Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009209

Physical Location & Seq

Genomic Coordinates Forward (+)

13590242 .. 13593098

Gene Structure 2857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0102000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTGGGCCGAACAACCCGAGGCCCCAAACCCGCCGCCGACGGCGACGAAGAAACCGGAAGCGGAGACAACGCAGCCGCAGAGGTTTCGGACTACGAGCAAATCAGAGACCAACGGATCAAAGAGAACAAGGAGCGAATGCAGAAGCTGGGCATTTTCGACCTTTCACTCCAGCTCAAGTCCAAACCCTCCGCCGCTTCAAAACGCGGCCGTCCTTTGAAAGACCCTTCCGATCAGACCAAAACCTCTCTCTCCCCGGCAAGGCGCTCCTCTAGGTTGAAGACTCTGGCTCCGGTGAGTTATGTGGAGATGAGGCCCAAAGGGAAGAGGGAGTCTTCATGGAATGGTGAGATTAACATAAAGGAGGGTAAAAGGCCGGAGATTTATAGTGATGAGCATGAAAAGCTGTTGGGGGATTGTAAGGAGACTTGGGAACTCTCGGTTGATGGGTATGGAGAAGACGGGAAGCGCATATATGATCCGGTTAAGGGTGAAACTTGCCACCAATGCAGGCAGAAAACTCTAGGTCAGCATACACATTGCTGCAAATGTGACTTGGTCCAAGGGCAGTTTTGCGGAGATTGCTTATACATGAGATATGGAGAGAATGTGATCGAAGCCAACAAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGCATTTGCAACTGCAGTCTTTGCCGTAAAGAAAAAGGGTGGGAGCCCACTGGTAATCTGTATAGGAAGGTCATAAATCTGGGTTACAAGTCTGTGGCACATTATCTTATTCAAACCCGTCGTTCCCAACCAAAATCAGAAACCTCAGGTGCAGAGGAATCAATGCATGATGATATGAAACAAGAAACAGAAGAGGCACACTTAACAGGGGGAGAAGAAATGGAAGAGGTTCAGTGTGTTGATGCCAAAGATTTGGGTAACATAGATGATACTGGTGCTGCCGTTGCTGGGGATTCAGTTGAAGGTGAGACAAAGGGAAAGCCGAGAAGGAGGAGCACAAGGTTGAGGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

337

Amino Acids

37.78

Weight (kDa)

7.47

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-4CXXC_R1	PF10497	159 - 255	4.1e-40	Zinc-finger domain of monoamine-oxidase A repressor R1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42130
fragaria_vesca	FvH4_2g14300 FvH4_2g14300
malus_domestica	MD05G1019200.v1.1 MD10G1020700.v1.1
prunus_persica	Prupe.8G024200_v2.0.a1 Prupe.8G024200_v2.0.a1
pyrus_communis	pycom05g01120 pycom10g01330
rosa_chinensis	RchiOBHm_Chr6g0276601
rosa_laevigata	RLG00000013387
rosa_multiflora	Rmu_sc0000969.1_g000001 Rmu_sc0028629.1_g000001 Rmu_sc0042856.1_g000001 Rmu_ssc0000059.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192160
rosa_rugosa	Rorug06G0102000
rosa_samantha	Rh6AG212700 Rh6BG217700 Rh6CG220000 Rh6DG209800
rosa_wichuraiana	Rw6G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	8 cut(s)	33, 36, 63, 78, 192, 195, 207, 576
AclWI	GGATC	2 cut(s)	125, 473
AcoI	YGGCCR	1 cut(s)	208
AfiI	CCNNNNNNNGG	3 cut(s)	261, 488, 945
AgsI	TTSAA	5 cut(s)	201, 220, 280, 770, 959
AluBI	AGCT	3 cut(s)	148, 175, 406
AluI	AGCT	3 cut(s)	148, 175, 406
Alw21I	GWGCWC	1 cut(s)	995
Alw26I	GTCTC	4 cut(s)	60, 102, 419, 959
AlwI	GGATC	2 cut(s)	125, 473
AlwNI	CAGNNNCTG	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	5 cut(s)	7, 22, 208, 314, 374
ApeKI	GCWGC	3 cut(s)	74, 543, 935
Asp700I	GAANNNNTTC	1 cut(s)	885
AspLEI	GCGC	2 cut(s)	267, 471
AspS9I	GGNCC	4 cut(s)	7, 23, 315, 559
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	4 cut(s)	307, 359, 503, 974
AvaI	CYCGRG	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	559
AxyI	CCTNAGG	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	3 cut(s)	287, 327, 465
Bbv12I	GWGCWC	1 cut(s)	995
BbvI	GCAGC	3 cut(s)	86, 530, 922
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	4 cut(s)	58, 195, 666, 923
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	4 cut(s)	60, 102, 419, 959
BfaI	CTAG	2 cut(s)	273, 524
BfmI	CTRYAG	1 cut(s)	670
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	7 cut(s)	36, 75, 78, 195, 208, 544, 936
BlsI	GCNGC	7 cut(s)	37, 76, 79, 196, 209, 545, 937
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	559
BmeT110I	CYCGRG	1 cut(s)	18
BmgT120I	GGNCC	4 cut(s)	7, 23, 315, 559
BmiI	GGNNCC	3 cut(s)	25, 291, 702
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	889
BpiI	GAAGAC	3 cut(s)	287, 327, 465
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	19, 255, 562
BsaWI	WCCGGW	3 cut(s)	56, 292, 481
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 594, 624
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 488, 945
Bse1I	ACTGG	2 cut(s)	712, 934
Bse21I	CCTNAGG	1 cut(s)	802
Bse3DI	GCAATG	1 cut(s)	538
BseDI	CCNNGG	3 cut(s)	19, 255, 562
BseLI	CCNNNNNNNGG	3 cut(s)	261, 488, 945
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	816
BseNI	ACTGG	2 cut(s)	712, 934
BseRI	GAGGAG	2 cut(s)	259, 1003
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	86, 530, 922
BseYI	CCCAGC	2 cut(s)	148, 944
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	5 cut(s)	9, 24, 210, 316, 376
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	995
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	5 cut(s)	57, 257, 293, 377, 482
BslI	CCNNNNNNNGG	3 cut(s)	261, 488, 945
BsmAI	GTCTC	4 cut(s)	60, 102, 419, 959
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	5 cut(s)	9, 24, 210, 316, 376
Bso31I	GGTCTC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	705, 995
Bsp143I	GATC	4 cut(s)	117, 232, 478, 612
BspACI	CCGC	8 cut(s)	33, 36, 63, 78, 192, 195, 207, 576
BspANI	GGCC	5 cut(s)	9, 24, 210, 316, 376
BspCNI	CTCAG	1 cut(s)	815
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	25, 291, 702
BspMAI	CTGCAG	1 cut(s)	674
BspPI	GGATC	2 cut(s)	125, 473
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	712, 934
BssECI	CCNNGG	3 cut(s)	19, 255, 562
BssMI	GATC	4 cut(s)	117, 232, 478, 612
BssT1I	CCWWGG	1 cut(s)	562
Bst6I	CTCTTC	3 cut(s)	320, 843, 876
BstAPI	GCANNNNNTGC	1 cut(s)	678
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	1 cut(s)	802
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	2 cut(s)	267, 471
BstKTI	GATC	4 cut(s)	120, 235, 481, 615
BstMAI	GTCTC	4 cut(s)	60, 102, 419, 959
BstMBI	GATC	4 cut(s)	117, 232, 478, 612
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	5 cut(s)	403, 507, 582, 678, 941
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	670
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	86, 530, 922
BstV2I	GAAGAC	3 cut(s)	287, 327, 465
BstXI	CCANNNNNNTGG	1 cut(s)	910
BstZI	CGGCCG	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	802
BsuRI	GGCC	5 cut(s)	9, 24, 210, 316, 376
BtsIMutI	CAGTG	2 cut(s)	705, 896
Cac8I	GCNNGC	1 cut(s)	512
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	2 cut(s)	267, 471
Cfr13I	GGNCC	4 cut(s)	7, 23, 315, 559
CviAII	CATG	4 cut(s)	339, 398, 592, 824
DdeI	CTNAG	1 cut(s)	802
DpnI	GATC	4 cut(s)	119, 234, 480, 614
DpnII	GATC	4 cut(s)	117, 232, 478, 612
EaeI	YGGCCR	1 cut(s)	208
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	3 cut(s)	320, 843, 876
EarI	CTCTTC	3 cut(s)	320, 843, 876
EciI	GGCGGA	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	559
Eco52I	CGGCCG	1 cut(s)	208
Eco81I	CCTNAGG	1 cut(s)	802
Eco88I	CYCGRG	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	562
EcoT22I	ATGCAT	1 cut(s)	825
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	4 cut(s)	342, 401, 595, 827
FatI	CATG	4 cut(s)	338, 397, 591, 823
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	7 cut(s)	36, 75, 78, 195, 208, 544, 936
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	7 cut(s)	36, 75, 78, 195, 208, 544, 936
FspBI	CTAG	2 cut(s)	273, 524
GlaI	GCGC	2 cut(s)	266, 470
GluI	GCNGC	7 cut(s)	36, 75, 78, 195, 208, 544, 936
GsaI	CCCAGC	2 cut(s)	152, 948
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	5 cut(s)	9, 24, 210, 316, 376
HapII	CCGG	5 cut(s)	57, 257, 293, 377, 482
HhaI	GCGC	2 cut(s)	267, 471
Hin1II	CATG	4 cut(s)	342, 401, 595, 827
Hin6I	GCGC	2 cut(s)	265, 469
HinP1I	GCGC	2 cut(s)	265, 469
HinfI	GANTC	4 cut(s)	283, 332, 815, 950
HpaII	CCGG	5 cut(s)	57, 257, 293, 377, 482
HphI	GGTGA	4 cut(s)	307, 359, 503, 974
Hpy188I	TCNGA	5 cut(s)	91, 107, 232, 237, 796
Hpy188III	TCNNGA	1 cut(s)	632
Hpy99I	CGWCG	3 cut(s)	44, 50, 780
HpyAV	CCTTC	4 cut(s)	237, 718, 953, 978
HpyCH4V	TGCA	7 cut(s)	142, 510, 546, 666, 672, 809, 823
HpyF10VI	GCNNNNNNNGC	5 cut(s)	403, 507, 582, 678, 941
HpyF3I	CTNAG	1 cut(s)	802
Hsp92II	CATG	4 cut(s)	342, 401, 595, 827
HspAI	GCGC	2 cut(s)	265, 469
Kzo9I	GATC	4 cut(s)	117, 232, 478, 612
LmnI	GCTCC	5 cut(s)	133, 272, 295, 700, 990
Lsp1109I	GCAGC	3 cut(s)	86, 530, 922
LweI	GCATC	1 cut(s)	889
MaeI	CTAG	2 cut(s)	273, 524
MaeIII	GTNAC	3 cut(s)	551, 740, 914
MalI	GATC	4 cut(s)	119, 234, 480, 614
MboI	GATC	4 cut(s)	117, 232, 478, 612
MboII	GAAGA	8 cut(s)	62, 292, 327, 337, 470, 860, 884, 893
MhlI	GDGCHC	2 cut(s)	705, 995
MlyI	GAGTC	2 cut(s)	277, 341
Mph1103I	ATGCAT	1 cut(s)	825
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	3 cut(s)	354, 486, 860
MspI	CCGG	5 cut(s)	57, 257, 293, 377, 482
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	144
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	5 cut(s)	403, 507, 582, 678, 941
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	4 cut(s)	117, 232, 478, 612
NlaIII	CATG	4 cut(s)	342, 401, 595, 827
NlaIV	GGNNCC	3 cut(s)	25, 291, 702
NmeAIII	GCCGAG	1 cut(s)	1005
NmuCI	GTSAC	1 cut(s)	551
NsiI	ATGCAT	1 cut(s)	825
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	815, 950
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	7 cut(s)	37, 76, 79, 196, 209, 545, 937
PleI	GAGTC	2 cut(s)	277, 340
PpsI	GAGTC	2 cut(s)	277, 340
PspFI	CCCAGC	2 cut(s)	148, 944
PspN4I	GGNNCC	3 cut(s)	25, 291, 702
PspPI	GGNCC	4 cut(s)	7, 23, 315, 559
PstI	CTGCAG	1 cut(s)	674
PstNI	CAGNNNCTG	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	557
SaqAI	TTAA	3 cut(s)	354, 486, 860
SatI	GCNGC	7 cut(s)	36, 75, 78, 195, 208, 544, 936
Sau3AI	GATC	4 cut(s)	117, 232, 478, 612
Sau96I	GGNCC	4 cut(s)	7, 23, 315, 559
SchI	GAGTC	2 cut(s)	277, 341
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	705, 995
SfaNI	GCATC	1 cut(s)	889
SfcI	CTRYAG	1 cut(s)	670
SinI	GGWCC	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	8 cut(s)	33, 36, 63, 78, 192, 195, 207, 576
SspMI	CTAG	2 cut(s)	273, 524
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	562
TaqI	TCGA	2 cut(s)	159, 615
TauI	GCSGC	4 cut(s)	38, 80, 197, 210
TfiI	GAWTC	2 cut(s)	815, 950
Tru1I	TTAA	3 cut(s)	354, 486, 860
Tru9I	TTAA	3 cut(s)	354, 486, 860
TscAI	CASTG	2 cut(s)	712, 896
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	3 cut(s)	74, 543, 935
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	327, 414, 848
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	2 cut(s)	712, 896
Tth111I	GACNNNGTC	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	2 cut(s)	273, 524
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.