Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009209

Physical Location & Seq

Genomic Coordinates Reverse (-)

2544147 .. 2545797

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1020700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAGGGTAGACTTTCAGCCTCTCTGGGCCTCCCCGCACCCAATCAAAACCACCACACTCAGTCGTCCAATGACTTCCACAACCTCTTCACCCATTTCATCACTCCAAATCCCCAAACTACCCTCACCCCTACCCAAAACCACATCCCATTCTTTGCCTCCACCACCACCAACACCACCTCCTCCACCCCCAATTGGGCCTCCATTACCCGACCCAGTACCCGCCCCACGACCCAAATCCTGCTCAAGAACCTCACGGTCTTCGAGCGCGCCCTCATCGGCGCAGGCGGCGGAGGCATAGCCGGAGCCTTCACCTACTTCTGCCTCCACCCTCTGGACACCATCAAGACCAAGCTCCAGACCAAAGGCGCCTCAGACATTTACGCAAACACCTTCGATGCAGTCCTCAAGACCTTCCAGACCAAGGGTATTTCGGGGTTTTACAGCGGCATCTCCGCCGTCATCGTCGGCTCCACCGCATCCTCCGCCGTCTACTTCGGCACCTGCGAACTGGGTAAGTCGGTTCTCTCCAAATTACCCAATTACCCTCCCGTTCTCATCCCTCCCACGGCCGGAGCCATGGGCAACATAGTCTCTTCCGCGATAATGGTGCCCAAGGAGCTCATCACGCAGCGGATGCAAGCCGGGGCCAAAGGGAGGTCGTGGCAGGTGCTGCTCAAGATCCTCGAAAACGACGGCTTTCTGGGTCTTTACGCAGGGTACTCTGCCACATTGCTTAGGAACTTGCCTGCGGGTGTGCTGAGCTATTCGTCGTTCGAGTACCTGAAATCGGCGGTGCTGAGCAAGACGAAGCAGACCAATTTGGAGCCGATACAGAGCGTGGTGTGCGGGGCGTTGGCCGGAGCAATATCGGCCTCCATTACGACGCCACTTGATGTGGTGAAGACGAGGCTGATGACTGGTGCGGCGCAGGGCGGGGTTTCGGGGACGGTGAAGCAGATTTTAATGGAGGAAGGGTGGGTGGGGTTTACGAGAGGAGTGGGGCCCAGAGTTCTTCACAGCGCTTGCTTTTCGGCATTGGGTTACTTTGCTTTCGAGACTGCCAGGCTTGCCATTCTGAATCAGTATATTAAGAGGAAGGAGCTGCAGCAGATGCAAGATTTTGGTATCAATGTTGGTGTTGGTGTTGCTTCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

387

Amino Acids

41.05

Weight (kDa)

9.57

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	97 - 177	1.6e-18	Mitochondrial carrier protein
Mito_carr	PF00153	190 - 267	7.5e-13	Mitochondrial carrier protein
Mito_carr	PF00153	275 - 359	8.2e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42130
fragaria_vesca	FvH4_2g14300 FvH4_2g14300
malus_domestica	MD05G1019200.v1.1 MD10G1020700.v1.1
prunus_persica	Prupe.8G024200_v2.0.a1 Prupe.8G024200_v2.0.a1
pyrus_communis	pycom05g01120 pycom10g01330
rosa_chinensis	RchiOBHm_Chr6g0276601
rosa_laevigata	RLG00000013387
rosa_multiflora	Rmu_sc0000969.1_g000001 Rmu_sc0028629.1_g000001 Rmu_sc0042856.1_g000001 Rmu_ssc0000059.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192160
rosa_rugosa	Rorug06G0102000
rosa_samantha	Rh6AG212700 Rh6BG217700 Rh6CG220000 Rh6DG209800
rosa_wichuraiana	Rw6G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	512, 658
Acc36I	ACCTGC	2 cut(s)	512, 658
AccB1I	GGYRCC	3 cut(s)	368, 500, 610
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccI	GTMKAC	2 cut(s)	10, 492
AccII	CGCG	2 cut(s)	270, 602
AclWI	GGATC	1 cut(s)	676
AcoI	YGGCCR	2 cut(s)	570, 858
AcyI	GRCGYC	2 cut(s)	369, 887
AfaI	GTAC	3 cut(s)	220, 722, 782
AfeI	AGCGCT	1 cut(s)	1024
AfiI	CCNNNNNNNGG	8 cut(s)	195, 196, 334, 424, 568, 572, 657, 790
AjnI	CCWGG	1 cut(s)	1064
AluBI	AGCT	4 cut(s)	355, 622, 765, 1105
AluI	AGCT	4 cut(s)	355, 622, 765, 1105
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	2 cut(s)	598, 1052
AlwI	GGATC	1 cut(s)	676
AlwNI	CAGNNNCTG	1 cut(s)	673
Aor51HI	AGCGCT	1 cut(s)	1024
AoxI	GGCC	7 cut(s)	28, 198, 570, 648, 858, 873, 1004
ApaI	GGGCCC	1 cut(s)	1008
ApeKI	GCWGC	4 cut(s)	631, 673, 1105, 1108
AspLEI	GCGC	6 cut(s)	270, 272, 284, 371, 931, 1025
AspS9I	GGNCC	5 cut(s)	28, 198, 648, 1004, 1005
AsuC2I	CCSGG	1 cut(s)	646
AsuHPI	GGTGA	5 cut(s)	82, 118, 304, 913, 964
BaeGI	GKGCMC	2 cut(s)	615, 1008
BanI	GGYRCC	3 cut(s)	368, 500, 610
BanII	GRGCYC	2 cut(s)	624, 1008
BbsI	GAAGAC	2 cut(s)	253, 911
Bbv12I	GWGCWC	1 cut(s)	624
BbvI	GCAGC	4 cut(s)	643, 660, 1092, 1120
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	4 cut(s)	443, 473, 585, 712
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BciT130I	CCWGG	1 cut(s)	1066
BcnI	CCSGG	1 cut(s)	646
BcoDI	GTCTC	2 cut(s)	598, 1052
BfmI	CTRYAG	1 cut(s)	1106
BfoI	RGCGCY	2 cut(s)	372, 1026
BfuAI	ACCTGC	2 cut(s)	512, 658
BisI	GCNGC	7 cut(s)	289, 448, 632, 674, 927, 1106, 1109
BlpI	GCTNAGC	2 cut(s)	761, 800
BlsI	GCNGC	7 cut(s)	290, 449, 633, 675, 928, 1107, 1110
Bme1390I	CCNGG	2 cut(s)	646, 1066
BmgT120I	GGNCC	5 cut(s)	28, 198, 648, 1004, 1005
BmrFI	CCNGG	2 cut(s)	646, 1066
BmrI	ACTGGG	2 cut(s)	210, 521
BmsI	GCATC	5 cut(s)	388, 459, 488, 627, 1104
BmuI	ACTGGG	2 cut(s)	210, 521
BpiI	GAAGAC	2 cut(s)	253, 911
BpmI	CTGGAG	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	737
Bpu1102I	GCTNAGC	2 cut(s)	761, 800
BpuEI	CTTGAG	3 cut(s)	230, 392, 662
BpuMI	CCSGG	1 cut(s)	646
BsaHI	GRCGYC	2 cut(s)	369, 887
BsaJI	CCNNGG	5 cut(s)	423, 567, 579, 615, 645
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 962, 992
Bsc4I	CCNNNNNNNGG	8 cut(s)	195, 196, 334, 424, 568, 572, 657, 790
Bse1I	ACTGG	3 cut(s)	216, 516, 925
Bse3DI	GCAATG	1 cut(s)	731
BseBI	CCWGG	1 cut(s)	1066
BseDI	CCNNGG	5 cut(s)	423, 567, 579, 615, 645
BseGI	GGATG	4 cut(s)	144, 479, 558, 642
BseLI	CCNNNNNNNGG	8 cut(s)	195, 196, 334, 424, 568, 572, 657, 790
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	4 cut(s)	74, 387, 752, 791
BseNI	ACTGG	3 cut(s)	216, 516, 925
BsePI	GCGCGC	1 cut(s)	268
BseRI	GAGGAG	2 cut(s)	172, 1011
BseSI	GKGCMC	2 cut(s)	615, 1008
BseX3I	CGGCCG	1 cut(s)	570
BseXI	GCAGC	4 cut(s)	643, 660, 1092, 1120
Bsh1236I	CGCG	2 cut(s)	270, 602
Bsh1285I	CGRYCG	1 cut(s)	573
BshFI	GGCC	7 cut(s)	30, 200, 572, 650, 860, 875, 1006
BshNI	GGYRCC	3 cut(s)	368, 500, 610
BsiEI	CGRYCG	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	624
BsiSI	CCGG	4 cut(s)	303, 573, 645, 861
BslFI	GGGAC	1 cut(s)	961
BslI	CCNNNNNNNGG	8 cut(s)	195, 196, 334, 424, 568, 572, 657, 790
BsmAI	GTCTC	2 cut(s)	598, 1052
BsmFI	GGGAC	1 cut(s)	961
BsnI	GGCC	7 cut(s)	30, 200, 572, 650, 860, 875, 1006
Bsp120I	GGGCCC	1 cut(s)	1004
Bsp1286I	GDGCHC	3 cut(s)	615, 624, 1008
Bsp143I	GATC	1 cut(s)	681
Bsp1720I	GCTNAGC	2 cut(s)	761, 800
Bsp19I	CCATGG	1 cut(s)	579
BspANI	GGCC	7 cut(s)	30, 200, 572, 650, 860, 875, 1006
BspCNI	CTCAG	4 cut(s)	73, 386, 753, 792
BspFNI	CGCG	2 cut(s)	270, 602
BspMAI	CTGCAG	1 cut(s)	1110
BspMI	ACCTGC	2 cut(s)	512, 658
BspPI	GGATC	1 cut(s)	676
BspT107I	GGYRCC	3 cut(s)	368, 500, 610
BsrDI	GCAATG	1 cut(s)	731
BsrI	ACTGG	3 cut(s)	216, 516, 925
BssECI	CCNNGG	5 cut(s)	423, 567, 579, 615, 645
BssHII	GCGCGC	1 cut(s)	268
BssMI	GATC	1 cut(s)	681
BssNI	GRCGYC	2 cut(s)	369, 887
BssT1I	CCWWGG	3 cut(s)	423, 579, 615
Bst2UI	CCWGG	1 cut(s)	1066
Bst4CI	ACNGT	2 cut(s)	259, 952
Bst6I	CTCTTC	2 cut(s)	92, 601
BstACI	GRCGYC	2 cut(s)	369, 887
BstAPI	GCANNNNNTGC	3 cut(s)	637, 673, 1114
BstC8I	GCNNGC	6 cut(s)	270, 286, 642, 750, 1027, 1071
BstDEI	CTNAG	5 cut(s)	60, 373, 737, 761, 800
BstDSI	CCRYGG	2 cut(s)	567, 579
BstF5I	GGATG	4 cut(s)	144, 479, 558, 642
BstFNI	CGCG	2 cut(s)	270, 602
BstH2I	RGCGCY	2 cut(s)	372, 1026
BstHHI	GCGC	6 cut(s)	270, 272, 284, 371, 931, 1025
BstKTI	GATC	1 cut(s)	684
BstMAI	GTCTC	2 cut(s)	598, 1052
BstMBI	GATC	1 cut(s)	681
BstMCI	CGRYCG	1 cut(s)	573
BstNI	CCWGG	1 cut(s)	1066
BstSCI	CCNGG	2 cut(s)	644, 1064
BstSFI	CTRYAG	1 cut(s)	1106
BstSLI	GKGCMC	2 cut(s)	615, 1008
BstUI	CGCG	2 cut(s)	270, 602
BstV1I	GCAGC	4 cut(s)	643, 660, 1092, 1120
BstV2I	GAAGAC	2 cut(s)	253, 911
BstX2I	RGATCY	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	681
BstZI	CGGCCG	1 cut(s)	570
BsuRI	GGCC	7 cut(s)	30, 200, 572, 650, 860, 875, 1006
BtgI	CCRYGG	2 cut(s)	567, 579
BtsCI	GGATG	4 cut(s)	144, 479, 558, 642
BveI	ACCTGC	2 cut(s)	512, 658
Cac8I	GCNNGC	6 cut(s)	270, 286, 642, 750, 1027, 1071
CaiI	CAGNNNCTG	1 cut(s)	673
CfoI	GCGC	6 cut(s)	270, 272, 284, 371, 931, 1025
Cfr13I	GGNCC	5 cut(s)	28, 198, 648, 1004, 1005
CseI	GACGC	1 cut(s)	895
Csp6I	GTAC	3 cut(s)	219, 721, 781
CviAII	CATG	1 cut(s)	580
CviQI	GTAC	3 cut(s)	219, 721, 781
DdeI	CTNAG	5 cut(s)	60, 373, 737, 761, 800
DinI	GGCGCC	1 cut(s)	370
DpnI	GATC	1 cut(s)	683
DpnII	GATC	1 cut(s)	681
EaeI	YGGCCR	2 cut(s)	570, 858
EagI	CGGCCG	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	92, 601
EarI	CTCTTC	2 cut(s)	92, 601
EciI	GGCGGA	3 cut(s)	306, 445, 475
Ecl136II	GAGCTC	1 cut(s)	622
EclXI	CGGCCG	1 cut(s)	570
Eco130I	CCWWGG	3 cut(s)	423, 579, 615
Eco24I	GRGCYC	2 cut(s)	624, 1008
Eco47III	AGCGCT	1 cut(s)	1024
Eco52I	CGGCCG	1 cut(s)	570
Eco53kI	GAGCTC	1 cut(s)	622
EcoICRI	GAGCTC	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	1004
EcoRII	CCWGG	1 cut(s)	1064
EcoT14I	CCWWGG	3 cut(s)	423, 579, 615
EcoT38I	GRGCYC	2 cut(s)	624, 1008
EgeI	GGCGCC	1 cut(s)	370
EheI	GGCGCC	1 cut(s)	370
ErhI	CCWWGG	3 cut(s)	423, 579, 615
FaeI	CATG	1 cut(s)	583
FaiI	YATR	4 cut(s)	299, 581, 590, 1089
FaqI	GGGAC	1 cut(s)	961
FatI	CATG	1 cut(s)	579
FauI	CCCGC	5 cut(s)	43, 230, 745, 842, 929
FblI	GTMKAC	2 cut(s)	10, 492
Fnu4HI	GCNGC	7 cut(s)	289, 448, 632, 674, 927, 1106, 1109
FokI	GGATG	4 cut(s)	131, 466, 545, 649
FriOI	GRGCYC	2 cut(s)	624, 1008
Fsp4HI	GCNGC	7 cut(s)	289, 448, 632, 674, 927, 1106, 1109
GlaI	GCGC	6 cut(s)	269, 271, 283, 370, 930, 1024
GluI	GCNGC	7 cut(s)	289, 448, 632, 674, 927, 1106, 1109
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	2 cut(s)	372, 1026
HaeIII	GGCC	7 cut(s)	30, 200, 572, 650, 860, 875, 1006
HapII	CCGG	4 cut(s)	303, 573, 645, 861
HgaI	GACGC	1 cut(s)	895
HhaI	GCGC	6 cut(s)	270, 272, 284, 371, 931, 1025
Hin1I	GRCGYC	2 cut(s)	369, 887
Hin1II	CATG	1 cut(s)	583
Hin6I	GCGC	6 cut(s)	268, 270, 282, 369, 929, 1023
HinP1I	GCGC	6 cut(s)	268, 270, 282, 369, 929, 1023
HinfI	GANTC	1 cut(s)	1081
HpaII	CCGG	4 cut(s)	303, 573, 645, 861
HphI	GGTGA	5 cut(s)	82, 118, 304, 913, 964
Hpy166II	GTNNAC	3 cut(s)	11, 493, 990
Hpy188I	TCNGA	2 cut(s)	376, 1080
Hpy188III	TCNNGA	8 cut(s)	247, 335, 346, 358, 409, 418, 679, 1057
Hpy8I	GTNNAC	3 cut(s)	11, 493, 990
Hpy99I	CGWCG	4 cut(s)	470, 698, 775, 889
HpyAV	CCTTC	5 cut(s)	319, 403, 424, 968, 1093
HpyCH4III	ACNGT	2 cut(s)	259, 952
HpyCH4V	TGCA	4 cut(s)	401, 640, 1108, 1117
HpyF3I	CTNAG	5 cut(s)	60, 373, 737, 761, 800
Hsp92I	GRCGYC	2 cut(s)	369, 887
Hsp92II	CATG	1 cut(s)	583
HspAI	GCGC	6 cut(s)	268, 270, 282, 369, 929, 1023
KasI	GGCGCC	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	681
LmnI	GCTCC	8 cut(s)	305, 360, 476, 575, 619, 826, 863, 1102
Lsp1109I	GCAGC	4 cut(s)	643, 660, 1092, 1120
LweI	GCATC	5 cut(s)	388, 459, 488, 627, 1104
MaeIII	GTNAC	1 cut(s)	1043
MalI	GATC	1 cut(s)	683
MboI	GATC	1 cut(s)	681
MboII	GAAGA	5 cut(s)	79, 253, 588, 916, 1007
MfeI	CAATTG	1 cut(s)	193
MflI	RGATCY	1 cut(s)	681
MhlI	GDGCHC	3 cut(s)	615, 624, 1008
MluCI	AATT	4 cut(s)	193, 533, 541, 820
Mly113I	GGCGCC	1 cut(s)	369
MseI	TTAA	2 cut(s)	965, 1092
MspA1I	CMGCKG	2 cut(s)	447, 634
MspI	CCGG	4 cut(s)	303, 573, 645, 861
MspR9I	CCNGG	2 cut(s)	646, 1066
MunI	CAATTG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	1066
MvnI	CGCG	2 cut(s)	270, 602
NarI	GGCGCC	1 cut(s)	369
NciI	CCSGG	1 cut(s)	646
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	1 cut(s)	681
NlaIII	CATG	1 cut(s)	583
PaqCI	CACCTGC	2 cut(s)	512, 658
PauI	GCGCGC	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	1081
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	7 cut(s)	290, 449, 633, 675, 928, 1107, 1110
PluTI	GGCGCC	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	1064
PspGI	CCWGG	1 cut(s)	1064
PspOMI	GGGCCC	1 cut(s)	1004
PspPI	GGNCC	5 cut(s)	28, 198, 648, 1004, 1005
PstI	CTGCAG	1 cut(s)	1110
PstNI	CAGNNNCTG	1 cut(s)	673
PsuI	RGATCY	1 cut(s)	681
PteI	GCGCGC	1 cut(s)	268
RsaI	GTAC	3 cut(s)	220, 722, 782
RsaNI	GTAC	3 cut(s)	219, 721, 781
SacI	GAGCTC	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	965, 1092
SatI	GCNGC	7 cut(s)	289, 448, 632, 674, 927, 1106, 1109
Sau3AI	GATC	1 cut(s)	681
Sau96I	GGNCC	5 cut(s)	28, 198, 648, 1004, 1005
ScrFI	CCNGG	2 cut(s)	646, 1066
SduI	GDGCHC	3 cut(s)	615, 624, 1008
SfaNI	GCATC	5 cut(s)	388, 459, 488, 627, 1104
SfcI	CTRYAG	1 cut(s)	1106
SfoI	GGCGCC	1 cut(s)	370
SmlI	CTYRAG	3 cut(s)	245, 407, 677
SmoI	CTYRAG	3 cut(s)	245, 407, 677
Sse9I	AATT	4 cut(s)	193, 533, 541, 820
SspDI	GGCGCC	1 cut(s)	368
SstI	GAGCTC	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	644, 1064
StyI	CCWWGG	3 cut(s)	423, 579, 615
TaaI	ACNGT	2 cut(s)	259, 952
TaqI	TCGA	5 cut(s)	264, 396, 687, 777, 1056
TasI	AATT	4 cut(s)	193, 533, 541, 820
TauI	GCSGC	3 cut(s)	291, 450, 929
TfiI	GAWTC	1 cut(s)	1081
Tru1I	TTAA	2 cut(s)	965, 1092
Tru9I	TTAA	2 cut(s)	965, 1092
TseI	GCWGC	4 cut(s)	631, 673, 1105, 1108
TspDTI	ATGAA	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	334
XmiI	GTMKAC	2 cut(s)	10, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.