Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009209

Physical Location & Seq

Genomic Coordinates Forward (+)

37378951 .. 37379862

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG209800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAAGAACCTCTCCGTCTTCGAGCGGGCCCTCATCGGCGCCGGCGGCGGCGGCATCGCCGGAGCCTTCACCTACTTCTGCCTCCACCCCCTCGACACCATCAAGACCAAGCTCCAGACCAAAGGCGCGTCCGAAGTCTACGCCAACGCCTTCGACGCCGTCCTCAAGACCTTCCAGACCAAGGGCGTTCTGGGGTTTTACAGCGGCATCTCCGCCGTCATCGTCGGCTCCACCGCTTCCTCCGCCGTCTACTTCGGCACCTGCGAGATGGGGAAGTCGTTTCTCTCCAAATTACCCAACTACCCCCCGATCCTCATCCCTCCCACCGCCGGCGCCATGGGCAACATCGTCTCTTCGGCCATAATGGTGCCCAAGGAGCTCATCACGCAGCGGATGCAGGCCGGGGCCAGAGGCAGGTCCTGGCAGGTGTTGCTGAAGATCCTCGAAAACGACGGCGTTTTGGGCCTCTACGCAGGCTACTCCGCAACCTTGCTCAGAAACTTGCCCGCCGGGGTCTTGAGCTACTCTTCCTTCGAGTACTTGAAAGCCGCGGTTCTGAGCAAGACCAACCAGGCCCAAATGGAGCCCATTCAGAGCGTGATTTGCGGCGCCTTGGCCGGAGCTATCTCGGCCTCCATTACGACGCCGCTGGATGTTGTGAAGACGAGGCTGATGACTCAGAATGTGAATAAGGCGGCTGCTTTTGTGCAGAGTGGGGTTTCGGAGACGGTGAAGCAGATTCTGAAAGAAGAAGGGCTGGTGGGATTCACAAGAGGAATGGGGCCGAGGGTTCTTCACAGTGCCTGCTTTTCCGCATTGGGGTACTTTGCTTTCGAGACGGCTAGGCTTGCGATTTTGAATGAGTATATCAAGAGGAAGGAGTTGCAAGAAATTGGTGATGCTCCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

303

Amino Acids

32.13

Weight (kDa)

9.34

Isoelectric Point (pI)

30.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	16 - 97	4.7e-19	Mitochondrial carrier protein
Mito_carr	PF00153	109 - 186	1.2e-12	Mitochondrial carrier protein
Mito_carr	PF00153	194 - 285	1.5e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42130
fragaria_vesca	FvH4_2g14300 FvH4_2g14300
malus_domestica	MD05G1019200.v1.1 MD10G1020700.v1.1
prunus_persica	Prupe.8G024200_v2.0.a1 Prupe.8G024200_v2.0.a1
pyrus_communis	pycom05g01120 pycom10g01330
rosa_chinensis	RchiOBHm_Chr6g0276601
rosa_laevigata	RLG00000013387
rosa_multiflora	Rmu_sc0000969.1_g000001 Rmu_sc0028629.1_g000001 Rmu_sc0042856.1_g000001 Rmu_ssc0000059.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192160
rosa_rugosa	Rorug06G0102000
rosa_samantha	Rh6AG212700 Rh6BG217700 Rh6CG220000 Rh6DG209800
rosa_wichuraiana	Rw6G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	269, 415
Acc36I	ACCTGC	3 cut(s)	269, 405, 415
AccB1I	GGYRCC	5 cut(s)	38, 257, 332, 367, 608
AccBSI	CCGCTC	1 cut(s)	25
AccI	GTMKAC	2 cut(s)	138, 249
AccII	CGCG	2 cut(s)	128, 551
AclWI	GGATC	2 cut(s)	304, 433
AcoI	YGGCCR	2 cut(s)	357, 615
AcuI	CTGAAG	1 cut(s)	455
AcyI	GRCGYC	5 cut(s)	39, 156, 333, 609, 644
AfaI	GTAC	2 cut(s)	539, 824
AfiI	CCNNNNNNNGG	4 cut(s)	181, 329, 414, 819
AgsI	TTSAA	2 cut(s)	544, 859
AjnI	CCWGG	2 cut(s)	419, 570
AluBI	AGCT	4 cut(s)	112, 379, 522, 623
AluI	AGCT	4 cut(s)	112, 379, 522, 623
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	3 cut(s)	355, 719, 830
AlwI	GGATC	2 cut(s)	304, 433
AlwNI	CAGNNNCTG	3 cut(s)	420, 742, 804
AoxI	GGCC	9 cut(s)	27, 357, 399, 405, 463, 573, 615, 630, 782
ApaI	GGGCCC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	388, 698
AspLEI	GCGC	4 cut(s)	41, 128, 335, 611
AspS9I	GGNCC	7 cut(s)	27, 28, 405, 417, 463, 574, 782
AsuC2I	CCSGG	2 cut(s)	403, 511
AsuHPI	GGTGA	3 cut(s)	61, 742, 908
AvaII	GGWCC	1 cut(s)	417
BaeGI	GKGCMC	2 cut(s)	31, 372
BanI	GGYRCC	5 cut(s)	38, 257, 332, 367, 608
BanII	GRGCYC	3 cut(s)	31, 381, 588
BbsI	GAAGAC	2 cut(s)	10, 668
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	400, 685
BccI	CCATC	2 cut(s)	107, 262
BceAI	ACGGC	5 cut(s)	143, 200, 230, 469, 855
BciT130I	CCWGG	2 cut(s)	421, 572
BcnI	CCSGG	2 cut(s)	403, 511
BcoDI	GTCTC	3 cut(s)	355, 719, 830
BfaI	CTAG	1 cut(s)	843
BfoI	RGCGCY	3 cut(s)	42, 336, 612
BfuAI	ACCTGC	3 cut(s)	269, 405, 415
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	4 cut(s)	403, 421, 511, 572
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	7 cut(s)	27, 28, 405, 417, 463, 574, 782
BmrFI	CCNGG	4 cut(s)	403, 421, 511, 572
BmsI	GCATC	4 cut(s)	63, 216, 384, 889
BpiI	GAAGAC	2 cut(s)	10, 668
BpmI	CTGGAG	1 cut(s)	98
BpuEI	CTTGAG	2 cut(s)	149, 538
BpuMI	CCSGG	2 cut(s)	403, 511
BsaBI	GATNNNNATC	1 cut(s)	314
BsaHI	GRCGYC	5 cut(s)	39, 156, 333, 609, 644
BsaJI	CCNNGG	8 cut(s)	180, 336, 372, 402, 510, 549, 612, 785
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 329, 414, 819
Bse118I	RCCGGY	2 cut(s)	41, 329
Bse8I	GATNNNNATC	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	421, 572
BseDI	CCNNGG	8 cut(s)	180, 336, 372, 402, 510, 549, 612, 785
BseGI	GGATG	3 cut(s)	315, 399, 658
BseJI	GATNNNNATC	1 cut(s)	314
BseLI	CCNNNNNNNGG	4 cut(s)	181, 329, 414, 819
BseMII	CTCAG	3 cut(s)	508, 548, 692
BseSI	GKGCMC	2 cut(s)	31, 372
BseXI	GCAGC	2 cut(s)	400, 685
BsgI	GTGCAG	1 cut(s)	728
Bsh1236I	CGCG	2 cut(s)	128, 551
BshFI	GGCC	9 cut(s)	29, 359, 401, 407, 465, 575, 617, 632, 784
BshNI	GGYRCC	5 cut(s)	38, 257, 332, 367, 608
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	7 cut(s)	42, 60, 330, 402, 510, 618, 905
BslI	CCNNNNNNNGG	4 cut(s)	181, 329, 414, 819
BsmAI	GTCTC	3 cut(s)	355, 719, 830
BsmBI	CGTCTC	3 cut(s)	355, 719, 830
BsnI	GGCC	9 cut(s)	29, 359, 401, 407, 465, 575, 617, 632, 784
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	4 cut(s)	31, 372, 381, 588
Bsp143I	GATC	2 cut(s)	309, 438
Bsp19I	CCATGG	1 cut(s)	336
BspANI	GGCC	9 cut(s)	29, 359, 401, 407, 465, 575, 617, 632, 784
BspCNI	CTCAG	3 cut(s)	507, 549, 691
BspFNI	CGCG	2 cut(s)	128, 551
BspMI	ACCTGC	3 cut(s)	269, 405, 415
BspPI	GGATC	2 cut(s)	304, 433
BspT107I	GGYRCC	5 cut(s)	38, 257, 332, 367, 608
BsrBI	CCGCTC	1 cut(s)	25
BsrFI	RCCGGY	2 cut(s)	41, 329
BssAI	RCCGGY	2 cut(s)	41, 329
BssECI	CCNNGG	8 cut(s)	180, 336, 372, 402, 510, 549, 612, 785
BssMI	GATC	2 cut(s)	309, 438
BssNI	GRCGYC	5 cut(s)	39, 156, 333, 609, 644
BssT1I	CCWWGG	4 cut(s)	180, 336, 372, 612
Bst2UI	CCWGG	2 cut(s)	421, 572
Bst4CI	ACNGT	2 cut(s)	730, 800
Bst6I	CTCTTC	2 cut(s)	358, 532
BstACI	GRCGYC	5 cut(s)	39, 156, 333, 609, 644
BstAPI	GCANNNNNTGC	2 cut(s)	394, 430
BstC8I	GCNNGC	8 cut(s)	27, 43, 331, 399, 475, 507, 805, 849
BstDEI	CTNAG	3 cut(s)	494, 557, 678
BstDSI	CCRYGG	2 cut(s)	336, 549
BstF5I	GGATG	3 cut(s)	315, 399, 658
BstFNI	CGCG	2 cut(s)	128, 551
BstH2I	RGCGCY	3 cut(s)	42, 336, 612
BstHHI	GCGC	4 cut(s)	41, 128, 335, 611
BstKTI	GATC	2 cut(s)	312, 441
BstMAI	GTCTC	3 cut(s)	355, 719, 830
BstMBI	GATC	2 cut(s)	309, 438
BstNI	CCWGG	2 cut(s)	421, 572
BstSCI	CCNGG	4 cut(s)	401, 419, 509, 570
BstSLI	GKGCMC	2 cut(s)	31, 372
BstUI	CGCG	2 cut(s)	128, 551
BstV1I	GCAGC	2 cut(s)	400, 685
BstV2I	GAAGAC	2 cut(s)	10, 668
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	9 cut(s)	29, 359, 401, 407, 465, 575, 617, 632, 784
BtgI	CCRYGG	2 cut(s)	336, 549
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	315, 399, 658
BtsIMutI	CAGTG	1 cut(s)	805
BveI	ACCTGC	3 cut(s)	269, 405, 415
Cac8I	GCNNGC	8 cut(s)	27, 43, 331, 399, 475, 507, 805, 849
CaiI	CAGNNNCTG	3 cut(s)	420, 742, 804
CfoI	GCGC	4 cut(s)	41, 128, 335, 611
Cfr10I	RCCGGY	2 cut(s)	41, 329
Cfr13I	GGNCC	7 cut(s)	27, 28, 405, 417, 463, 574, 782
Cfr42I	CCGCGG	1 cut(s)	552
CseI	GACGC	3 cut(s)	117, 164, 652
Csp6I	GTAC	2 cut(s)	538, 823
CviAII	CATG	1 cut(s)	337
CviQI	GTAC	2 cut(s)	538, 823
DdeI	CTNAG	3 cut(s)	494, 557, 678
DinI	GGCGCC	3 cut(s)	40, 334, 610
DpnI	GATC	2 cut(s)	311, 440
DpnII	GATC	2 cut(s)	309, 438
EaeI	YGGCCR	2 cut(s)	357, 615
Eam1104I	CTCTTC	2 cut(s)	358, 532
EarI	CTCTTC	2 cut(s)	358, 532
EciI	GGCGGA	2 cut(s)	202, 232
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	4 cut(s)	180, 336, 372, 612
Eco24I	GRGCYC	3 cut(s)	31, 381, 588
Eco47I	GGWCC	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	28, 417
EcoRII	CCWGG	2 cut(s)	419, 570
EcoT14I	CCWWGG	4 cut(s)	180, 336, 372, 612
EcoT38I	GRGCYC	3 cut(s)	31, 381, 588
EgeI	GGCGCC	3 cut(s)	40, 334, 610
EheI	GGCGCC	3 cut(s)	40, 334, 610
ErhI	CCWWGG	4 cut(s)	180, 336, 372, 612
Esp3I	CGTCTC	3 cut(s)	355, 719, 830
FaeI	CATG	1 cut(s)	340
FaiI	YATR	3 cut(s)	338, 362, 867
FatI	CATG	1 cut(s)	336
FauI	CCCGC	2 cut(s)	18, 514
FblI	GTMKAC	2 cut(s)	138, 249
FokI	GGATG	3 cut(s)	302, 406, 665
FriOI	GRGCYC	3 cut(s)	31, 381, 588
FspBI	CTAG	1 cut(s)	843
GlaI	GCGC	4 cut(s)	40, 127, 334, 610
GsuI	CTGGAG	1 cut(s)	98
HaeII	RGCGCY	3 cut(s)	42, 336, 612
HaeIII	GGCC	9 cut(s)	29, 359, 401, 407, 465, 575, 617, 632, 784
HapII	CCGG	7 cut(s)	42, 60, 330, 402, 510, 618, 905
HgaI	GACGC	3 cut(s)	117, 164, 652
HhaI	GCGC	4 cut(s)	41, 128, 335, 611
Hin1I	GRCGYC	5 cut(s)	39, 156, 333, 609, 644
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	4 cut(s)	39, 126, 333, 609
HinP1I	GCGC	4 cut(s)	39, 126, 333, 609
HinfI	GANTC	3 cut(s)	676, 739, 765
HpaII	CCGG	7 cut(s)	42, 60, 330, 402, 510, 618, 905
HphI	GGTGA	3 cut(s)	61, 742, 908
Hpy166II	GTNNAC	2 cut(s)	139, 250
Hpy188I	TCNGA	7 cut(s)	133, 497, 558, 594, 681, 724, 744
Hpy188III	TCNNGA	7 cut(s)	103, 115, 166, 175, 517, 835, 871
Hpy8I	GTNNAC	2 cut(s)	139, 250
Hpy99I	CGWCG	4 cut(s)	158, 227, 455, 646
HpyAV	CCTTC	6 cut(s)	76, 160, 181, 541, 746, 871
HpyCH4III	ACNGT	2 cut(s)	730, 800
HpyCH4V	TGCA	3 cut(s)	397, 709, 886
HpyF3I	CTNAG	3 cut(s)	494, 557, 678
Hsp92I	GRCGYC	5 cut(s)	39, 156, 333, 609, 644
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	4 cut(s)	39, 126, 333, 609
KasI	GGCGCC	3 cut(s)	38, 332, 608
KroI	GCCGGC	2 cut(s)	41, 329
KroNI	GCCGGC	2 cut(s)	43, 331
KspI	CCGCGG	1 cut(s)	552
Kzo9I	GATC	2 cut(s)	309, 438
LmnI	GCTCC	7 cut(s)	62, 117, 233, 376, 583, 620, 907
Lsp1109I	GCAGC	2 cut(s)	400, 685
LweI	GCATC	4 cut(s)	63, 216, 384, 889
MaeI	CTAG	1 cut(s)	843
MalI	GATC	2 cut(s)	311, 440
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	2 cut(s)	309, 438
MboII	GAAGA	8 cut(s)	10, 16, 345, 448, 519, 673, 761, 785
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	4 cut(s)	31, 372, 381, 588
MluCI	AATT	2 cut(s)	290, 891
Mly113I	GGCGCC	3 cut(s)	39, 333, 609
MlyI	GAGTC	1 cut(s)	670
MreI	CGCCGGCG	2 cut(s)	41, 329
MroNI	GCCGGC	2 cut(s)	41, 329
MslI	CAYNNNNRTG	1 cut(s)	365
MspA1I	CMGCKG	4 cut(s)	204, 391, 551, 649
MspI	CCGG	7 cut(s)	42, 60, 330, 402, 510, 618, 905
MspR9I	CCNGG	4 cut(s)	403, 421, 511, 572
MvaI	CCWGG	2 cut(s)	421, 572
MvnI	CGCG	2 cut(s)	128, 551
NaeI	GCCGGC	2 cut(s)	43, 331
NarI	GGCGCC	3 cut(s)	39, 333, 609
NciI	CCSGG	2 cut(s)	403, 511
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	2 cut(s)	309, 438
NgoMIV	GCCGGC	2 cut(s)	41, 329
NlaIII	CATG	1 cut(s)	340
NmeAIII	GCCGAG	2 cut(s)	608, 810
PaqCI	CACCTGC	2 cut(s)	269, 415
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdiI	GCCGGC	2 cut(s)	43, 331
PfeI	GAWTC	2 cut(s)	739, 765
PflFI	GACNNNGTC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	670
PluTI	GGCGCC	3 cut(s)	42, 336, 612
PpsI	GAGTC	1 cut(s)	670
PpuMI	RGGWCCY	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	419, 570
PspGI	CCWGG	2 cut(s)	419, 570
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	7 cut(s)	27, 28, 405, 417, 463, 574, 782
PspPPI	RGGWCCY	1 cut(s)	417
PstNI	CAGNNNCTG	3 cut(s)	420, 742, 804
PsuI	RGATCY	1 cut(s)	438
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	2 cut(s)	539, 824
RsaNI	GTAC	2 cut(s)	538, 823
RseI	CAYNNNNRTG	1 cut(s)	365
SacI	GAGCTC	1 cut(s)	381
SacII	CCGCGG	1 cut(s)	552
Sau3AI	GATC	2 cut(s)	309, 438
Sau96I	GGNCC	7 cut(s)	27, 28, 405, 417, 463, 574, 782
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	1 cut(s)	670
ScrFI	CCNGG	4 cut(s)	403, 421, 511, 572
SduI	GDGCHC	4 cut(s)	31, 372, 381, 588
SfaNI	GCATC	4 cut(s)	63, 216, 384, 889
SfoI	GGCGCC	3 cut(s)	40, 334, 610
Sfr303I	CCGCGG	1 cut(s)	552
SgrAI	CRCCGGYG	2 cut(s)	41, 329
SgrBI	CCGCGG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	164, 517
SmoI	CTYRAG	2 cut(s)	164, 517
Sse9I	AATT	2 cut(s)	290, 891
SspDI	GGCGCC	3 cut(s)	38, 332, 608
SspMI	CTAG	1 cut(s)	843
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	4 cut(s)	401, 419, 509, 570
StyI	CCWWGG	4 cut(s)	180, 336, 372, 612
TaaI	ACNGT	2 cut(s)	730, 800
TaqI	TCGA	6 cut(s)	21, 93, 153, 444, 534, 834
TasI	AATT	2 cut(s)	290, 891
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	8 cut(s)	48, 51, 54, 207, 551, 609, 649, 698
TfiI	GAWTC	2 cut(s)	739, 765
TscAI	CASTG	1 cut(s)	805
TseI	GCWGC	2 cut(s)	388, 698
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	805
Tth111I	GACNNNGTC	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	417
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmiI	GTMKAC	2 cut(s)	138, 249
XspI	CTAG	1 cut(s)	843
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.