Rh6AG212700

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
37953859 .. 37954983
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG212700.1

Sequence Viewer

Length: 1125 bp
ATGGAGAGCAGACTCTCCGCCTCTCTTGGCCTCCCCTCTCCAAACCCAGACCACCACCGCCGCCACCACTCTCAAACCTCCGATGACTTCCACAACCTCTTCACCCACTTCGCCTCCCCAACCACATCTCACATCCCATTCTTCGCCTCCACCACCACCACCGCCACCACCAAATGGGCCTCCAACACCCGCCCGCCCAAGGCCAAGTCCATAATGAAGAACCTCTCAGTCTTCGAGCGGGCCCTCATCGGCGCCGGCGGCGGCGGCATCGCCGGAGCCTTCACCTACTTCTGCCTCCACCCCCTCGACACCATCAAGACGAAGCTCCAGACCAAAGGCGCGTCCGAAGTCTACGCCAACGCCTTCGACGCCGTCCTCAAGACCTTCCAGGCCAAGGGCGTTCTGGGGTTCTACAGCGGCATCTCCGCCGTCATCGTCGGCTCCACCGCTTCCTCCGCCGTCTACTTCGGCACCTGCGAGATGGGCAAGTCGTTCCTCTCCAAATTACCCAACTACCCCGCGATCCTCATCCCTCCCACCGCCGGCGCCATGGGCAACATCGTCTCTTCGGCCATAATGGTGCCCAAGGAGCTCATCACGCAGCGGATGCAGGCCGGGGCCAGAGGCAGGTCCTGGCAGGTGTTGCTGAAGATCCTCGAAAACGACGGCGTTTTGGGCCTCTACGCTGGCTACTCCGCAACCTTGCTCAGAAACTTGCCCGCCGGGGTCTTGAGCTACTCTTCCTTCGAGTACTTGAAAGCCGCGGTTCTGAGCAAGACCAACCAGGCCCAAATGGAGCCCATTCAGAGCGTGATTTGCGGCGCCTTGGCCGGAGCTATCTCGGCCTCCATTACGACGCCGCTGGATGTTGTGAAGACGAGGCTGATGACTCAGAATGTGAATAAGGTGGCTGCTTTTGTGCAGAGTGGGGTTTCCGAGACGGTGAAGCAGATTCTGAAAGAAGAAGGGCTGGTGGGATTCACAAGAGGAATGGGGCCGAGGGTTCTTCACAGTGCCTGCTTTTCCGCATTGGGGTACTTTGCTTTCGAGACGGCTAAGCTTGCGATTTTGAATGAGTATATCAAGAGGAAGGAGTTGCAAGAAATTGGTCATGCTCCGGCTTGA

Protein Analysis

374

Amino Acids

39.97

Weight (kDa)

9.56

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 87 - 168 1.6e-18 Mitochondrial carrier protein
Mito_carr PF00153 180 - 257 2.1e-12 Mitochondrial carrier protein
Mito_carr PF00153 265 - 357 1.7e-21 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 482, 628
Acc36I ACCTGC 3 cut(s) 482, 618, 628
AccB1I GGYRCC 5 cut(s) 251, 470, 545, 580, 821
AccB7I CCANNNNNTGG 1 cut(s) 174
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 2 cut(s) 351, 462
AccII CGCG 3 cut(s) 341, 521, 764
AclWI GGATC 2 cut(s) 517, 646
AcoI YGGCCR 2 cut(s) 570, 828
AcuI CTGAAG 1 cut(s) 668
AcyI GRCGYC 5 cut(s) 252, 369, 546, 822, 857
AfaI GTAC 2 cut(s) 752, 1037
AfiI CCNNNNNNNGG 6 cut(s) 174, 199, 394, 542, 627, 1032
AgsI TTSAA 2 cut(s) 757, 1072
AjnI CCWGG 3 cut(s) 387, 632, 783
AluBI AGCT 5 cut(s) 325, 592, 735, 836, 1060
AluI AGCT 5 cut(s) 325, 592, 735, 836, 1060
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 3 cut(s) 568, 932, 1043
AlwI GGATC 2 cut(s) 517, 646
AlwNI CAGNNNCTG 3 cut(s) 633, 955, 1017
ApaI GGGCCC 1 cut(s) 244
ApeKI GCWGC 2 cut(s) 601, 911
AspLEI GCGC 4 cut(s) 254, 341, 548, 824
AspS9I GGNCC 8 cut(s) 177, 240, 241, 618, 630, 676, 787, 995
AsuC2I CCSGG 2 cut(s) 616, 724
AsuHPI GGTGA 3 cut(s) 94, 274, 955
AvaII GGWCC 1 cut(s) 630
BaeGI GKGCMC 2 cut(s) 244, 585
BanI GGYRCC 5 cut(s) 251, 470, 545, 580, 821
BanII GRGCYC 3 cut(s) 244, 594, 801
BbsI GAAGAC 2 cut(s) 223, 881
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 2 cut(s) 613, 898
BccI CCATC 2 cut(s) 320, 475
BceAI ACGGC 5 cut(s) 356, 413, 443, 682, 1068
BciT130I CCWGG 3 cut(s) 389, 634, 785
BcnI CCSGG 2 cut(s) 616, 724
BcoDI GTCTC 3 cut(s) 568, 932, 1043
BfmI CTRYAG 1 cut(s) 412
BfoI RGCGCY 3 cut(s) 255, 549, 825
BfuAI ACCTGC 3 cut(s) 482, 618, 628
BlpI GCTNAGC 1 cut(s) 1056
BmcAI AGTACT 1 cut(s) 752
Bme1390I CCNGG 5 cut(s) 389, 616, 634, 724, 785
Bme18I GGWCC 1 cut(s) 630
BmgT120I GGNCC 8 cut(s) 177, 240, 241, 618, 630, 676, 787, 995
BmrFI CCNGG 5 cut(s) 389, 616, 634, 724, 785
BmsI GCATC 3 cut(s) 276, 429, 597
BpiI GAAGAC 2 cut(s) 223, 881
BpmI CTGGAG 1 cut(s) 311
Bpu1102I GCTNAGC 1 cut(s) 1056
BpuEI CTTGAG 2 cut(s) 362, 751
BpuMI CCSGG 2 cut(s) 616, 724
BsaBI GATNNNNATC 1 cut(s) 527
BsaHI GRCGYC 5 cut(s) 252, 369, 546, 822, 857
BsaJI CCNNGG 9 cut(s) 198, 393, 549, 585, 615, 723, 762, 825, 998
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 6 cut(s) 174, 199, 394, 542, 627, 1032
Bse118I RCCGGY 2 cut(s) 254, 542
Bse8I GATNNNNATC 1 cut(s) 527
BseBI CCWGG 3 cut(s) 389, 634, 785
BseDI CCNNGG 9 cut(s) 198, 393, 549, 585, 615, 723, 762, 825, 998
BseGI GGATG 4 cut(s) 132, 528, 612, 871
BseJI GATNNNNATC 1 cut(s) 527
BseLI CCNNNNNNNGG 6 cut(s) 174, 199, 394, 542, 627, 1032
BseMII CTCAG 4 cut(s) 240, 721, 761, 905
BseSI GKGCMC 2 cut(s) 244, 585
BseXI GCAGC 2 cut(s) 613, 898
BsgI GTGCAG 1 cut(s) 941
Bsh1236I CGCG 3 cut(s) 341, 521, 764
BshNI GGYRCC 5 cut(s) 251, 470, 545, 580, 821
BsiHKAI GWGCWC 1 cut(s) 594
BsiSI CCGG 7 cut(s) 255, 273, 543, 615, 723, 831, 1118
BslI CCNNNNNNNGG 6 cut(s) 174, 199, 394, 542, 627, 1032
BsmAI GTCTC 3 cut(s) 568, 932, 1043
BsmBI CGTCTC 3 cut(s) 568, 932, 1043
Bsp120I GGGCCC 1 cut(s) 240
Bsp1286I GDGCHC 4 cut(s) 244, 585, 594, 801
Bsp143I GATC 2 cut(s) 522, 651
Bsp1720I GCTNAGC 1 cut(s) 1056
Bsp19I CCATGG 1 cut(s) 549
BspCNI CTCAG 4 cut(s) 239, 720, 762, 904
BspFNI CGCG 3 cut(s) 341, 521, 764
BspMI ACCTGC 3 cut(s) 482, 618, 628
BspPI GGATC 2 cut(s) 517, 646
BspT107I GGYRCC 5 cut(s) 251, 470, 545, 580, 821
BsrBI CCGCTC 1 cut(s) 238
BsrFI RCCGGY 2 cut(s) 254, 542
BssAI RCCGGY 2 cut(s) 254, 542
BssECI CCNNGG 9 cut(s) 198, 393, 549, 585, 615, 723, 762, 825, 998
BssMI GATC 2 cut(s) 522, 651
BssNI GRCGYC 5 cut(s) 252, 369, 546, 822, 857
BssT1I CCWWGG 5 cut(s) 198, 393, 549, 585, 825
Bst2UI CCWGG 3 cut(s) 389, 634, 785
Bst4CI ACNGT 2 cut(s) 943, 1013
Bst6I CTCTTC 3 cut(s) 104, 571, 745
BstACI GRCGYC 5 cut(s) 252, 369, 546, 822, 857
BstAPI GCANNNNNTGC 2 cut(s) 607, 643
BstC8I GCNNGC 9 cut(s) 194, 240, 256, 544, 612, 688, 720, 1018, 1062
BstDEI CTNAG 5 cut(s) 226, 707, 770, 891, 1056
BstDSI CCRYGG 2 cut(s) 549, 762
BstF5I GGATG 4 cut(s) 132, 528, 612, 871
BstFNI CGCG 3 cut(s) 341, 521, 764
BstH2I RGCGCY 3 cut(s) 255, 549, 825
BstHHI GCGC 4 cut(s) 254, 341, 548, 824
BstKTI GATC 2 cut(s) 525, 654
BstMAI GTCTC 3 cut(s) 568, 932, 1043
BstMBI GATC 2 cut(s) 522, 651
BstNI CCWGG 3 cut(s) 389, 634, 785
BstSCI CCNGG 5 cut(s) 387, 614, 632, 722, 783
BstSFI CTRYAG 1 cut(s) 412
BstSLI GKGCMC 2 cut(s) 244, 585
BstUI CGCG 3 cut(s) 341, 521, 764
BstV1I GCAGC 2 cut(s) 613, 898
BstV2I GAAGAC 2 cut(s) 223, 881
BstX2I RGATCY 1 cut(s) 651
BstYI RGATCY 1 cut(s) 651
BtgI CCRYGG 2 cut(s) 549, 762
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 4 cut(s) 132, 528, 612, 871
BtsIMutI CAGTG 1 cut(s) 1018
BveI ACCTGC 3 cut(s) 482, 618, 628
Cac8I GCNNGC 9 cut(s) 194, 240, 256, 544, 612, 688, 720, 1018, 1062
CaiI CAGNNNCTG 3 cut(s) 633, 955, 1017
CfoI GCGC 4 cut(s) 254, 341, 548, 824
Cfr10I RCCGGY 2 cut(s) 254, 542
Cfr13I GGNCC 8 cut(s) 177, 240, 241, 618, 630, 676, 787, 995
Cfr42I CCGCGG 1 cut(s) 765
CseI GACGC 3 cut(s) 330, 377, 865
Csp6I GTAC 2 cut(s) 751, 1036
CviAII CATG 2 cut(s) 550, 1112
CviQI GTAC 2 cut(s) 751, 1036
DdeI CTNAG 5 cut(s) 226, 707, 770, 891, 1056
DinI GGCGCC 3 cut(s) 253, 547, 823
DpnI GATC 2 cut(s) 524, 653
DpnII GATC 2 cut(s) 522, 651
EaeI YGGCCR 2 cut(s) 570, 828
Eam1104I CTCTTC 3 cut(s) 104, 571, 745
EarI CTCTTC 3 cut(s) 104, 571, 745
EciI GGCGGA 3 cut(s) 7, 415, 445
Ecl136II GAGCTC 1 cut(s) 592
Eco130I CCWWGG 5 cut(s) 198, 393, 549, 585, 825
Eco24I GRGCYC 3 cut(s) 244, 594, 801
Eco47I GGWCC 1 cut(s) 630
Eco53kI GAGCTC 1 cut(s) 592
Eco57I CTGAAG 1 cut(s) 668
EcoICRI GAGCTC 1 cut(s) 592
EcoO109I RGGNCCY 2 cut(s) 241, 630
EcoRII CCWGG 3 cut(s) 387, 632, 783
EcoT14I CCWWGG 5 cut(s) 198, 393, 549, 585, 825
EcoT38I GRGCYC 3 cut(s) 244, 594, 801
EgeI GGCGCC 3 cut(s) 253, 547, 823
EheI GGCGCC 3 cut(s) 253, 547, 823
ErhI CCWWGG 5 cut(s) 198, 393, 549, 585, 825
Esp3I CGTCTC 3 cut(s) 568, 932, 1043
FaeI CATG 2 cut(s) 553, 1115
FaiI YATR 5 cut(s) 212, 551, 575, 1080, 1113
FatI CATG 2 cut(s) 549, 1111
FauI CCCGC 5 cut(s) 197, 201, 231, 526, 727
FblI GTMKAC 2 cut(s) 351, 462
FokI GGATG 4 cut(s) 119, 515, 619, 878
FriOI GRGCYC 3 cut(s) 244, 594, 801
GlaI GCGC 4 cut(s) 253, 340, 547, 823
GsuI CTGGAG 1 cut(s) 311
HaeII RGCGCY 3 cut(s) 255, 549, 825
HapII CCGG 7 cut(s) 255, 273, 543, 615, 723, 831, 1118
HgaI GACGC 3 cut(s) 330, 377, 865
HhaI GCGC 4 cut(s) 254, 341, 548, 824
Hin1I GRCGYC 5 cut(s) 252, 369, 546, 822, 857
Hin1II CATG 2 cut(s) 553, 1115
Hin6I GCGC 4 cut(s) 252, 339, 546, 822
HinP1I GCGC 4 cut(s) 252, 339, 546, 822
HindIII AAGCTT 1 cut(s) 1058
HinfI GANTC 4 cut(s) 12, 889, 952, 978
HpaII CCGG 7 cut(s) 255, 273, 543, 615, 723, 831, 1118
HphI GGTGA 3 cut(s) 94, 274, 955
Hpy166II GTNNAC 2 cut(s) 352, 463
Hpy188I TCNGA 8 cut(s) 82, 346, 710, 771, 807, 894, 937, 957
Hpy188III TCNNGA 6 cut(s) 316, 328, 379, 730, 1048, 1084
Hpy8I GTNNAC 2 cut(s) 352, 463
Hpy99I CGWCG 4 cut(s) 371, 440, 668, 859
HpyAV CCTTC 6 cut(s) 289, 373, 394, 754, 959, 1084
HpyCH4III ACNGT 2 cut(s) 943, 1013
HpyCH4V TGCA 3 cut(s) 610, 922, 1099
HpyF3I CTNAG 5 cut(s) 226, 707, 770, 891, 1056
Hsp92I GRCGYC 5 cut(s) 252, 369, 546, 822, 857
Hsp92II CATG 2 cut(s) 553, 1115
HspAI GCGC 4 cut(s) 252, 339, 546, 822
KasI GGCGCC 3 cut(s) 251, 545, 821
KroI GCCGGC 2 cut(s) 254, 542
KroNI GCCGGC 2 cut(s) 256, 544
KspI CCGCGG 1 cut(s) 765
Kzo9I GATC 2 cut(s) 522, 651
LmnI GCTCC 7 cut(s) 275, 330, 446, 589, 796, 833, 1120
Lsp1109I GCAGC 2 cut(s) 613, 898
LweI GCATC 3 cut(s) 276, 429, 597
MalI GATC 2 cut(s) 524, 653
MbiI CCGCTC 1 cut(s) 238
MboI GATC 2 cut(s) 522, 651
MflI RGATCY 1 cut(s) 651
MhlI GDGCHC 4 cut(s) 244, 585, 594, 801
MluCI AATT 2 cut(s) 503, 1104
Mly113I GGCGCC 3 cut(s) 252, 546, 822
MlyI GAGTC 2 cut(s) 6, 883
MmeI TCCRAC 1 cut(s) 207
MreI CGCCGGCG 2 cut(s) 254, 542
MroNI GCCGGC 2 cut(s) 254, 542
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 4 cut(s) 417, 604, 764, 862
MspI CCGG 7 cut(s) 255, 273, 543, 615, 723, 831, 1118
MspR9I CCNGG 5 cut(s) 389, 616, 634, 724, 785
MvaI CCWGG 3 cut(s) 389, 634, 785
MvnI CGCG 3 cut(s) 341, 521, 764
NaeI GCCGGC 2 cut(s) 256, 544
NarI GGCGCC 3 cut(s) 252, 546, 822
NciI CCSGG 2 cut(s) 616, 724
NcoI CCATGG 1 cut(s) 549
NdeII GATC 2 cut(s) 522, 651
NgoMIV GCCGGC 2 cut(s) 254, 542
NlaIII CATG 2 cut(s) 553, 1115
NmeAIII GCCGAG 2 cut(s) 821, 1023
PaqCI CACCTGC 2 cut(s) 482, 628
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PdiI GCCGGC 2 cut(s) 256, 544
PfeI GAWTC 2 cut(s) 952, 978
PflFI GACNNNGTC 1 cut(s) 371
PflMI CCANNNNNTGG 1 cut(s) 174
PleI GAGTC 2 cut(s) 6, 883
PluTI GGCGCC 3 cut(s) 255, 549, 825
PpsI GAGTC 2 cut(s) 6, 883
PpuMI RGGWCCY 1 cut(s) 630
Psp124BI GAGCTC 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 630
Psp6I CCWGG 3 cut(s) 387, 632, 783
PspGI CCWGG 3 cut(s) 387, 632, 783
PspOMI GGGCCC 1 cut(s) 240
PspPI GGNCC 8 cut(s) 177, 240, 241, 618, 630, 676, 787, 995
PspPPI RGGWCCY 1 cut(s) 630
PstNI CAGNNNCTG 3 cut(s) 633, 955, 1017
PsuI RGATCY 1 cut(s) 651
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 2 cut(s) 752, 1037
RsaNI GTAC 2 cut(s) 751, 1036
RseI CAYNNNNRTG 1 cut(s) 578
SacI GAGCTC 1 cut(s) 594
SacII CCGCGG 1 cut(s) 765
Sau3AI GATC 2 cut(s) 522, 651
Sau96I GGNCC 8 cut(s) 177, 240, 241, 618, 630, 676, 787, 995
ScaI AGTACT 1 cut(s) 752
SchI GAGTC 2 cut(s) 6, 883
ScrFI CCNGG 5 cut(s) 389, 616, 634, 724, 785
SduI GDGCHC 4 cut(s) 244, 585, 594, 801
SfaNI GCATC 3 cut(s) 276, 429, 597
SfcI CTRYAG 1 cut(s) 412
SfoI GGCGCC 3 cut(s) 253, 547, 823
Sfr303I CCGCGG 1 cut(s) 765
SgrAI CRCCGGYG 2 cut(s) 254, 542
SgrBI CCGCGG 1 cut(s) 765
SinI GGWCC 1 cut(s) 630
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 2 cut(s) 377, 730
SmoI CTYRAG 2 cut(s) 377, 730
Sse9I AATT 2 cut(s) 503, 1104
SspDI GGCGCC 3 cut(s) 251, 545, 821
SstI GAGCTC 1 cut(s) 594
StyD4I CCNGG 5 cut(s) 387, 614, 632, 722, 783
StyI CCWWGG 5 cut(s) 198, 393, 549, 585, 825
TaaI ACNGT 2 cut(s) 943, 1013
TaqI TCGA 6 cut(s) 234, 306, 366, 657, 747, 1047
TasI AATT 2 cut(s) 503, 1104
TatI WGTACW 1 cut(s) 750
TauI GCSGC 8 cut(s) 63, 261, 264, 267, 420, 764, 822, 862
TfiI GAWTC 2 cut(s) 952, 978
TscAI CASTG 1 cut(s) 1018
TseI GCWGC 2 cut(s) 601, 911
TspDTI ATGAA 1 cut(s) 230
TspRI CASTG 1 cut(s) 1018
Tth111I GACNNNGTC 1 cut(s) 371
Van91I CCANNNNNTGG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 630
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmiI GTMKAC 2 cut(s) 351, 462
ZrmI AGTACT 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.