Rh6CG220000

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
36589049 .. 36593436
4388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG220000.1

Sequence Viewer

Length: 1116 bp
ATGGAGAGCAGACTCTCCGCCTCTCTTGGCCTCCCCTCTCCAAACCCAGACCACCACCACCACTCTCAAACCTCCGATGACTTCCACAACCTCTTCACCCACTTCGCCTCCCCAACCACATCTCACATCCCATTCTTCGCCTCCACCACCACGACCACCACCAAATGGGCCTCCAACACCCGCCCGCCCAAGGCCAAGTCCATAATGAAGAACCTCTCCGTCTTCGAGAGGGCCCTCATCGGCGCCGGCGGCGGCGGCATCGCCGGAGCCTTCACCTACTTCTGCCTCCACCCCCTCGACACCATCAAGACCAAGCTCCAGACCAAAGGCGCGTCCGAAGTCTACGCCAACGCCTTCGACGCCGTCCTCAAGACCTTCCAGACCAAGGGCGTTCTGGGGTTTTACAGCGGCATCTCCGCCGTCATCGTCGGCTCCACCGCTTCCTCCGCCGTCTACTTCGGCACCTGCGAGATGGGGAAGTCGTTTCTCTCCAAATTACCCAACTACCCCCCGATCCTCATCCCTCCCACTGCCGGCGCCATGGGCAACATCGTCTCTTCGGCCATAATGGTGCCCAAGGAGCTCATCACGCAGCGGATGCAGGCCGGGGCCAGAGGCAGGTCCTGGCAGGTGTTGCTGAAGATCCTCGAAAACGACGGCGTTTTGGGCCTCTACGCAGGCTACTCCGCAACCTTGCTCAGAAACTTGCCCGCCGGGGTCTTGAGCTACTCTTCCTTCGAGTACTTGAAAGCCGCGGTTCTGAGCAAGACCAAGCAGGCCCAAATGGAGCCCGTTCAGAGCGTGATTTGCGGCGCCTTGGCCGGAGCTATCTCGGCCTCCATTACGACGCCGCTGGACGTTGTGAAGACGAGGCTGATGACTCAGAATGTGAATAAGGTGGCTGCTTTTGTGCAGAGTGGGGTTTCGGAGACGGTGAAGCAGATTCTGAAAGAAGAAGGGCTGGTGGGATTCACAAGAGGAATGGGGCCGAGGGTTCTTCACAGTGCCTGCTTTTCGGCATTGGGGTACTTTGCTTTCGAGACGGCTAGGCTTGCGATTTTGAATGAGTATATCAAGAGGAAGGAGTTGCAAGAAATTGGTGATGCTCCGGCTTGA

Protein Analysis

371

Amino Acids

39.65

Weight (kDa)

9.43

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 84 - 165 6.8e-19 Mitochondrial carrier protein
Mito_carr PF00153 177 - 254 1.7e-12 Mitochondrial carrier protein
Mito_carr PF00153 262 - 353 3.7e-21 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 473, 619
Acc36I ACCTGC 3 cut(s) 473, 609, 619
AccB1I GGYRCC 5 cut(s) 242, 461, 536, 571, 812
AccB7I CCANNNNNTGG 1 cut(s) 165
AccI GTMKAC 2 cut(s) 342, 453
AccII CGCG 2 cut(s) 332, 755
AclWI GGATC 2 cut(s) 508, 637
AcoI YGGCCR 2 cut(s) 561, 819
AcuI CTGAAG 1 cut(s) 659
AcyI GRCGYC 5 cut(s) 243, 360, 537, 813, 848
AfaI GTAC 2 cut(s) 743, 1028
AfiI CCNNNNNNNGG 5 cut(s) 165, 190, 385, 533, 618
AgsI TTSAA 2 cut(s) 748, 1063
AjnI CCWGG 1 cut(s) 623
AluBI AGCT 4 cut(s) 316, 583, 726, 827
AluI AGCT 4 cut(s) 316, 583, 726, 827
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 3 cut(s) 559, 923, 1034
AlwI GGATC 2 cut(s) 508, 637
AlwNI CAGNNNCTG 3 cut(s) 624, 946, 1008
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 592, 902
AspLEI GCGC 4 cut(s) 245, 332, 539, 815
AspS9I GGNCC 8 cut(s) 168, 231, 232, 609, 621, 667, 778, 986
AsuC2I CCSGG 2 cut(s) 607, 715
AsuHPI GGTGA 4 cut(s) 88, 265, 946, 1112
AvaII GGWCC 1 cut(s) 621
BaeGI GKGCMC 2 cut(s) 235, 576
BanI GGYRCC 5 cut(s) 242, 461, 536, 571, 812
BanII GRGCYC 3 cut(s) 235, 585, 792
BbsI GAAGAC 2 cut(s) 214, 872
Bbv12I GWGCWC 1 cut(s) 585
BbvI GCAGC 2 cut(s) 604, 889
BccI CCATC 2 cut(s) 311, 466
BceAI ACGGC 5 cut(s) 347, 404, 434, 673, 1059
BciT130I CCWGG 1 cut(s) 625
BcnI CCSGG 2 cut(s) 607, 715
BcoDI GTCTC 3 cut(s) 559, 923, 1034
BfaI CTAG 1 cut(s) 1047
BfoI RGCGCY 3 cut(s) 246, 540, 816
BfuAI ACCTGC 3 cut(s) 473, 609, 619
BisI GCNGC 9 cut(s) 250, 253, 256, 409, 593, 753, 811, 851, 903
BlsI GCNGC 9 cut(s) 251, 254, 257, 410, 594, 754, 812, 852, 904
BmcAI AGTACT 1 cut(s) 743
Bme1390I CCNGG 3 cut(s) 607, 625, 715
Bme18I GGWCC 1 cut(s) 621
BmgT120I GGNCC 8 cut(s) 168, 231, 232, 609, 621, 667, 778, 986
BmrFI CCNGG 3 cut(s) 607, 625, 715
BmsI GCATC 4 cut(s) 267, 420, 588, 1093
BpiI GAAGAC 2 cut(s) 214, 872
BpmI CTGGAG 1 cut(s) 302
BpuEI CTTGAG 2 cut(s) 353, 742
BpuMI CCSGG 2 cut(s) 607, 715
BsaBI GATNNNNATC 1 cut(s) 518
BsaHI GRCGYC 5 cut(s) 243, 360, 537, 813, 848
BsaJI CCNNGG 9 cut(s) 189, 384, 540, 576, 606, 714, 753, 816, 989
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 190, 385, 533, 618
Bse118I RCCGGY 2 cut(s) 245, 533
Bse8I GATNNNNATC 1 cut(s) 518
BseBI CCWGG 1 cut(s) 625
BseDI CCNNGG 9 cut(s) 189, 384, 540, 576, 606, 714, 753, 816, 989
BseGI GGATG 3 cut(s) 126, 519, 603
BseJI GATNNNNATC 1 cut(s) 518
BseLI CCNNNNNNNGG 5 cut(s) 165, 190, 385, 533, 618
BseMII CTCAG 3 cut(s) 712, 752, 896
BseSI GKGCMC 2 cut(s) 235, 576
BseXI GCAGC 2 cut(s) 604, 889
BsgI GTGCAG 1 cut(s) 932
Bsh1236I CGCG 2 cut(s) 332, 755
BshNI GGYRCC 5 cut(s) 242, 461, 536, 571, 812
BsiHKAI GWGCWC 1 cut(s) 585
BsiSI CCGG 7 cut(s) 246, 264, 534, 606, 714, 822, 1109
BslI CCNNNNNNNGG 5 cut(s) 165, 190, 385, 533, 618
BsmAI GTCTC 3 cut(s) 559, 923, 1034
BsmBI CGTCTC 3 cut(s) 559, 923, 1034
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 4 cut(s) 235, 576, 585, 792
Bsp143I GATC 2 cut(s) 513, 642
Bsp19I CCATGG 1 cut(s) 540
BspCNI CTCAG 3 cut(s) 711, 753, 895
BspFNI CGCG 2 cut(s) 332, 755
BspMI ACCTGC 3 cut(s) 473, 609, 619
BspPI GGATC 2 cut(s) 508, 637
BspT107I GGYRCC 5 cut(s) 242, 461, 536, 571, 812
BsrFI RCCGGY 2 cut(s) 245, 533
BssAI RCCGGY 2 cut(s) 245, 533
BssECI CCNNGG 9 cut(s) 189, 384, 540, 576, 606, 714, 753, 816, 989
BssMI GATC 2 cut(s) 513, 642
BssNI GRCGYC 5 cut(s) 243, 360, 537, 813, 848
BssT1I CCWWGG 5 cut(s) 189, 384, 540, 576, 816
Bst2UI CCWGG 1 cut(s) 625
Bst4CI ACNGT 2 cut(s) 934, 1004
Bst6I CTCTTC 3 cut(s) 98, 562, 736
BstACI GRCGYC 5 cut(s) 243, 360, 537, 813, 848
BstAPI GCANNNNNTGC 2 cut(s) 598, 634
BstC8I GCNNGC 9 cut(s) 185, 247, 535, 603, 679, 711, 777, 1009, 1053
BstDEI CTNAG 3 cut(s) 698, 761, 882
BstDSI CCRYGG 2 cut(s) 540, 753
BstF5I GGATG 3 cut(s) 126, 519, 603
BstFNI CGCG 2 cut(s) 332, 755
BstH2I RGCGCY 3 cut(s) 246, 540, 816
BstHHI GCGC 4 cut(s) 245, 332, 539, 815
BstKTI GATC 2 cut(s) 516, 645
BstMAI GTCTC 3 cut(s) 559, 923, 1034
BstMBI GATC 2 cut(s) 513, 642
BstNI CCWGG 1 cut(s) 625
BstSCI CCNGG 3 cut(s) 605, 623, 713
BstSLI GKGCMC 2 cut(s) 235, 576
BstUI CGCG 2 cut(s) 332, 755
BstV1I GCAGC 2 cut(s) 604, 889
BstV2I GAAGAC 2 cut(s) 214, 872
BstX2I RGATCY 1 cut(s) 642
BstYI RGATCY 1 cut(s) 642
BtgI CCRYGG 2 cut(s) 540, 753
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 3 cut(s) 126, 519, 603
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 528, 1009
BveI ACCTGC 3 cut(s) 473, 609, 619
Cac8I GCNNGC 9 cut(s) 185, 247, 535, 603, 679, 711, 777, 1009, 1053
CaiI CAGNNNCTG 3 cut(s) 624, 946, 1008
CfoI GCGC 4 cut(s) 245, 332, 539, 815
Cfr10I RCCGGY 2 cut(s) 245, 533
Cfr13I GGNCC 8 cut(s) 168, 231, 232, 609, 621, 667, 778, 986
Cfr42I CCGCGG 1 cut(s) 756
CseI GACGC 3 cut(s) 321, 368, 856
Csp6I GTAC 2 cut(s) 742, 1027
CviAII CATG 1 cut(s) 541
CviQI GTAC 2 cut(s) 742, 1027
DdeI CTNAG 3 cut(s) 698, 761, 882
DinI GGCGCC 3 cut(s) 244, 538, 814
DpnI GATC 2 cut(s) 515, 644
DpnII GATC 2 cut(s) 513, 642
EaeI YGGCCR 2 cut(s) 561, 819
Eam1104I CTCTTC 3 cut(s) 98, 562, 736
EarI CTCTTC 3 cut(s) 98, 562, 736
EciI GGCGGA 3 cut(s) 7, 406, 436
Ecl136II GAGCTC 1 cut(s) 583
Eco130I CCWWGG 5 cut(s) 189, 384, 540, 576, 816
Eco24I GRGCYC 3 cut(s) 235, 585, 792
Eco47I GGWCC 1 cut(s) 621
Eco53kI GAGCTC 1 cut(s) 583
Eco57I CTGAAG 1 cut(s) 659
EcoICRI GAGCTC 1 cut(s) 583
EcoO109I RGGNCCY 3 cut(s) 231, 232, 621
EcoRII CCWGG 1 cut(s) 623
EcoT14I CCWWGG 5 cut(s) 189, 384, 540, 576, 816
EcoT38I GRGCYC 3 cut(s) 235, 585, 792
EgeI GGCGCC 3 cut(s) 244, 538, 814
EheI GGCGCC 3 cut(s) 244, 538, 814
ErhI CCWWGG 5 cut(s) 189, 384, 540, 576, 816
Esp3I CGTCTC 3 cut(s) 559, 923, 1034
FaeI CATG 1 cut(s) 544
FaiI YATR 4 cut(s) 203, 542, 566, 1071
FatI CATG 1 cut(s) 540
FauI CCCGC 3 cut(s) 188, 192, 718
FblI GTMKAC 2 cut(s) 342, 453
Fnu4HI GCNGC 9 cut(s) 250, 253, 256, 409, 593, 753, 811, 851, 903
FokI GGATG 3 cut(s) 113, 506, 610
FriOI GRGCYC 3 cut(s) 235, 585, 792
Fsp4HI GCNGC 9 cut(s) 250, 253, 256, 409, 593, 753, 811, 851, 903
FspBI CTAG 1 cut(s) 1047
GlaI GCGC 4 cut(s) 244, 331, 538, 814
GluI GCNGC 9 cut(s) 250, 253, 256, 409, 593, 753, 811, 851, 903
GsuI CTGGAG 1 cut(s) 302
HaeII RGCGCY 3 cut(s) 246, 540, 816
HapII CCGG 7 cut(s) 246, 264, 534, 606, 714, 822, 1109
HgaI GACGC 3 cut(s) 321, 368, 856
HhaI GCGC 4 cut(s) 245, 332, 539, 815
Hin1I GRCGYC 5 cut(s) 243, 360, 537, 813, 848
Hin1II CATG 1 cut(s) 544
Hin6I GCGC 4 cut(s) 243, 330, 537, 813
HinP1I GCGC 4 cut(s) 243, 330, 537, 813
HinfI GANTC 4 cut(s) 12, 880, 943, 969
HpaII CCGG 7 cut(s) 246, 264, 534, 606, 714, 822, 1109
HphI GGTGA 4 cut(s) 88, 265, 946, 1112
Hpy166II GTNNAC 2 cut(s) 343, 454
Hpy188I TCNGA 8 cut(s) 76, 337, 701, 762, 798, 885, 928, 948
Hpy188III TCNNGA 8 cut(s) 226, 307, 319, 370, 379, 721, 1039, 1075
Hpy8I GTNNAC 2 cut(s) 343, 454
Hpy99I CGWCG 4 cut(s) 362, 431, 659, 850
HpyAV CCTTC 6 cut(s) 280, 364, 385, 745, 950, 1075
HpyCH4III ACNGT 2 cut(s) 934, 1004
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 3 cut(s) 601, 913, 1090
HpyF3I CTNAG 3 cut(s) 698, 761, 882
HpySE526I ACGT 1 cut(s) 858
Hsp92I GRCGYC 5 cut(s) 243, 360, 537, 813, 848
Hsp92II CATG 1 cut(s) 544
HspAI GCGC 4 cut(s) 243, 330, 537, 813
KasI GGCGCC 3 cut(s) 242, 536, 812
KroI GCCGGC 2 cut(s) 245, 533
KroNI GCCGGC 2 cut(s) 247, 535
KspI CCGCGG 1 cut(s) 756
Kzo9I GATC 2 cut(s) 513, 642
LmnI GCTCC 7 cut(s) 266, 321, 437, 580, 787, 824, 1111
Lsp1109I GCAGC 2 cut(s) 604, 889
LweI GCATC 4 cut(s) 267, 420, 588, 1093
MaeI CTAG 1 cut(s) 1047
MaeII ACGT 1 cut(s) 858
MalI GATC 2 cut(s) 515, 644
MboI GATC 2 cut(s) 513, 642
MflI RGATCY 1 cut(s) 642
MhlI GDGCHC 4 cut(s) 235, 576, 585, 792
MluCI AATT 2 cut(s) 494, 1095
Mly113I GGCGCC 3 cut(s) 243, 537, 813
MlyI GAGTC 2 cut(s) 6, 874
MmeI TCCRAC 1 cut(s) 198
MreI CGCCGGCG 1 cut(s) 245
MroNI GCCGGC 2 cut(s) 245, 533
MslI CAYNNNNRTG 1 cut(s) 569
MspA1I CMGCKG 4 cut(s) 408, 595, 755, 853
MspI CCGG 7 cut(s) 246, 264, 534, 606, 714, 822, 1109
MspR9I CCNGG 3 cut(s) 607, 625, 715
MvaI CCWGG 1 cut(s) 625
MvnI CGCG 2 cut(s) 332, 755
NaeI GCCGGC 2 cut(s) 247, 535
NarI GGCGCC 3 cut(s) 243, 537, 813
NciI CCSGG 2 cut(s) 607, 715
NcoI CCATGG 1 cut(s) 540
NdeII GATC 2 cut(s) 513, 642
NgoMIV GCCGGC 2 cut(s) 245, 533
NlaIII CATG 1 cut(s) 544
NmeAIII GCCGAG 2 cut(s) 812, 1014
PaqCI CACCTGC 2 cut(s) 473, 619
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PdiI GCCGGC 2 cut(s) 247, 535
PfeI GAWTC 2 cut(s) 943, 969
PflFI GACNNNGTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 165
PkrI GCNGC 9 cut(s) 251, 254, 257, 410, 594, 754, 812, 852, 904
PleI GAGTC 2 cut(s) 6, 874
PluTI GGCGCC 3 cut(s) 246, 540, 816
PpsI GAGTC 2 cut(s) 6, 874
PpuMI RGGWCCY 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 623
PspGI CCWGG 1 cut(s) 623
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 8 cut(s) 168, 231, 232, 609, 621, 667, 778, 986
PspPPI RGGWCCY 1 cut(s) 621
PstNI CAGNNNCTG 3 cut(s) 624, 946, 1008
PsuI RGATCY 1 cut(s) 642
PsyI GACNNNGTC 1 cut(s) 362
RsaI GTAC 2 cut(s) 743, 1028
RsaNI GTAC 2 cut(s) 742, 1027
RseI CAYNNNNRTG 1 cut(s) 569
SacI GAGCTC 1 cut(s) 585
SacII CCGCGG 1 cut(s) 756
SatI GCNGC 9 cut(s) 250, 253, 256, 409, 593, 753, 811, 851, 903
Sau3AI GATC 2 cut(s) 513, 642
Sau96I GGNCC 8 cut(s) 168, 231, 232, 609, 621, 667, 778, 986
ScaI AGTACT 1 cut(s) 743
SchI GAGTC 2 cut(s) 6, 874
ScrFI CCNGG 3 cut(s) 607, 625, 715
SduI GDGCHC 4 cut(s) 235, 576, 585, 792
SfaNI GCATC 4 cut(s) 267, 420, 588, 1093
SfoI GGCGCC 3 cut(s) 244, 538, 814
Sfr303I CCGCGG 1 cut(s) 756
SgrAI CRCCGGYG 1 cut(s) 245
SgrBI CCGCGG 1 cut(s) 756
SinI GGWCC 1 cut(s) 621
SmiMI CAYNNNNRTG 1 cut(s) 569
SmlI CTYRAG 2 cut(s) 368, 721
SmoI CTYRAG 2 cut(s) 368, 721
Sse9I AATT 2 cut(s) 494, 1095
SspDI GGCGCC 3 cut(s) 242, 536, 812
SspMI CTAG 1 cut(s) 1047
SstI GAGCTC 1 cut(s) 585
StyD4I CCNGG 3 cut(s) 605, 623, 713
StyI CCWWGG 5 cut(s) 189, 384, 540, 576, 816
TaaI ACNGT 2 cut(s) 934, 1004
TaiI ACGT 1 cut(s) 861
TaqI TCGA 6 cut(s) 225, 297, 357, 648, 738, 1038
TasI AATT 2 cut(s) 494, 1095
TatI WGTACW 1 cut(s) 741
TauI GCSGC 7 cut(s) 252, 255, 258, 411, 755, 813, 853
TfiI GAWTC 2 cut(s) 943, 969
TscAI CASTG 2 cut(s) 535, 1009
TseI GCWGC 2 cut(s) 592, 902
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 2 cut(s) 535, 1009
Tth111I GACNNNGTC 1 cut(s) 362
Van91I CCANNNNNTGG 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 621
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmiI GTMKAC 2 cut(s) 342, 453
XspI CTAG 1 cut(s) 1047
ZrmI AGTACT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.