Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009209

Physical Location & Seq

Genomic Coordinates Reverse (-)

3362971 .. 3364116

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1019200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGGGCAGACTCTCAGCCTCTCTGGGCCTCCCTGCACCCAATCAAAACCACCACTCTAAGTCCCCCAATGACTTCCAAAACCTCTTCACCCATTTCATCACTCCAAATTCCCAAACTACCCTCACCCTCACCCCTACAGAAAACCACATCCCATTCTTTGCCTCCACCTCCTCCACCCCCAATTGGGCCTCCATTACCCGACCCAGTACCCGCCCCAAGACCCAAGTCTTACTCAAGAATCTCACGGTCTTCGAGCGTGCCCTCATCGGCGCAGGCGGCGGTGGTATCGCCGGAGCCTTCACCTACTTCTGCCTCCACCCTCTGGACACCATCAAGACCAAGCTCCAGACCAAAGGCGCCTCAGACATTTACGCAAGCACCTTCGATGCAGTCCTCAAAACATTCCAGACCAAGGGCATTTCCGGGTTTTACAGTGGCATCTCCGCGGTCATCGTCGGCTCCACCGCCTCCTCCGCCGTCTACTTCGGCACCTGCGAACTGGGTAAGTCGGTTCTCTCCAAATTACCCAACTACCCTCCCGTCCTCATCCCTCCCACGGCCGGAGCCATGGGAAACATAGTCTCTTCGGCTATAATGGTGCCCAAGGAGCTCATCACGCAGCGGATGCAGGCCGGGGCCAAAGGGAGGTCGTGGCAGGTGCTGCTGAAGATCCTAGAAAACGACGGCGTTCTGGGTTTGTACGCAGGGTACTCTGCGACATTGCTGAGGAACTTGCCTGCGGGTGTGTTGAGCTATTCTTCGTTCGAGTACCTGAAATCGGCGGTTCTGAGCAAGACGAAGCAGACCAATTTGGAGCCGATTCAGAGCGTGGTGTGCGGGGCGTTGGCCGGAGCAATTTCGGCCTCCATTACGACGCCGCTGGATGTGGTGAAGACGAGGCTGATGACTGGTGCTAGGCAGGGTGGAGTTTCGGGGACGGTGAAGCAGATTATAACGGAGGAAGGGTGGGTGGGGTTCACTAGAGGAGTGGGGCCTAGAGTTCTTCACAGTGCTTGCTTTTCGGCTTTGGGTTACTTTGCTTTCGAGACTGCCAGGCTTGCCATTCTGAATCAGTATATTAGGAGGAAGGAGTTGCAGCAAATGCAAGAGTCAGGTGTCGATGTTGGTGTTGCTTCCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

382

Amino Acids

40.53

Weight (kDa)

9.61

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	94 - 174	2.4e-18	Mitochondrial carrier protein
Mito_carr	PF00153	187 - 264	8.7e-13	Mitochondrial carrier protein
Mito_carr	PF00153	272 - 356	1.7e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42130
fragaria_vesca	FvH4_2g14300 FvH4_2g14300
malus_domestica	MD05G1019200.v1.1 MD10G1020700.v1.1
prunus_persica	Prupe.8G024200_v2.0.a1 Prupe.8G024200_v2.0.a1
pyrus_communis	pycom05g01120 pycom10g01330
rosa_chinensis	RchiOBHm_Chr6g0276601
rosa_laevigata	RLG00000013387
rosa_multiflora	Rmu_sc0000969.1_g000001 Rmu_sc0028629.1_g000001 Rmu_sc0042856.1_g000001 Rmu_ssc0000059.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192160
rosa_rugosa	Rorug06G0102000
rosa_samantha	Rh6AG212700 Rh6BG217700 Rh6CG220000 Rh6DG209800
rosa_wichuraiana	Rw6G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	956
AarI	CACCTGC	2 cut(s)	503, 649
Acc36I	ACCTGC	2 cut(s)	503, 649
AccB1I	GGYRCC	3 cut(s)	359, 491, 601
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	449
AclWI	GGATC	1 cut(s)	667
AcoI	YGGCCR	2 cut(s)	561, 849
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	689
AcyI	GRCGYC	2 cut(s)	360, 878
AfaI	GTAC	4 cut(s)	211, 704, 713, 773
AfiI	CCNNNNNNNGG	8 cut(s)	186, 187, 325, 415, 559, 563, 648, 781
AjnI	CCWGG	1 cut(s)	1055
AluBI	AGCT	3 cut(s)	346, 613, 756
AluI	AGCT	3 cut(s)	346, 613, 756
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	2 cut(s)	589, 1043
AlwI	GGATC	1 cut(s)	667
AlwNI	CAGNNNCTG	1 cut(s)	664
AoxI	GGCC	8 cut(s)	28, 189, 561, 633, 639, 849, 864, 995
ApeKI	GCWGC	3 cut(s)	622, 664, 1099
ApoI	RAATTY	1 cut(s)	109
AspLEI	GCGC	2 cut(s)	275, 362
AspS9I	GGNCC	4 cut(s)	28, 189, 639, 995
AsuC2I	CCSGG	2 cut(s)	427, 637
AsuHPI	GGTGA	6 cut(s)	82, 118, 124, 295, 904, 955
BaeGI	GKGCMC	2 cut(s)	265, 606
BanI	GGYRCC	3 cut(s)	359, 491, 601
BanII	GRGCYC	1 cut(s)	615
BbsI	GAAGAC	2 cut(s)	244, 902
Bbv12I	GWGCWC	1 cut(s)	615
BbvCI	CCTCAGC	1 cut(s)	728
BbvI	GCAGC	3 cut(s)	634, 651, 1111
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	3 cut(s)	464, 576, 703
BciT130I	CCWGG	1 cut(s)	1057
BcnI	CCSGG	2 cut(s)	427, 637
BcoDI	GTCTC	2 cut(s)	589, 1043
BfaI	CTAG	4 cut(s)	677, 918, 984, 999
BfmI	CTRYAG	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	363
BfuAI	ACCTGC	2 cut(s)	503, 649
BisI	GCNGC	5 cut(s)	280, 623, 665, 881, 1100
BlsI	GCNGC	5 cut(s)	281, 624, 666, 882, 1101
Bme1390I	CCNGG	3 cut(s)	427, 637, 1057
BmgT120I	GGNCC	4 cut(s)	28, 189, 639, 995
BmiI	GGNNCC	9 cut(s)	298, 361, 463, 493, 568, 603, 640, 819, 996
BmrFI	CCNGG	3 cut(s)	427, 637, 1057
BmrI	ACTGGG	2 cut(s)	201, 512
BmsI	GCATC	3 cut(s)	379, 450, 618
BmuI	ACTGGG	2 cut(s)	201, 512
BoxI	GACNNNNGTC	1 cut(s)	227
BpiI	GAAGAC	2 cut(s)	244, 902
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	728
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	427, 637
BsaHI	GRCGYC	2 cut(s)	360, 878
BsaJI	CCNNGG	6 cut(s)	414, 447, 558, 570, 606, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	953, 983
Bsc4I	CCNNNNNNNGG	8 cut(s)	186, 187, 325, 415, 559, 563, 648, 781
Bse1I	ACTGG	3 cut(s)	207, 507, 916
Bse3DI	GCAATG	1 cut(s)	722
BseBI	CCWGG	1 cut(s)	1057
BseDI	CCNNGG	6 cut(s)	414, 447, 558, 570, 606, 636
BseGI	GGATG	4 cut(s)	150, 549, 633, 892
BseLI	CCNNNNNNNGG	8 cut(s)	186, 187, 325, 415, 559, 563, 648, 781
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	4 cut(s)	30, 378, 719, 782
BseNI	ACTGG	3 cut(s)	207, 507, 916
BseRI	GAGGAG	3 cut(s)	163, 463, 1002
BseSI	GKGCMC	2 cut(s)	265, 606
BseX3I	CGGCCG	1 cut(s)	561
BseXI	GCAGC	3 cut(s)	634, 651, 1111
BsgI	GTGCAG	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	449
Bsh1285I	CGRYCG	1 cut(s)	564
BshFI	GGCC	8 cut(s)	30, 191, 563, 635, 641, 851, 866, 997
BshNI	GGYRCC	3 cut(s)	359, 491, 601
BsiEI	CGRYCG	1 cut(s)	564
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	5 cut(s)	294, 426, 564, 636, 852
BslFI	GGGAC	2 cut(s)	49, 952
BslI	CCNNNNNNNGG	8 cut(s)	186, 187, 325, 415, 559, 563, 648, 781
BsmAI	GTCTC	2 cut(s)	589, 1043
BsmFI	GGGAC	2 cut(s)	49, 952
BsnI	GGCC	8 cut(s)	30, 191, 563, 635, 641, 851, 866, 997
Bsp1286I	GDGCHC	3 cut(s)	265, 606, 615
Bsp143I	GATC	1 cut(s)	672
Bsp19I	CCATGG	1 cut(s)	570
BspANI	GGCC	8 cut(s)	30, 191, 563, 635, 641, 851, 866, 997
BspCNI	CTCAG	4 cut(s)	29, 377, 720, 783
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	9 cut(s)	298, 361, 463, 493, 568, 603, 640, 819, 996
BspMI	ACCTGC	2 cut(s)	503, 649
BspPI	GGATC	1 cut(s)	667
BspT107I	GGYRCC	3 cut(s)	359, 491, 601
BsrDI	GCAATG	1 cut(s)	722
BsrI	ACTGG	3 cut(s)	207, 507, 916
BssECI	CCNNGG	6 cut(s)	414, 447, 558, 570, 606, 636
BssMI	GATC	1 cut(s)	672
BssNI	GRCGYC	2 cut(s)	360, 878
BssT1I	CCWWGG	3 cut(s)	414, 570, 606
Bst2UI	CCWGG	1 cut(s)	1057
Bst4CI	ACNGT	4 cut(s)	250, 437, 943, 1013
Bst6I	CTCTTC	2 cut(s)	92, 592
BstACI	GRCGYC	2 cut(s)	360, 878
BstAPI	GCANNNNNTGC	3 cut(s)	628, 664, 1105
BstC8I	GCNNGC	7 cut(s)	261, 277, 379, 633, 741, 1018, 1062
BstDEI	CTNAG	5 cut(s)	16, 60, 364, 728, 791
BstDSI	CCRYGG	3 cut(s)	447, 558, 570
BstF5I	GGATG	4 cut(s)	150, 549, 633, 892
BstFNI	CGCG	1 cut(s)	449
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	275, 362
BstKTI	GATC	1 cut(s)	675
BstMAI	GTCTC	2 cut(s)	589, 1043
BstMBI	GATC	1 cut(s)	672
BstMCI	CGRYCG	1 cut(s)	564
BstNI	CCWGG	1 cut(s)	1057
BstPAI	GACNNNNGTC	1 cut(s)	227
BstSCI	CCNGG	3 cut(s)	425, 635, 1055
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	2 cut(s)	265, 606
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	3 cut(s)	634, 651, 1111
BstV2I	GAAGAC	2 cut(s)	244, 902
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
BstZI	CGGCCG	1 cut(s)	561
BsuRI	GGCC	8 cut(s)	30, 191, 563, 635, 641, 851, 866, 997
BtgI	CCRYGG	3 cut(s)	447, 558, 570
BtsCI	GGATG	4 cut(s)	150, 549, 633, 892
BtsIMutI	CAGTG	2 cut(s)	442, 1018
BveI	ACCTGC	2 cut(s)	503, 649
Cac8I	GCNNGC	7 cut(s)	261, 277, 379, 633, 741, 1018, 1062
CaiI	CAGNNNCTG	1 cut(s)	664
CfoI	GCGC	2 cut(s)	275, 362
Cfr13I	GGNCC	4 cut(s)	28, 189, 639, 995
Cfr42I	CCGCGG	1 cut(s)	450
CseI	GACGC	1 cut(s)	886
Csp6I	GTAC	4 cut(s)	210, 703, 712, 772
CviAII	CATG	1 cut(s)	571
CviQI	GTAC	4 cut(s)	210, 703, 712, 772
DdeI	CTNAG	5 cut(s)	16, 60, 364, 728, 791
DinI	GGCGCC	1 cut(s)	361
DpnI	GATC	1 cut(s)	674
DpnII	GATC	1 cut(s)	672
EaeI	YGGCCR	2 cut(s)	561, 849
EagI	CGGCCG	1 cut(s)	561
Eam1104I	CTCTTC	2 cut(s)	92, 592
EarI	CTCTTC	2 cut(s)	92, 592
EciI	GGCGGA	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	613
EclXI	CGGCCG	1 cut(s)	561
Eco130I	CCWWGG	3 cut(s)	414, 570, 606
Eco24I	GRGCYC	1 cut(s)	615
Eco52I	CGGCCG	1 cut(s)	561
Eco53kI	GAGCTC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	689
EcoICRI	GAGCTC	1 cut(s)	613
EcoO109I	RGGNCCY	1 cut(s)	995
EcoRII	CCWGG	1 cut(s)	1055
EcoT14I	CCWWGG	3 cut(s)	414, 570, 606
EcoT38I	GRGCYC	1 cut(s)	615
EgeI	GGCGCC	1 cut(s)	361
EheI	GGCGCC	1 cut(s)	361
ErhI	CCWWGG	3 cut(s)	414, 570, 606
FaeI	CATG	1 cut(s)	574
FaiI	YATR	5 cut(s)	572, 581, 596, 956, 1080
FaqI	GGGAC	2 cut(s)	49, 952
FatI	CATG	1 cut(s)	570
FauI	CCCGC	3 cut(s)	221, 736, 833
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	5 cut(s)	280, 623, 665, 881, 1100
FokI	GGATG	4 cut(s)	137, 536, 640, 899
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	5 cut(s)	280, 623, 665, 881, 1100
FspBI	CTAG	4 cut(s)	677, 918, 984, 999
GlaI	GCGC	2 cut(s)	274, 361
GluI	GCNGC	5 cut(s)	280, 623, 665, 881, 1100
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	8 cut(s)	30, 191, 563, 635, 641, 851, 866, 997
HapII	CCGG	5 cut(s)	294, 426, 564, 636, 852
HgaI	GACGC	1 cut(s)	886
HhaI	GCGC	2 cut(s)	275, 362
Hin1I	GRCGYC	2 cut(s)	360, 878
Hin1II	CATG	1 cut(s)	574
Hin6I	GCGC	2 cut(s)	273, 360
HinP1I	GCGC	2 cut(s)	273, 360
HinfI	GANTC	5 cut(s)	12, 241, 823, 1072, 1112
HpaII	CCGG	5 cut(s)	294, 426, 564, 636, 852
HphI	GGTGA	6 cut(s)	82, 118, 124, 295, 904, 955
Hpy166II	GTNNAC	2 cut(s)	484, 981
Hpy188I	TCNGA	4 cut(s)	367, 792, 828, 1071
Hpy188III	TCNNGA	6 cut(s)	238, 326, 337, 349, 409, 1048
Hpy8I	GTNNAC	2 cut(s)	484, 981
Hpy99I	CGWCG	3 cut(s)	461, 689, 880
HpyAV	CCTTC	4 cut(s)	310, 394, 959, 1084
HpyCH4III	ACNGT	4 cut(s)	250, 437, 943, 1013
HpyCH4V	TGCA	5 cut(s)	38, 392, 631, 1099, 1108
HpyF3I	CTNAG	5 cut(s)	16, 60, 364, 728, 791
Hsp92I	GRCGYC	2 cut(s)	360, 878
Hsp92II	CATG	1 cut(s)	574
HspAI	GCGC	2 cut(s)	273, 360
KasI	GGCGCC	1 cut(s)	359
KspI	CCGCGG	1 cut(s)	450
Kzo9I	GATC	1 cut(s)	672
LmnI	GCTCC	7 cut(s)	296, 351, 467, 566, 610, 817, 854
Lsp1109I	GCAGC	3 cut(s)	634, 651, 1111
LweI	GCATC	3 cut(s)	379, 450, 618
MaeI	CTAG	4 cut(s)	677, 918, 984, 999
MaeIII	GTNAC	1 cut(s)	1034
MalI	GATC	1 cut(s)	674
MboI	GATC	1 cut(s)	672
MboII	GAAGA	7 cut(s)	79, 244, 579, 682, 753, 907, 998
MfeI	CAATTG	1 cut(s)	184
MflI	RGATCY	1 cut(s)	672
MhlI	GDGCHC	3 cut(s)	265, 606, 615
MluCI	AATT	5 cut(s)	109, 184, 524, 811, 858
Mly113I	GGCGCC	1 cut(s)	360
MlyI	GAGTC	2 cut(s)	6, 1121
MspA1I	CMGCKG	3 cut(s)	449, 625, 883
MspI	CCGG	5 cut(s)	294, 426, 564, 636, 852
MspR9I	CCNGG	3 cut(s)	427, 637, 1057
MunI	CAATTG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	1057
MvnI	CGCG	1 cut(s)	449
NarI	GGCGCC	1 cut(s)	360
NciI	CCSGG	2 cut(s)	427, 637
NcoI	CCATGG	1 cut(s)	570
NdeII	GATC	1 cut(s)	672
NlaIII	CATG	1 cut(s)	574
NlaIV	GGNNCC	9 cut(s)	298, 361, 463, 493, 568, 603, 640, 819, 996
PaqCI	CACCTGC	2 cut(s)	503, 649
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PfeI	GAWTC	3 cut(s)	241, 823, 1072
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	5 cut(s)	281, 624, 666, 882, 1101
PleI	GAGTC	2 cut(s)	6, 1120
PluTI	GGCGCC	1 cut(s)	363
PpsI	GAGTC	2 cut(s)	6, 1120
PshAI	GACNNNNGTC	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	1055
PspGI	CCWGG	1 cut(s)	1055
PspN4I	GGNNCC	9 cut(s)	298, 361, 463, 493, 568, 603, 640, 819, 996
PspPI	GGNCC	4 cut(s)	28, 189, 639, 995
PstNI	CAGNNNCTG	1 cut(s)	664
PsuI	RGATCY	1 cut(s)	672
RsaI	GTAC	4 cut(s)	211, 704, 713, 773
RsaNI	GTAC	4 cut(s)	210, 703, 712, 772
SacI	GAGCTC	1 cut(s)	615
SacII	CCGCGG	1 cut(s)	450
SatI	GCNGC	5 cut(s)	280, 623, 665, 881, 1100
Sau3AI	GATC	1 cut(s)	672
Sau96I	GGNCC	4 cut(s)	28, 189, 639, 995
SchI	GAGTC	2 cut(s)	6, 1121
ScrFI	CCNGG	3 cut(s)	427, 637, 1057
SduI	GDGCHC	3 cut(s)	265, 606, 615
SfaNI	GCATC	3 cut(s)	379, 450, 618
SfcI	CTRYAG	1 cut(s)	138
SfoI	GGCGCC	1 cut(s)	361
Sfr303I	CCGCGG	1 cut(s)	450
SgrBI	CCGCGG	1 cut(s)	450
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	5 cut(s)	109, 184, 524, 811, 858
SspDI	GGCGCC	1 cut(s)	359
SspMI	CTAG	4 cut(s)	677, 918, 984, 999
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	3 cut(s)	425, 635, 1055
StyI	CCWWGG	3 cut(s)	414, 570, 606
TaaI	ACNGT	4 cut(s)	250, 437, 943, 1013
TaqI	TCGA	5 cut(s)	255, 387, 768, 1047, 1122
TasI	AATT	5 cut(s)	109, 184, 524, 811, 858
TauI	GCSGC	2 cut(s)	282, 883
TfiI	GAWTC	3 cut(s)	241, 823, 1072
TscAI	CASTG	2 cut(s)	442, 1018
TseI	GCWGC	3 cut(s)	622, 664, 1099
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	974
TspRI	CASTG	2 cut(s)	442, 1018
Van91I	CCANNNNNTGG	1 cut(s)	325
XapI	RAATTY	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	4 cut(s)	677, 918, 984, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.