Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042856.1

Orthogroup ID

OG0009209

Physical Location & Seq

Genomic Coordinates Reverse (-)

811 .. 1143

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042856.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggagcccattcagagcgtgatttgcggcgccttggccggagctatctcggcctccattacgacgccgctggatgttgtgaagacgaggctgatgactcagaatgtgaataaggtggctgcttttgtgcagagtggggtttcggagacggtgaagcagattctgaaagaagaagggctggtgggattcacaagaggaatggggccgagggttcttcacagtgcctgcttttccgcattggggtactttgctttcgagaccgctaggcttgcgattttgaatgagtatatcaagaggaaggagttgcaagaaattggtcatgctccggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

110

Amino Acids

11.81

Weight (kDa)

8.69

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42130
fragaria_vesca	FvH4_2g14300 FvH4_2g14300
malus_domestica	MD05G1019200.v1.1 MD10G1020700.v1.1
prunus_persica	Prupe.8G024200_v2.0.a1 Prupe.8G024200_v2.0.a1
pyrus_communis	pycom05g01120 pycom10g01330
rosa_chinensis	RchiOBHm_Chr6g0276601
rosa_laevigata	RLG00000013387
rosa_multiflora	Rmu_sc0000969.1_g000001 Rmu_sc0028629.1_g000001 Rmu_sc0042856.1_g000001 Rmu_ssc0000059.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192160
rosa_rugosa	Rorug06G0102000
rosa_samantha	Rh6AG212700 Rh6BG217700 Rh6CG220000 Rh6DG209800
rosa_wichuraiana	Rw6G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AciI	CCGC	4 cut(s)	27, 68, 234, 261
AcoI	YGGCCR	1 cut(s)	36
AcyI	GRCGYC	2 cut(s)	30, 65
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	2 cut(s)	140, 251
AlwNI	CAGNNNCTG	2 cut(s)	163, 225
AoxI	GGCC	3 cut(s)	36, 51, 203
ApeKI	GCWGC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	140, 251
BfaI	CTAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	3 cut(s)	28, 68, 120
BlsI	GCNGC	3 cut(s)	29, 69, 121
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	3 cut(s)	6, 31, 204
BpiI	GAAGAC	1 cut(s)	89
BsaHI	GRCGYC	2 cut(s)	30, 65
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	33, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	33, 206
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	38, 53, 205
BshNI	GGYRCC	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	39, 326
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	140, 251
BsmBI	CGTCTC	1 cut(s)	140
BsnI	GGCC	3 cut(s)	38, 53, 205
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	9
BspACI	CCGC	4 cut(s)	27, 68, 234, 261
BspANI	GGCC	3 cut(s)	38, 53, 205
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	6, 31, 204
BspT107I	GGYRCC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	33, 206
BssNI	GRCGYC	2 cut(s)	30, 65
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	151, 221
BstACI	GRCGYC	2 cut(s)	30, 65
BstC8I	GCNNGC	2 cut(s)	226, 270
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstMAI	GTCTC	2 cut(s)	140, 251
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 50, 269
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	89
BsuRI	GGCC	3 cut(s)	38, 53, 205
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	226, 270
CaiI	CAGNNNCTG	2 cut(s)	163, 225
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	320
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	99
DinI	GGCGCC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	1 cut(s)	323
FaiI	YATR	2 cut(s)	288, 321
FatI	CATG	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	28, 68, 120
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	28, 68, 120
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	3 cut(s)	28, 68, 120
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	38, 53, 205
HapII	CCGG	2 cut(s)	39, 326
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	2 cut(s)	30, 65
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	3 cut(s)	97, 160, 186
HpaII	CCGG	2 cut(s)	39, 326
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	15, 102, 145, 165
Hpy188III	TCNNGA	2 cut(s)	256, 292
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	2 cut(s)	167, 292
HpyCH4III	ACNGT	2 cut(s)	151, 221
HpyCH4V	TGCA	2 cut(s)	130, 307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 50, 269
HpyF3I	CTNAG	1 cut(s)	99
Hsp92I	GRCGYC	2 cut(s)	30, 65
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	30
KasI	GGCGCC	1 cut(s)	29
LmnI	GCTCC	3 cut(s)	4, 41, 328
LpnPI	CCDG	4 cut(s)	52, 56, 164, 238
Lsp1109I	GCAGC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	264
MboII	GAAGA	3 cut(s)	94, 182, 206
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	312
Mly113I	GGCGCC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	5 cut(s)	64, 81, 188, 201, 288
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	2 cut(s)	39, 326
MwoI	GCNNNNNNNGC	3 cut(s)	24, 50, 269
NarI	GGCGCC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	3 cut(s)	6, 31, 204
NmeAIII	GCCGAG	2 cut(s)	29, 231
PfeI	GAWTC	2 cut(s)	160, 186
PkrI	GCNGC	3 cut(s)	29, 69, 121
PleI	GAGTC	1 cut(s)	91
PluTI	GGCGCC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	6, 31, 204
PspPI	GGNCC	1 cut(s)	203
PstNI	CAGNNNCTG	2 cut(s)	163, 225
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SatI	GCNGC	3 cut(s)	28, 68, 120
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	2 cut(s)	46, 117
SfoI	GGCGCC	1 cut(s)	31
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	4 cut(s)	27, 68, 234, 261
SspDI	GGCGCC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	151, 221
TaqI	TCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	312
TauI	GCSGC	2 cut(s)	30, 70
TfiI	GAWTC	2 cut(s)	160, 186
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	119
TspRI	CASTG	1 cut(s)	226
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.