Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009209

Physical Location & Seq

Genomic Coordinates Reverse (-)

33249202 .. 33250662

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGCCTCCAGCTCCCGCCCGCCCAAGGCCAAGTCCATAATGAAGAACCTCTCCGTCTTCGAGCGGGCCCTCATCGGCGCCGGCGGCGGCGGCATCGCCGGAGCCTTCACCTACTTCTGCCTCCACCCCCTCGACACCATCAAGACCAAGCTCCAGACCAAAGGCGCCTCCGAAGTCTACGCCAACGCCTTCGACGCCGTCCTCAAGACCTTCCAGACCAAGGGCGTTCTGGGGTTTTACAGCGGCATCTCCGCCGTCATCGTCGGCTCCACCGCTTCCTCCGCCGTCTACTTCGGCACCTGCGAGATGGGGAAGTCGTTTCTCTCCAAATTACCCAACTACCCCCGATCCTCATCCCTCCCACCGCCGGCGCCATGGGCAACATCGTCTCTTCGGCCATAATGGTGCCCAAGGAGCTCATCACGCAGCGGATGCAGGCCGGGGCCAGAGGCAGGTCATGGCAGGTGTTGCTGAAGATCCTCGAAAACGACGGCGTTTTGGGCCTCTACGCAGGCTACTCGGCAACCTTGCTCAGAAACTTGCCCGCCGGGGTCTTGAGCTACTCCTCCTTCGAGTACCTGAAAGCCGCCGTTCTGAGCAAGACCAAGCAGGCCCAAATGGAGCCCATTCAGAGCGTGATTTGCGGCGCGCTGGCCGGAGCCATCTCGGCCTCCATTACGACGCCGTTGGATGTTGTGAAGACGAGGCTGATGACTCAGAATGTGAATAAGGTGGCTGCTTTTGTGCAGAGTGGGGTTTCGGAGACGGTGAAGCAGATTCTGAAAGAAGAAGGGTTGGTGGGATTCACAAGAGGAATGGGGCCGAGGGTTCTTCATAGTGCCTGCTTTTCGGCATTGGGGTACTTTGCTTTCGAGACGGCTAGGCTTGCCATTTTGAATGAGTATATCAAGAGGAAGGAGTTGCAAGAAATTGCTGATGCTCCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

316

Amino Acids

35.51

Weight (kDa)

11.45

Isoelectric Point (pI)

75.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	122 - 199	1.3e-12	Mitochondrial carrier protein
Mito_carr	PF00153	207 - 298	3.5e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42130
fragaria_vesca	FvH4_2g14300 FvH4_2g14300
malus_domestica	MD05G1019200.v1.1 MD10G1020700.v1.1
prunus_persica	Prupe.8G024200_v2.0.a1 Prupe.8G024200_v2.0.a1
pyrus_communis	pycom05g01120 pycom10g01330
rosa_chinensis	RchiOBHm_Chr6g0276601
rosa_laevigata	RLG00000013387
rosa_multiflora	Rmu_sc0000969.1_g000001 Rmu_sc0028629.1_g000001 Rmu_sc0042856.1_g000001 Rmu_ssc0000059.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192160
rosa_rugosa	Rorug06G0102000
rosa_samantha	Rh6AG212700 Rh6BG217700 Rh6CG220000 Rh6DG209800
rosa_wichuraiana	Rw6G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	309, 454
Acc36I	ACCTGC	3 cut(s)	309, 444, 454
AccB1I	GGYRCC	5 cut(s)	78, 165, 297, 371, 406
AccBSI	CCGCTC	1 cut(s)	65
AccI	GTMKAC	2 cut(s)	178, 289
AccII	CGCG	1 cut(s)	650
AclWI	GGATC	2 cut(s)	343, 472
AcoI	YGGCCR	2 cut(s)	396, 654
AcuI	CTGAAG	1 cut(s)	494
AcyI	GRCGYC	5 cut(s)	79, 166, 196, 372, 683
AfaI	GTAC	2 cut(s)	578, 863
AfiI	CCNNNNNNNGG	4 cut(s)	26, 221, 368, 453
AgsI	TTSAA	1 cut(s)	898
AluBI	AGCT	4 cut(s)	13, 152, 418, 561
AluI	AGCT	4 cut(s)	13, 152, 418, 561
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	3 cut(s)	394, 758, 869
AlwI	GGATC	2 cut(s)	343, 472
AlwNI	CAGNNNCTG	1 cut(s)	781
ApaI	GGGCCC	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	427, 737
AspLEI	GCGC	5 cut(s)	81, 168, 374, 650, 652
AspS9I	GGNCC	7 cut(s)	4, 67, 68, 444, 502, 613, 821
AsuC2I	CCSGG	2 cut(s)	442, 550
AsuHPI	GGTGA	2 cut(s)	101, 781
BaeGI	GKGCMC	2 cut(s)	71, 411
BanI	GGYRCC	5 cut(s)	78, 165, 297, 371, 406
BanII	GRGCYC	3 cut(s)	71, 420, 627
BbsI	GAAGAC	2 cut(s)	50, 707
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	439, 724
BccI	CCATC	3 cut(s)	147, 302, 671
BceAI	ACGGC	7 cut(s)	183, 240, 270, 508, 575, 670, 894
BcgI	CGANNNNNNTGC	2 cut(s)	501, 535
BcnI	CCSGG	2 cut(s)	442, 550
BcoDI	GTCTC	3 cut(s)	394, 758, 869
BfaI	CTAG	1 cut(s)	882
BfoI	RGCGCY	3 cut(s)	82, 169, 375
BfuAI	ACCTGC	3 cut(s)	309, 444, 454
BglI	GCCNNNNNGGC	1 cut(s)	668
BisI	GCNGC	8 cut(s)	86, 89, 92, 245, 428, 588, 646, 738
BlsI	GCNGC	8 cut(s)	87, 90, 93, 246, 429, 589, 647, 739
Bme1390I	CCNGG	2 cut(s)	442, 550
BmgT120I	GGNCC	7 cut(s)	4, 67, 68, 444, 502, 613, 821
BmrFI	CCNGG	2 cut(s)	442, 550
BmsI	GCATC	4 cut(s)	103, 256, 423, 928
BpiI	GAAGAC	2 cut(s)	50, 707
BpmI	CTGGAG	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	189, 577
BpuMI	CCSGG	2 cut(s)	442, 550
BsaBI	GATNNNNATC	1 cut(s)	353
BsaHI	GRCGYC	5 cut(s)	79, 166, 196, 372, 683
BsaJI	CCNNGG	7 cut(s)	25, 220, 375, 411, 441, 549, 824
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 221, 368, 453
Bse118I	RCCGGY	2 cut(s)	81, 368
Bse8I	GATNNNNATC	1 cut(s)	353
BseDI	CCNNGG	7 cut(s)	25, 220, 375, 411, 441, 549, 824
BseGI	GGATG	3 cut(s)	354, 438, 697
BseJI	GATNNNNATC	1 cut(s)	353
BseLI	CCNNNNNNNGG	4 cut(s)	26, 221, 368, 453
BseMII	CTCAG	3 cut(s)	547, 587, 731
BsePI	GCGCGC	1 cut(s)	648
BseRI	GAGGAG	1 cut(s)	556
BseSI	GKGCMC	2 cut(s)	71, 411
BseXI	GCAGC	2 cut(s)	439, 724
BsgI	GTGCAG	1 cut(s)	767
Bsh1236I	CGCG	1 cut(s)	650
BshNI	GGYRCC	5 cut(s)	78, 165, 297, 371, 406
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	7 cut(s)	82, 100, 369, 441, 549, 657, 944
BslI	CCNNNNNNNGG	4 cut(s)	26, 221, 368, 453
BsmAI	GTCTC	3 cut(s)	394, 758, 869
BsmBI	CGTCTC	3 cut(s)	394, 758, 869
Bsp120I	GGGCCC	1 cut(s)	67
Bsp1286I	GDGCHC	4 cut(s)	71, 411, 420, 627
Bsp143I	GATC	2 cut(s)	348, 477
Bsp19I	CCATGG	1 cut(s)	375
BspCNI	CTCAG	3 cut(s)	546, 588, 730
BspFNI	CGCG	1 cut(s)	650
BspMI	ACCTGC	3 cut(s)	309, 444, 454
BspPI	GGATC	2 cut(s)	343, 472
BspT107I	GGYRCC	5 cut(s)	78, 165, 297, 371, 406
BsrBI	CCGCTC	1 cut(s)	65
BsrFI	RCCGGY	2 cut(s)	81, 368
BssAI	RCCGGY	2 cut(s)	81, 368
BssECI	CCNNGG	7 cut(s)	25, 220, 375, 411, 441, 549, 824
BssHII	GCGCGC	1 cut(s)	648
BssMI	GATC	2 cut(s)	348, 477
BssNI	GRCGYC	5 cut(s)	79, 166, 196, 372, 683
BssT1I	CCWWGG	4 cut(s)	25, 220, 375, 411
Bst4CI	ACNGT	1 cut(s)	769
Bst6I	CTCTTC	1 cut(s)	397
BstACI	GRCGYC	5 cut(s)	79, 166, 196, 372, 683
BstAPI	GCANNNNNTGC	2 cut(s)	433, 469
BstDEI	CTNAG	3 cut(s)	533, 596, 717
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	354, 438, 697
BstFNI	CGCG	1 cut(s)	650
BstH2I	RGCGCY	3 cut(s)	82, 169, 375
BstHHI	GCGC	5 cut(s)	81, 168, 374, 650, 652
BstKTI	GATC	2 cut(s)	351, 480
BstMAI	GTCTC	3 cut(s)	394, 758, 869
BstMBI	GATC	2 cut(s)	348, 477
BstSCI	CCNGG	2 cut(s)	440, 548
BstSLI	GKGCMC	2 cut(s)	71, 411
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	2 cut(s)	439, 724
BstV2I	GAAGAC	2 cut(s)	50, 707
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BtgI	CCRYGG	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	354, 438, 697
BveI	ACCTGC	3 cut(s)	309, 444, 454
CaiI	CAGNNNCTG	1 cut(s)	781
CfoI	GCGC	5 cut(s)	81, 168, 374, 650, 652
Cfr10I	RCCGGY	2 cut(s)	81, 368
Cfr13I	GGNCC	7 cut(s)	4, 67, 68, 444, 502, 613, 821
CseI	GACGC	2 cut(s)	204, 691
Csp6I	GTAC	2 cut(s)	577, 862
CviAII	CATG	2 cut(s)	376, 459
CviQI	GTAC	2 cut(s)	577, 862
DdeI	CTNAG	3 cut(s)	533, 596, 717
DinI	GGCGCC	3 cut(s)	80, 167, 373
DpnI	GATC	2 cut(s)	350, 479
DpnII	GATC	2 cut(s)	348, 477
EaeI	YGGCCR	2 cut(s)	396, 654
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
EciI	GGCGGA	2 cut(s)	242, 272
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	4 cut(s)	25, 220, 375, 411
Eco24I	GRGCYC	3 cut(s)	71, 420, 627
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	68
EcoT14I	CCWWGG	4 cut(s)	25, 220, 375, 411
EcoT38I	GRGCYC	3 cut(s)	71, 420, 627
EgeI	GGCGCC	3 cut(s)	80, 167, 373
EheI	GGCGCC	3 cut(s)	80, 167, 373
ErhI	CCWWGG	4 cut(s)	25, 220, 375, 411
Esp3I	CGTCTC	3 cut(s)	394, 758, 869
FaeI	CATG	2 cut(s)	379, 462
FaiI	YATR	6 cut(s)	39, 377, 401, 460, 837, 906
FatI	CATG	2 cut(s)	375, 458
FauI	CCCGC	4 cut(s)	24, 28, 58, 553
FblI	GTMKAC	2 cut(s)	178, 289
Fnu4HI	GCNGC	8 cut(s)	86, 89, 92, 245, 428, 588, 646, 738
FokI	GGATG	3 cut(s)	341, 445, 704
FriOI	GRGCYC	3 cut(s)	71, 420, 627
Fsp4HI	GCNGC	8 cut(s)	86, 89, 92, 245, 428, 588, 646, 738
FspBI	CTAG	1 cut(s)	882
GlaI	GCGC	5 cut(s)	80, 167, 373, 649, 651
GluI	GCNGC	8 cut(s)	86, 89, 92, 245, 428, 588, 646, 738
GsuI	CTGGAG	1 cut(s)	138
HaeII	RGCGCY	3 cut(s)	82, 169, 375
HapII	CCGG	7 cut(s)	82, 100, 369, 441, 549, 657, 944
HgaI	GACGC	2 cut(s)	204, 691
HhaI	GCGC	5 cut(s)	81, 168, 374, 650, 652
Hin1I	GRCGYC	5 cut(s)	79, 166, 196, 372, 683
Hin1II	CATG	2 cut(s)	379, 462
Hin6I	GCGC	5 cut(s)	79, 166, 372, 648, 650
HinP1I	GCGC	5 cut(s)	79, 166, 372, 648, 650
HinfI	GANTC	3 cut(s)	715, 778, 804
HpaII	CCGG	7 cut(s)	82, 100, 369, 441, 549, 657, 944
HphI	GGTGA	2 cut(s)	101, 781
Hpy166II	GTNNAC	2 cut(s)	179, 290
Hpy188I	TCNGA	7 cut(s)	173, 536, 597, 633, 720, 763, 783
Hpy188III	TCNNGA	7 cut(s)	143, 155, 206, 215, 556, 874, 910
Hpy8I	GTNNAC	2 cut(s)	179, 290
Hpy99I	CGWCG	4 cut(s)	198, 267, 494, 685
HpyAV	CCTTC	6 cut(s)	116, 200, 221, 580, 785, 910
HpyCH4III	ACNGT	1 cut(s)	769
HpyCH4V	TGCA	3 cut(s)	436, 748, 925
HpyF3I	CTNAG	3 cut(s)	533, 596, 717
Hsp92I	GRCGYC	5 cut(s)	79, 166, 196, 372, 683
Hsp92II	CATG	2 cut(s)	379, 462
HspAI	GCGC	5 cut(s)	79, 166, 372, 648, 650
KasI	GGCGCC	3 cut(s)	78, 165, 371
KroI	GCCGGC	2 cut(s)	81, 368
KroNI	GCCGGC	2 cut(s)	83, 370
Kzo9I	GATC	2 cut(s)	348, 477
LmnI	GCTCC	8 cut(s)	18, 102, 157, 273, 415, 622, 659, 946
Lsp1109I	GCAGC	2 cut(s)	439, 724
LweI	GCATC	4 cut(s)	103, 256, 423, 928
MaeI	CTAG	1 cut(s)	882
MalI	GATC	2 cut(s)	350, 479
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	2 cut(s)	348, 477
MboII	GAAGA	7 cut(s)	50, 56, 384, 487, 712, 800, 824
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	4 cut(s)	71, 411, 420, 627
MluCI	AATT	2 cut(s)	330, 930
Mly113I	GGCGCC	3 cut(s)	79, 166, 372
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	669
MreI	CGCCGGCG	2 cut(s)	81, 368
MroNI	GCCGGC	2 cut(s)	81, 368
MslI	CAYNNNNRTG	1 cut(s)	404
MspA1I	CMGCKG	2 cut(s)	244, 430
MspI	CCGG	7 cut(s)	82, 100, 369, 441, 549, 657, 944
MspR9I	CCNGG	2 cut(s)	442, 550
MvnI	CGCG	1 cut(s)	650
NaeI	GCCGGC	2 cut(s)	83, 370
NarI	GGCGCC	3 cut(s)	79, 166, 372
NciI	CCSGG	2 cut(s)	442, 550
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	2 cut(s)	348, 477
NgoMIV	GCCGGC	2 cut(s)	81, 368
NlaIII	CATG	2 cut(s)	379, 462
NmeAIII	GCCGAG	3 cut(s)	500, 647, 849
PaqCI	CACCTGC	2 cut(s)	309, 454
PauI	GCGCGC	1 cut(s)	648
PcsI	WCGNNNNNNNCGW	1 cut(s)	301
PdiI	GCCGGC	2 cut(s)	83, 370
PfeI	GAWTC	2 cut(s)	778, 804
PflFI	GACNNNGTC	1 cut(s)	198
PkrI	GCNGC	8 cut(s)	87, 90, 93, 246, 429, 589, 647, 739
PleI	GAGTC	1 cut(s)	709
PluTI	GGCGCC	3 cut(s)	82, 169, 375
PpsI	GAGTC	1 cut(s)	709
Psp124BI	GAGCTC	1 cut(s)	420
PspOMI	GGGCCC	1 cut(s)	67
PspPI	GGNCC	7 cut(s)	4, 67, 68, 444, 502, 613, 821
PstNI	CAGNNNCTG	1 cut(s)	781
PsuI	RGATCY	1 cut(s)	477
PsyI	GACNNNGTC	1 cut(s)	198
PteI	GCGCGC	1 cut(s)	648
RsaI	GTAC	2 cut(s)	578, 863
RsaNI	GTAC	2 cut(s)	577, 862
RseI	CAYNNNNRTG	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	420
SatI	GCNGC	8 cut(s)	86, 89, 92, 245, 428, 588, 646, 738
Sau3AI	GATC	2 cut(s)	348, 477
Sau96I	GGNCC	7 cut(s)	4, 67, 68, 444, 502, 613, 821
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	2 cut(s)	442, 550
SduI	GDGCHC	4 cut(s)	71, 411, 420, 627
SfaNI	GCATC	4 cut(s)	103, 256, 423, 928
SfoI	GGCGCC	3 cut(s)	80, 167, 373
SgrAI	CRCCGGYG	2 cut(s)	81, 368
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	2 cut(s)	204, 556
SmoI	CTYRAG	2 cut(s)	204, 556
Sse9I	AATT	2 cut(s)	330, 930
SspDI	GGCGCC	3 cut(s)	78, 165, 371
SspMI	CTAG	1 cut(s)	882
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	440, 548
StyI	CCWWGG	4 cut(s)	25, 220, 375, 411
TaaI	ACNGT	1 cut(s)	769
TaqI	TCGA	6 cut(s)	61, 133, 193, 483, 573, 873
TasI	AATT	2 cut(s)	330, 930
TauI	GCSGC	6 cut(s)	88, 91, 94, 247, 590, 648
TfiI	GAWTC	2 cut(s)	778, 804
TseI	GCWGC	2 cut(s)	427, 737
TspDTI	ATGAA	2 cut(s)	57, 824
TspGWI	ACGGA	1 cut(s)	44
Tth111I	GACNNNGTC	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	2 cut(s)	178, 289
XspI	CTAG	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.