACCGCCTCCTCCGCCGTCTACTTCGGCACCTGCGAGATGGGGAAATCATTCCTCTCCAAATTACCAAACTACCCTCCCGTCCTCATCCCGCCCACCGCGGGCGCCATGGGCAATTTCGTCTCTTCGGCCATAATGGTGCCGAAGGAGCTCATCACGCAGCGGATGCAGGCCGGCGCCAAAGGCCGGTCCTGGCAGGTGCTGCTCAAGATCGTCGAAAACGACGGCGTTTTGGGCCTCTACGCAGGCTACTCTGCCACATTGCTCAGAAACCTCCCTGCTGGGGTTTTGAGCTACTCTTCTTTCGAGTACTTGAAAGCTGCGGTTCTGAGCAAGACGAAGCAGGCCCAAATGGAGCCCATTCAGAGCGTGATTTGCGGGGCCCTCGCCGGGGCTATCTCGGCATCCATCACCACGCCGCTGGATGTGGTGAAGACCAGGCTGATGACTCAGAATGTGAACAAGGTGGCTGCTGTGGTGCAGAGTGGGGTTTCGGAGACGGTGAAGCAGATTCTGAAAGAGGAAGGGTTGGTGGGATTCACTAGAGGAATGGGGCCGAGGGTGCTGCATAGTGCTTGCTTTTCGGCATTGGGGTACTTTGCTTTCGAGACGGCTAGGCTTGCGATTTTGAATGAGTATATTAAGAGGAAGGAGTTGCAAGAAATTGGTGACGCTCCGGCTTGA

Protein Analysis

373

Amino Acids

39.84

Weight (kDa)

9.5

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 84 - 166 2.3e-19 Mitochondrial carrier protein
Mito_carr PF00153 178 - 255 1.3e-12 Mitochondrial carrier protein
Mito_carr PF00153 263 - 354 5.4e-21 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 476, 622
AatII GACGTC 1 cut(s) 345
Acc36I ACCTGC 2 cut(s) 476, 622
AccB1I GGYRCC 7 cut(s) 245, 251, 332, 464, 539, 574, 611
AccB7I CCANNNNNTGG 1 cut(s) 168
AccBSI CCGCTC 1 cut(s) 72
AccI GTMKAC 2 cut(s) 345, 456
AccII CGCG 2 cut(s) 234, 536
AcoI YGGCCR 1 cut(s) 564
AcyI GRCGYC 7 cut(s) 246, 252, 333, 342, 363, 540, 612
AfaI GTAC 2 cut(s) 746, 1031
AfiI CCNNNNNNNGG 7 cut(s) 168, 193, 536, 621, 718, 825, 826
AgsI TTSAA 2 cut(s) 751, 1066
AjnI CCWGG 2 cut(s) 626, 872
AluBI AGCT 4 cut(s) 319, 586, 729, 755
AluI AGCT 4 cut(s) 319, 586, 729, 755
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 3 cut(s) 562, 926, 1037
AlwNI CAGNNNCTG 2 cut(s) 637, 949
ApaI GGGCCC 1 cut(s) 820
ApeKI GCWGC 5 cut(s) 595, 637, 755, 905, 1000
Asp700I GAANNNNTTC 1 cut(s) 485
AspLEI GCGC 6 cut(s) 236, 248, 254, 335, 542, 614
AspS9I GGNCC 8 cut(s) 171, 196, 624, 670, 781, 816, 817, 989
AsuC2I CCSGG 1 cut(s) 826
AsuHPI GGTGA 7 cut(s) 97, 106, 268, 838, 877, 949, 1115
AvaII GGWCC 1 cut(s) 624
BaeGI GKGCMC 1 cut(s) 820
BanI GGYRCC 7 cut(s) 245, 251, 332, 464, 539, 574, 611
BanII GRGCYC 3 cut(s) 588, 795, 820
BbsI GAAGAC 1 cut(s) 875
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 5 cut(s) 607, 624, 742, 892, 987
BccI CCATC 3 cut(s) 212, 469, 851
BceAI ACGGC 6 cut(s) 350, 406, 407, 437, 676, 1062
BcgI CGANNNNNNTGC 2 cut(s) 982, 1016
BciT130I CCWGG 2 cut(s) 628, 874
BcnI CCSGG 1 cut(s) 826
BcoDI GTCTC 3 cut(s) 562, 926, 1037
BfaI CTAG 3 cut(s) 26, 978, 1050
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 5 cut(s) 249, 255, 336, 543, 615
BfuAI ACCTGC 2 cut(s) 476, 622
BglI GCCNNNNNGGC 1 cut(s) 399
BisI GCNGC 7 cut(s) 412, 596, 638, 756, 854, 906, 1001
BlsI GCNGC 7 cut(s) 413, 597, 639, 757, 855, 907, 1002
BmcAI AGTACT 1 cut(s) 746
Bme1390I CCNGG 3 cut(s) 628, 826, 874
Bme18I GGWCC 1 cut(s) 624
BmgT120I GGNCC 8 cut(s) 171, 196, 624, 670, 781, 816, 817, 989
BmrFI CCNGG 3 cut(s) 628, 826, 874
BmsI GCATC 3 cut(s) 423, 591, 848
BpiI GAAGAC 1 cut(s) 875
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 356, 626
BpuMI CCSGG 1 cut(s) 826
BsaHI GRCGYC 7 cut(s) 246, 252, 333, 342, 363, 540, 612
BsaJI CCNNGG 6 cut(s) 192, 397, 534, 543, 825, 992
Bsc4I CCNNNNNNNGG 7 cut(s) 168, 193, 536, 621, 718, 825, 826
Bse118I RCCGGY 4 cut(s) 248, 254, 608, 621
Bse3DI GCAATG 1 cut(s) 695
BseBI CCWGG 2 cut(s) 628, 874
BseDI CCNNGG 6 cut(s) 192, 397, 534, 543, 825, 992
BseGI GGATG 6 cut(s) 131, 138, 522, 606, 839, 865
BseLI CCNNNNNNNGG 7 cut(s) 168, 193, 536, 621, 718, 825, 826
BseMI GCAATG 1 cut(s) 695
BseMII CTCAG 4 cut(s) 30, 715, 755, 899
BseRI GAGGAG 2 cut(s) 386, 436
BseSI GKGCMC 1 cut(s) 820
BseXI GCAGC 5 cut(s) 607, 624, 742, 892, 987
BseYI CCCAGC 1 cut(s) 716
BsgI GTGCAG 1 cut(s) 935
Bsh1236I CGCG 2 cut(s) 234, 536
BshNI GGYRCC 7 cut(s) 245, 251, 332, 464, 539, 574, 611
BsiHKAI GWGCWC 1 cut(s) 588
BsiSI CCGG 7 cut(s) 249, 255, 267, 609, 622, 825, 1112
BslI CCNNNNNNNGG 7 cut(s) 168, 193, 536, 621, 718, 825, 826
BsmAI GTCTC 3 cut(s) 562, 926, 1037
BsmBI CGTCTC 3 cut(s) 562, 926, 1037
Bsp120I GGGCCC 1 cut(s) 816
Bsp1286I GDGCHC 3 cut(s) 588, 795, 820
Bsp143I GATC 1 cut(s) 645
Bsp19I CCATGG 1 cut(s) 543
BspCNI CTCAG 4 cut(s) 29, 714, 756, 898
BspFNI CGCG 2 cut(s) 234, 536
BspHI TCATGA 1 cut(s) 207
BspMI ACCTGC 2 cut(s) 476, 622
BspT107I GGYRCC 7 cut(s) 245, 251, 332, 464, 539, 574, 611
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 695
BsrFI RCCGGY 4 cut(s) 248, 254, 608, 621
BssAI RCCGGY 4 cut(s) 248, 254, 608, 621
BssECI CCNNGG 6 cut(s) 192, 397, 534, 543, 825, 992
BssMI GATC 1 cut(s) 645
BssNI GRCGYC 7 cut(s) 246, 252, 333, 342, 363, 540, 612
BssT1I CCWWGG 2 cut(s) 192, 543
Bst2UI CCWGG 2 cut(s) 628, 874
Bst4CI ACNGT 1 cut(s) 937
Bst6I CTCTTC 4 cut(s) 107, 116, 565, 739
BstACI GRCGYC 7 cut(s) 246, 252, 333, 342, 363, 540, 612
BstAPI GCANNNNNTGC 2 cut(s) 601, 637
BstDEI CTNAG 4 cut(s) 16, 701, 764, 885
BstDSI CCRYGG 2 cut(s) 534, 543
BstF5I GGATG 6 cut(s) 131, 138, 522, 606, 839, 865
BstFNI CGCG 2 cut(s) 234, 536
BstH2I RGCGCY 5 cut(s) 249, 255, 336, 543, 615
BstHHI GCGC 6 cut(s) 236, 248, 254, 335, 542, 614
BstKTI GATC 1 cut(s) 648
BstMAI GTCTC 3 cut(s) 562, 926, 1037
BstMBI GATC 1 cut(s) 645
BstNI CCWGG 2 cut(s) 628, 874
BstSCI CCNGG 3 cut(s) 626, 824, 872
BstSFI CTRYAG 1 cut(s) 406
BstSLI GKGCMC 1 cut(s) 820
BstUI CGCG 2 cut(s) 234, 536
BstV1I GCAGC 5 cut(s) 607, 624, 742, 892, 987
BstV2I GAAGAC 1 cut(s) 875
BstXI CCANNNNNNTGG 1 cut(s) 856
BtgI CCRYGG 2 cut(s) 534, 543
BtsCI GGATG 6 cut(s) 131, 138, 522, 606, 839, 865
BveI ACCTGC 2 cut(s) 476, 622
CaiI CAGNNNCTG 2 cut(s) 637, 949
CciI TCATGA 1 cut(s) 207
CfoI GCGC 6 cut(s) 236, 248, 254, 335, 542, 614
Cfr10I RCCGGY 4 cut(s) 248, 254, 608, 621
Cfr13I GGNCC 8 cut(s) 171, 196, 624, 670, 781, 816, 817, 989
Cfr42I CCGCGG 1 cut(s) 537
CseI GACGC 1 cut(s) 371
Csp6I GTAC 2 cut(s) 745, 1030
CviAII CATG 2 cut(s) 208, 544
CviQI GTAC 2 cut(s) 745, 1030
DdeI CTNAG 4 cut(s) 16, 701, 764, 885
DinI GGCGCC 5 cut(s) 247, 253, 334, 541, 613
DpnI GATC 1 cut(s) 647
DpnII GATC 1 cut(s) 645
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 4 cut(s) 107, 116, 565, 739
EarI CTCTTC 4 cut(s) 107, 116, 565, 739
EciI GGCGGA 2 cut(s) 409, 439
Ecl136II GAGCTC 1 cut(s) 586
Eco130I CCWWGG 2 cut(s) 192, 543
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 3 cut(s) 588, 795, 820
Eco47I GGWCC 1 cut(s) 624
Eco53kI GAGCTC 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 586
EcoO109I RGGNCCY 2 cut(s) 816, 817
EcoRII CCWGG 2 cut(s) 626, 872
EcoT14I CCWWGG 2 cut(s) 192, 543
EcoT38I GRGCYC 3 cut(s) 588, 795, 820
EgeI GGCGCC 5 cut(s) 247, 253, 334, 541, 613
EheI GGCGCC 5 cut(s) 247, 253, 334, 541, 613
ErhI CCWWGG 2 cut(s) 192, 543
Esp3I CGTCTC 3 cut(s) 562, 926, 1037
FaeI CATG 2 cut(s) 211, 547
FaiI YATR 6 cut(s) 209, 308, 545, 569, 1005, 1074
FatI CATG 2 cut(s) 207, 543
FauI CCCGC 5 cut(s) 191, 195, 529, 534, 806
FblI GTMKAC 2 cut(s) 345, 456
Fnu4HI GCNGC 7 cut(s) 412, 596, 638, 756, 854, 906, 1001
FokI GGATG 6 cut(s) 118, 125, 509, 613, 826, 872
FriOI GRGCYC 3 cut(s) 588, 795, 820
Fsp4HI GCNGC 7 cut(s) 412, 596, 638, 756, 854, 906, 1001
FspBI CTAG 3 cut(s) 26, 978, 1050
GlaI GCGC 6 cut(s) 235, 247, 253, 334, 541, 613
GluI GCNGC 7 cut(s) 412, 596, 638, 756, 854, 906, 1001
GsaI CCCAGC 1 cut(s) 720
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 5 cut(s) 249, 255, 336, 543, 615
HapII CCGG 7 cut(s) 249, 255, 267, 609, 622, 825, 1112
HgaI GACGC 1 cut(s) 371
HhaI GCGC 6 cut(s) 236, 248, 254, 335, 542, 614
Hin1I GRCGYC 7 cut(s) 246, 252, 333, 342, 363, 540, 612
Hin1II CATG 2 cut(s) 211, 547
Hin6I GCGC 6 cut(s) 234, 246, 252, 333, 540, 612
HinP1I GCGC 6 cut(s) 234, 246, 252, 333, 540, 612
HinfI GANTC 4 cut(s) 12, 883, 946, 972
HpaII CCGG 7 cut(s) 249, 255, 267, 609, 622, 825, 1112
HphI GGTGA 7 cut(s) 97, 106, 268, 838, 877, 949, 1115
Hpy166II GTNNAC 3 cut(s) 346, 457, 895
Hpy188I TCNGA 8 cut(s) 85, 340, 704, 765, 801, 888, 931, 951
Hpy188III TCNNGA 6 cut(s) 208, 322, 373, 382, 643, 1042
Hpy8I GTNNAC 3 cut(s) 346, 457, 895
Hpy99I CGWCG 5 cut(s) 344, 365, 434, 653, 662
HpyAV CCTTC 7 cut(s) 154, 283, 367, 388, 574, 953, 1078
HpyCH4III ACNGT 1 cut(s) 937
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 4 cut(s) 604, 916, 1003, 1093
HpyF3I CTNAG 4 cut(s) 16, 701, 764, 885
HpySE526I ACGT 1 cut(s) 342
Hsp92I GRCGYC 7 cut(s) 246, 252, 333, 342, 363, 540, 612
Hsp92II CATG 2 cut(s) 211, 547
HspAI GCGC 6 cut(s) 234, 246, 252, 333, 540, 612
KasI GGCGCC 5 cut(s) 245, 251, 332, 539, 611
KroI GCCGGC 3 cut(s) 248, 254, 608
KroNI GCCGGC 3 cut(s) 250, 256, 610
KspI CCGCGG 1 cut(s) 537
Kzo9I GATC 1 cut(s) 645
LmnI GCTCC 7 cut(s) 77, 269, 324, 440, 583, 790, 1114
Lsp1109I GCAGC 5 cut(s) 607, 624, 742, 892, 987
LweI GCATC 3 cut(s) 423, 591, 848
MaeI CTAG 3 cut(s) 26, 978, 1050
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 1103
MalI GATC 1 cut(s) 647
MbiI CCGCTC 1 cut(s) 72
MboI GATC 1 cut(s) 645
MboII GAAGA 6 cut(s) 94, 103, 139, 552, 726, 880
MhlI GDGCHC 3 cut(s) 588, 795, 820
MluCI AATT 3 cut(s) 497, 550, 1098
Mly113I GGCGCC 5 cut(s) 246, 252, 333, 540, 612
MlyI GAGTC 2 cut(s) 6, 877
MmeI TCCRAC 1 cut(s) 363
MreI CGCCGGCG 2 cut(s) 248, 254
MroNI GCCGGC 3 cut(s) 248, 254, 608
MroXI GAANNNNTTC 1 cut(s) 485
MseI TTAA 1 cut(s) 1077
MslI CAYNNNNRTG 1 cut(s) 572
MspA1I CMGCKG 4 cut(s) 411, 536, 598, 856
MspI CCGG 7 cut(s) 249, 255, 267, 609, 622, 825, 1112
MspR9I CCNGG 3 cut(s) 628, 826, 874
MvaI CCWGG 2 cut(s) 628, 874
MvnI CGCG 2 cut(s) 234, 536
NaeI GCCGGC 3 cut(s) 250, 256, 610
NarI GGCGCC 5 cut(s) 246, 252, 333, 540, 612
NciI CCSGG 1 cut(s) 826
NcoI CCATGG 1 cut(s) 543
NdeII GATC 1 cut(s) 645
NgoMIV GCCGGC 3 cut(s) 248, 254, 608
NlaIII CATG 2 cut(s) 211, 547
NmeAIII GCCGAG 3 cut(s) 378, 815, 1017
NmuCI GTSAC 1 cut(s) 1103
PagI TCATGA 1 cut(s) 207
PaqCI CACCTGC 2 cut(s) 476, 622
PceI AGGCCT 1 cut(s) 30
PcsI WCGNNNNNNNCGW 2 cut(s) 468, 654
PdiI GCCGGC 3 cut(s) 250, 256, 610
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 2 cut(s) 946, 972
PflFI GACNNNGTC 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 168
PkrI GCNGC 7 cut(s) 413, 597, 639, 757, 855, 907, 1002
PleI GAGTC 2 cut(s) 6, 877
PluTI GGCGCC 5 cut(s) 249, 255, 336, 543, 615
PpsI GAGTC 2 cut(s) 6, 877
Psp124BI GAGCTC 1 cut(s) 588
Psp6I CCWGG 2 cut(s) 626, 872
PspFI CCCAGC 1 cut(s) 716
PspGI CCWGG 2 cut(s) 626, 872
PspOMI GGGCCC 1 cut(s) 816
PspPI GGNCC 8 cut(s) 171, 196, 624, 670, 781, 816, 817, 989
PstNI CAGNNNCTG 2 cut(s) 637, 949
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 2 cut(s) 746, 1031
RsaNI GTAC 2 cut(s) 745, 1030
RseI CAYNNNNRTG 1 cut(s) 572
SacI GAGCTC 1 cut(s) 588
SacII CCGCGG 1 cut(s) 537
SaqAI TTAA 1 cut(s) 1077
SatI GCNGC 7 cut(s) 412, 596, 638, 756, 854, 906, 1001
Sau3AI GATC 1 cut(s) 645
Sau96I GGNCC 8 cut(s) 171, 196, 624, 670, 781, 816, 817, 989
ScaI AGTACT 1 cut(s) 746
SchI GAGTC 2 cut(s) 6, 877
ScrFI CCNGG 3 cut(s) 628, 826, 874
SduI GDGCHC 3 cut(s) 588, 795, 820
SfaNI GCATC 3 cut(s) 423, 591, 848
SfcI CTRYAG 1 cut(s) 406
SfoI GGCGCC 5 cut(s) 247, 253, 334, 541, 613
Sfr303I CCGCGG 1 cut(s) 537
SgrAI CRCCGGYG 2 cut(s) 248, 254
SgrBI CCGCGG 1 cut(s) 537
SinI GGWCC 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 572
SmlI CTYRAG 2 cut(s) 371, 641
SmoI CTYRAG 2 cut(s) 371, 641
Sse9I AATT 3 cut(s) 497, 550, 1098
SseBI AGGCCT 1 cut(s) 30
SspDI GGCGCC 5 cut(s) 245, 251, 332, 539, 611
SspMI CTAG 3 cut(s) 26, 978, 1050
SstI GAGCTC 1 cut(s) 588
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 3 cut(s) 626, 824, 872
StyI CCWWGG 2 cut(s) 192, 543
TaaI ACNGT 1 cut(s) 937
TaiI ACGT 1 cut(s) 345
TaqI TCGA 6 cut(s) 228, 300, 360, 651, 741, 1041
TasI AATT 3 cut(s) 497, 550, 1098
TatI WGTACW 1 cut(s) 744
TauI GCSGC 2 cut(s) 414, 856
TfiI GAWTC 2 cut(s) 946, 972
Tru1I TTAA 1 cut(s) 1077
Tru9I TTAA 1 cut(s) 1077
TseFI GTSAC 1 cut(s) 1103
TseI GCWGC 5 cut(s) 595, 637, 755, 905, 1000
Tsp45I GTSAC 1 cut(s) 1103
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 211
Tth111I GACNNNGTC 1 cut(s) 365
Van91I CCANNNNNTGG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 624
XmiI GTMKAC 2 cut(s) 345, 456
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 3 cut(s) 26, 978, 1050
ZraI GACGTC 1 cut(s) 343
ZrmI AGTACT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.